PI0011831 (gene) Melon (PI 482460) v1

Overview


Name	PI0011831
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr05: 9473178 .. 9473882 (+)
RNA-Seq Expression	PI0011831
Synteny	PI0011831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTGGTAGAAAAATTATACGCCGCTAAGCTCAATGCTGAGGAGTTTAGCGTGGAAATCAGTGGAAGGGCGGTGAGCTTCAACGCGGAGGCCATCAACACTTTATATGACTTGCCCAATGATGTTGAAACGCTTGGGCATGAATACGTGGTCAGCCCAACCAAGAAAATGGCCCGTGAAGCATTAGAAGTCATTGCCTGGCTTGGGGCCACATGGAAAGTTACGCCGACGGGGAAATATCAACTTTATCACACACCAATTGACCATATAAGCAAGTGTGTGTCTTTTCTTCATAAAAAAGAAGATATCTCCCACGCGCCATGACAACACCATCAACTTAGAGTCAGCGATGCTGCTCTATTCATGATGAAGAAGAAGCGCGTAAACCTCGGTGATCTAATAGCTACATCCATCTTGTCCTGGATACGAGCTCCCAAGGGCACCATGCCTTTCCCATCAACTGTCGAAGCCCTTTGCGTGAAGGTTGTGCCTTTCCTAAGTGCTTTCAACCCAATGCCCATCCCAGGTGGCCTGTGCAACCAAGTATCTTTGAATCGACGATCACTTTCCATGCCCACAAAGAGATGGAAAGGCGGTCAAAGACATTGGGTGATACAGAGGACGAAGGCGCGACCCAGGCAGATCGCAAAACGAAAGCCCCTACCACTGCATCAACTCCTCAACCAAAAGTCAAAAAATTAA

mRNA sequence

ATGAGTGTGGTAGAAAAATTATACGCCGCTAAGCTCAATGCTGAGGAGTTTAGCGTGGAAATCAGTGGAAGGGCGGTGAGCTTCAACGCGGAGGCCATCAACACTTTATATGACTTGCCCAATGATGTTGAAACGCTTGGGCATGAATACGTGGTCAGCCCAACCAAGAAAATGGCCCGTGAAAGATGGAAAGGCGGTCAAAGACATTGGGTGATACAGAGGACGAAGGCGCGACCCAGGCAGATCGCAAAACGAAAGCCCCTACCACTGCATCAACTCCTCAACCAAAAGTCAAAAAATTAA

Coding sequence (CDS)

ATGAGTGTGGTAGAAAAATTATACGCCGCTAAGCTCAATGCTGAGGAGTTTAGCGTGGAAATCAGTGGAAGGGCGGTGAGCTTCAACGCGGAGGCCATCAACACTTTATATGACTTGCCCAATGATGTTGAAACGCTTGGGCATGAATACGTGGTCAGCCCAACCAAGAAAATGGCCCGTGAAAGATGGAAAGGCGGTCAAAGACATTGGGTGATACAGAGGACGAAGGCGCGACCCAGGCAGATCGCAAAACGAAAGCCCCTACCACTGCATCAACTCCTCAACCAAAAGTCAAAAAATTAA

Protein sequence

MSVVEKLYAAKLNAEEFSVEISGRAVSFNAEAINTLYDLPNDVETLGHEYVVSPTKKMARERWKGGQRHWVIQRTKARPRQIAKRKPLPLHQLLNQKSKN

Homology

[Close]

BLAST of PI0011831 vs. ExPASy TrEMBL
Match: A0A5A7U8H4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00470 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 6.8e-05
Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 1   MSVVEKLYAAKLNAEEFSVEISGRAVSFNAEAINTLYDLPNDVETLGHEYVVSPTKKMAR 60
           + VV+K Y AK +  +    I    + F+AEAIN LYDLPND+E  GH  +  PT+ + +
Sbjct: 42  LDVVKKFYDAKYHPTDLYATIESEKIYFHAEAINKLYDLPNDIEYPGHGIITKPTRGITK 101

Query: 61  E 62
           E
Sbjct: 102 E 102

[Close]

