PI0011917 (gene) Melon (PI 482460) v1

Overview
NamePI0011917
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr04: 17437634 .. 17438086 (+)
RNA-Seq ExpressionPI0011917
SyntenyPI0011917
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCGAACCTTTCGGCGTAATCGGCGAAGAGCTAGGCAGAGACAAGTAAGAAGAATGGAAAACAATAACAGAAATGCCCCTCCGCCGCATGCTGCCCCAGAACCAAATGCTGCCTACATGGCACATGACTTGGATAGACCGATTATAGCTTATGCAGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGTGAAAACGTTAGGTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAACGTCGGACAATTTGGTGGTCACCCTGGGGAGGATCCACACGAGCATATTAGGAGTTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAAGAGGTGGGCCAACGCCTTAGAAGATGGTGAGGTGGGAACATGA

mRNA sequence

ATGGAGCGAACCTTTCGGCGTAATCGGCGAAGAGCTAGGCAGAGACAAGTAAGAAGAATGGAAAACAATAACAGAAATGCCCCTCCGCCGCATGCTGCCCCAGAACCAAATGCTGCCTACATGGCACATGACTTGGATAGACCGATTATAGCTTATGCAGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGTGAAAACGTTAGGTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAACGTCGGACAATTTGGTGGTCACCCTGGGGAGGATCCACACGAGCATATTAGGAGTTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAAGAGGTGGGCCAACGCCTTAGAAGATGGTGAGGTGGGAACATGA

Coding sequence (CDS)

ATGGAGCGAACCTTTCGGCGTAATCGGCGAAGAGCTAGGCAGAGACAAGTAAGAAGAATGGAAAACAATAACAGAAATGCCCCTCCGCCGCATGCTGCCCCAGAACCAAATGCTGCCTACATGGCACATGACTTGGATAGACCGATTATAGCTTATGCAGCACCCAACCTCTACAACTTCAACCCAGGGATCGCTTACCCTGTGTTCGGTGAAAACGTTAGGTTTGAAATCAAACCTGTCATGCTTCAGATGATTCAGAACGTCGGACAATTTGGTGGTCACCCTGGGGAGGATCCACACGAGCATATTAGGAGTTTTTACTCCATCTGCGCTTCCTTCCATATGCCAGGCATCTCACCTGAAGAATTAAGATTCGCTCTCTTCCCGTTAACTCTGAGGGATGAGGCGAAGAGGTGGGCCAACGCCTTAGAAGATGGTGAGGTGGGAACATGA

Protein sequence

MERTFRRNRRRARQRQVRRMENNNRNAPPPHAAPEPNAAYMAHDLDRPIIAYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNVGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEVGT
Homology
BLAST of PI0011917 vs. ExPASy TrEMBL
Match: A0A5A7V2U7 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001950 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 8.1e-34
Identity = 73/108 (67.59%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 23  NNRNAPPPHAAPEPNAAYMAHDLDRPIIAYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 82
           NN+  P   AA   N  Y+A D DRPI +YA+PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 83  QMIQNVGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPL 131
           Q+IQN GQF  HP +DPH++IR+FYSICASFHMPGIS EELRF  F L
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0011917 vs. ExPASy TrEMBL
Match: A0A5A7UDN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00900 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.7e-29
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 0

Query: 23  NNRNAPPPHAAPEPNAAYMAHDLDRPIIAYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 82
           NN+N P      E N AY+AHDLD+PI +YA+PNLY+FNPGIAY  FGENV FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 83  QMIQNVGQFGGHPGEDPHEHIRSFYSICASFHMPGIS 120
            M QN GQFGGHP EDP++HIR+FY ICASF+M  IS
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

BLAST of PI0011917 vs. ExPASy TrEMBL
Match: A0A5D3BVN1 (Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00390 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 0

Query: 20  MENNNRNAPPPHAAP--EPNAAYMAHDLDRPIIAYAAPNLYNFNPGIAYPVFGENVRFEI 79
           M +N  N  P ++A   + N   +AH+LD PI AY + NLY+FN GIAY VFGEN  FE+
Sbjct: 1   MASNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEV 60

