PI0011866 (gene) Melon (PI 482460) v1

Overview
NamePI0011866
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRNase H domain-containing protein
Locationchr10: 14272652 .. 14272903 (-)
RNA-Seq ExpressionPI0011866
SyntenyPI0011866
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCTTAGTACTCATCTGACAATGGTTGTTGGAAGCTCAATTCTGATGCTTCGTGGAATGATCGTGAAAGTTGGTGGACTCGACTGGGTGGTTCGTGACTCTTCGAGATCTCTCCTTCTTGTCGGTTGTGAGAGGGTATTTTCCAATTGGCCTATCAAGATTTTGGAAGCTCTTGCTATGGTTAGAGGTTTGCATGTCCTTGTTGATTATCTTGGGGGGACCCCCCTCATCCAACTATATCGAGTCTGA

mRNA sequence

ATGTGTCTTAGTACTCATCTGACAATGGTTGTTGGAAGCTCAATTCTGATGCTTCGTGGAATGATCGTGAAAGTTGGTGGACTCGACTGGGTGGTTCGTGACTCTTCGAGATCTCTCCTTCTTGTCGGTTGTGAGAGGGTATTTTCCAATTGGCCTATCAAGATTTTGGAAGCTCTTGCTATGGTTAGAGGTTTGCATGTCCTTGTTGATTATCTTGGGGGGACCCCCCTCATCCAACTATATCGAGTCTGA

Coding sequence (CDS)

ATGTGTCTTAGTACTCATCTGACAATGGTTGTTGGAAGCTCAATTCTGATGCTTCGTGGAATGATCGTGAAAGTTGGTGGACTCGACTGGGTGGTTCGTGACTCTTCGAGATCTCTCCTTCTTGTCGGTTGTGAGAGGGTATTTTCCAATTGGCCTATCAAGATTTTGGAAGCTCTTGCTATGGTTAGAGGTTTGCATGTCCTTGTTGATTATCTTGGGGGGACCCCCCTCATCCAACTATATCGAGTCTGA

Protein sequence

MCLSTHLTMVVGSSILMLRGMIVKVGGLDWVVRDSSRSLLLVGCERVFSNWPIKILEALAMVRGLHVLVDYLGGTPLIQLYRV
Homology
[Close]
BLAST of PI0011866 vs. ExPASy TrEMBL
Match: A0A5D3E6P6 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005870 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.5e-05
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 22 IVKVGGLDWVVRDSSRSLLLVGCERVFSNWPIKILEALAMVRGLHVLVDYLG 74
          + ++ G  WVVRDS+ + +L  CER    WP+++LEALA  RGL V  DY G
Sbjct: 31 VEEISGTSWVVRDSAGAFILASCERAEVKWPMEVLEALATNRGLIVYSDYFG 82

[Close]
BLAST of PI0011866 vs. NCBI nr
Match: KAA0038679.1 (hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK31290.1 hypothetical protein E5676_scaffold455G005870 [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 5.3e-05
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0 

Query: 22 IVKVGGLDWVVRDSSRSLLLVGCERVFSNWPIKILEALAMVRGLHVLVDYLG 74
          + ++ G  WVVRDS+ + +L  CER    WP+++LEALA  RGL V  DY G
Sbjct: 31 VEEISGTSWVVRDSAGAFILASCERAEVKWPMEVLEALATNRGLIVYSDYFG 82

The following BLAST results are available for this feature:
BLAST of PI0011866 vs.
Match NameE-valueIdentityDescription
BLAST of PI0011866 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3E6P62.5e-0548.08RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of PI0011866 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0038679.15.3e-0548.08hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK3129... [more]
BLAST of PI0011866 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0011866.1PI0011866.1mRNA