Query: 80  KPVMLQMIQNVGQFGGHPGEDPHEHIRSFYSICASFHMPGIS 120
           KPVMLQMIQ  GQF G+ GEDPHEHI+SFYSICASFHM   S
Sbjct: 61  KPVMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSNFS 102

BLAST of PI0011917 vs. ExPASy TrEMBL
Match: A0A5A7TNS8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G00350 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.8e-25
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 0

Query: 37  NAAYMAHDLDRPIIAYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNVGQFGGHPG 96
           N   +AH+L+ PI  YA+P+LY FN GI YP FG N RF++KP ML MIQ   QFGG+  
Sbjct: 39  NPILIAHNLNNPINEYASPDLYVFNLGITYPAFG-NARFKMKPTMLHMIQTTVQFGGYLD 98

Query: 97  EDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALE 145
           EDP +HI+S Y +C+SFH+P +S E+L    F  TL+D+ K+W   LE
Sbjct: 99  EDPQDHIKSIYVMCSSFHLPCLSQEDLHITYFTFTLKDDIKKWVGTLE 145

BLAST of PI0011917 vs. ExPASy TrEMBL
Match: U5CUK7 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.7e-21
Identity = 57/114 (50.00%), Postives = 66/114 (57.89%), Query Frame = 0

Query: 35  EPNAAYMAHDLDRPIIAYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNVGQFGGH 94
           E N   +A D  R I  YAAP     N GI  P   +   FE+KPVM QM+Q VGQFGG 
Sbjct: 11  EANPIALADDRARAIREYAAPMFNELNSGIVRPEI-QAPHFELKPVMFQMLQTVGQFGGS 70

Query: 95  PGEDPHEHIRSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEV 149
           P EDPH HIRSF  +  SF + G+S E LR  LFP +LRD A+ W N L    V
Sbjct: 71  PTEDPHLHIRSFLEVSDSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSV 123

BLAST of PI0011917 vs. NCBI nr
Match: KAA0062403.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK26578.1 putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 153.3 bits (386), Expect = 1.7e-33
Identity = 73/108 (67.59%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 23  NNRNAPPPHAAPEPNAAYMAHDLDRPIIAYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 82
           NN+  P   AA   N  Y+A D DRPI +YA+PNLY+FNPGIAYP F EN RFEIK VML
Sbjct: 5   NNQGIPANQAAQGANPTYLADDRDRPIRSYASPNLYDFNPGIAYPTFSENTRFEIKLVML 64

Query: 83  QMIQNVGQFGGHPGEDPHEHIRSFYSICASFHMPGISPEELRFALFPL 131
           Q+IQN GQF  HP +DPH++IR+FYSICASFHMPGIS EELRF  F L
Sbjct: 65  QIIQNAGQFRRHPRKDPHDYIRNFYSICASFHMPGISVEELRFTPFRL 112

BLAST of PI0011917 vs. NCBI nr
Match: WP_217833177.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-31
Identity = 77/167 (46.11%), Postives = 102/167 (61.08%), Query Frame = 0

Query: 1   MERTFRRNRRRARQRQVRRMENNNRNA-----------------PPPHAAPEPNAAYMAH 60
           +ERTFRR  R+ +QR+  +    N +A                    HA  + N   +AH
Sbjct: 16  IERTFRRRIRQIKQRRSNQTIEENMDAQYNQPQAPQAGVRQNANAQEHANYDTNPIVLAH 75

Query: 61  DLDRPIIAYAAPNLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNVGQFGGHPGEDPHEHI 120
           D +RP+  YA+PNLYNF PGI  P F  N RFE+KPVMLQM+Q  GQFGG  GEDPH H+
Sbjct: 76  DRNRPMREYASPNLYNFAPGILQPTFEGNGRFEMKPVMLQMLQAAGQFGGATGEDPHAHL 135

Query: 121 RSFYSICASFHMPGISPEELRFALFPLTLRDEAKRWANALEDGEVGT 151
           +SF  IC++F M G+  + +R  LFP +LRDEA++WA + E GE+ T
Sbjct: 136 KSFLEICSAFPMAGVPQDSIRLTLFPFSLRDEARQWAYSFEPGEITT 182

BLAST of PI0011917 vs. NCBI nr
Match: KAA0051815.1 (hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK21429.1 hypothetical protein E5676_scaffold609G00900 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 5.5e-29
Identity = 65/97 (67.01%), Postives = 76/97 (78.35%), Query Frame = 0

Query: 23  NNRNAPPPHAAPEPNAAYMAHDLDRPIIAYAAPNLYNFNPGIAYPVFGENVRFEIKPVML 82
           NN+N P      E N AY+AHDLD+PI +YA+PNLY+FNPGIAY  FGENV FEIK +ML
Sbjct: 2   NNQNNPAYQNTQEQNPAYLAHDLDKPIKSYASPNLYDFNPGIAYLAFGENVGFEIKHLML 61

Query: 83  QMIQNVGQFGGHPGEDPHEHIRSFYSICASFHMPGIS 120
            M QN GQFGGHP EDP++HIR+FY ICASF+M  IS
Sbjct: 62  YMTQNAGQFGGHPHEDPYDHIRNFYFICASFNMLRIS 98

BLAST of PI0011917 vs. NCBI nr
Match: XP_038887458.1 (uncharacterized protein LOC120077591 [Benincasa hispida])

HSP 1 Score: 136.0 bits (341), Expect = 2.7e-28
Identity = 72/153 (47.06%), Postives = 103/153 (67.32%), Query Frame = 0

Query: 1   MERTF--RRNRRRARQRQVRRMENNNRNAPPPHAA---PEPNAAYMAHDLDRPIIAYAAP 60
           ++ TF  R ++ RA +R++   +NNN  AP  +     P  +  ++A D + PI  YAAP
Sbjct: 15  IDHTFRTRAHQNRAWRRRINMADNNNNEAPEGNQGVNRPVQDPVFLAADHNIPIRNYAAP 74

Query: 61  NLYNFNPGIAYPVFGENVRFEIKPVMLQMIQNVGQFGGHPGEDPHEHIRSFYSICASFHM 120
           NLY+F+PGI+ P+  EN RFEIKPVM+QMIQN+ QF     E+PH H+  F  +C++F +
Sbjct: 75  NLYDFSPGISRPIVEENARFEIKPVMVQMIQNMRQFESLQCENPHAHLTIFVEMCSTFSI 134

Query: 121 PGISPEELRFALFPLTLRDEAKRWANALEDGEV 149
           PGI+P  +R  LFP TLRD+AKRWA++LE  E+
Sbjct: 135 PGITPVGIRLYLFPYTLRDKAKRWAHSLEANEI 167

BLAST of PI0011917 vs. NCBI nr
Match: TYK02149.1 (putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 7.5e-26
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 0

Query: 20  MENNNRNAPPPHAAP--EPNAAYMAHDLDRPIIAYAAPNLYNFNPGIAYPVFGENVRFEI 79
           M +N  N  P ++A   + N   +AH+LD PI AY + NLY+FN GIAY VFGEN  FE+
Sbjct: 1   MASNKNNVVPLNSATQGQGNLTLIAHNLDLPIRAYTSLNLYDFNLGIAYLVFGENAHFEV 60

Query: 80  KPVMLQMIQNVGQFGGHPGEDPHEHIRSFYSICASFHMPGIS 120
           KPVMLQMIQ  GQF G+ GEDPHEHI+SFYSICASFHM   S
Sbjct: 61  KPVMLQMIQKAGQFDGYQGEDPHEHIKSFYSICASFHMSNFS 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V2U78.1e-3467.59Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7UDN82.7e-2967.01Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BVN13.6e-2661.76Putative disease resistance RPP13-like protein 1 OS=Cucumis melo var. makuwa OX=... [more]
A0A5A7TNS81.8e-2551.85Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
U5CUK72.7e-2150.00Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00007640... [more]
Match NameE-valueIdentityDescription
KAA0062403.11.7e-3367.59putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa] >TYK... [more]
WP_217833177.12.7e-3146.11retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
KAA0051815.15.5e-2967.01hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa] >TYK2142... [more]
XP_038887458.12.7e-2847.06uncharacterized protein LOC120077591 [Benincasa hispida][more]
TYK02149.17.5e-2661.76putative disease resistance RPP13-like protein 1 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0011917.1PI0011917.1mRNA