BLAST of PI0011831 vs. ExPASy TrEMBL
Match: A0A5A7URT6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00140 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.9e-05
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 1   MSVVEKLYAAKLNAEEFSVEISGRAVSFNAEAINTLYDLPNDVETLGHEYVVSPTKKMAR 60
           + VV K Y + LN  E+ V + G+++ FN EAIN LYDLP D ET     + +  K+ AR
Sbjct: 64  LKVVRKFYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAETPEQALITTTLKRQAR 123

Query: 61  ERWK 65
           E  K
Sbjct: 124 EALK 127

[Close]

BLAST of PI0011831 vs. ExPASy TrEMBL
Match: A0A5A7T079 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002700 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 28/56 (50.00%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 1  MSVVEKLYAAKLNAEEFSVEISGRAVSFNAEAINTLYDLPNDVETLGHEYVVSPTK 57
          M VV K Y A  +  EF V I G+ V F+ EAIN LYDLPND E      +  PTK
Sbjct: 1  MEVVSKFYDASYHPSEFYVTIEGKKVFFDTEAINELYDLPNDAEYPRQAMITKPTK 56

[Close]

BLAST of PI0011831 vs. ExPASy TrEMBL
Match: A0A5A7U4E3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46449G00020 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-04
Identity = 26/64 (40.62%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 1   MSVVEKLYAAKLNAEEFSVEISGRAVSFNAEAINTLYDLPNDVETLGHEYVVSPTKKMAR 60
           + V+ K Y + LN  E+ V + G+++ FN EAIN LYDLP D +T     + +  K+ AR
Sbjct: 107 LKVIRKFYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAKTPEQALITTTLKRQAR 166

Query: 61  ERWK 65
           E  K
Sbjct: 167 EALK 170

[Close]

BLAST of PI0011831 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-04
Identity = 28/64 (43.75%), Postives = 33/64 (51.56%), Query Frame = 0


Query: 1  MSVVEKLYAAKLNAEEFSVEISGRAVSFNAEAINTLYDLPNDVETLGHEYVVSPTKKMAR 60
          M VV K Y  K N  +  + I      FN E IN LY+ PND E LG E V   TK +A+
Sbjct: 5  MDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAK 64

Query: 61 ERWK 65
          E  K
Sbjct: 65 EALK 68

[Close]

BLAST of PI0011831 vs. NCBI nr
Match: KAA0049901.1 (hypothetical protein E6C27_scaffold13G00540 [Cucumis melo var. makuwa] >TYK07644.1 hypothetical protein E5676_scaffold105G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.4e-04
Identity = 26/61 (42.62%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 1   MSVVEKLYAAKLNAEEFSVEISGRAVSFNAEAINTLYDLPNDVETLGHEYVVSPTKKMAR 60
           + VV+K Y AK +  +    I    + F+AEAIN LYDLPND+E  GH  +  PT+ + +
Sbjct: 42  LDVVKKFYDAKYHPTDLYATIESEKIYFHAEAINKLYDLPNDIEYPGHGIITKPTRGITK 101

Query: 61  E 62
           E
Sbjct: 102 E 102

[Close]

BLAST of PI0011831 vs. NCBI nr
Match: KAA0057357.1 (hypothetical protein E6C27_scaffold280G002180 [Cucumis melo var. makuwa] >TYK30046.1 hypothetical protein E5676_scaffold216G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-04
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 1   MSVVEKLYAAKLNAEEFSVEISGRAVSFNAEAINTLYDLPNDVETLGHEYVVSPTKKMAR 60
           + VV K Y + LN  E+ V + G+++ FN EAIN LYDLP D ET     + +  K+ AR
Sbjct: 64  LKVVRKFYTSDLNQAEYYVIMDGKSIYFNVEAINKLYDLPFDAETPEQALITTTLKRQAR 123

Query: 61  ERWK 65
           E  K
Sbjct: 124 EALK 127

[Close]

BLAST of PI0011831 vs. NCBI nr
Match: KAA0035596.1 (hypothetical protein E6C27_scaffold285G002700 [Cucumis melo var. makuwa])

HSP 1 Score: 55.1 bits (131), Expect = 4.1e-04
Identity = 28/56 (50.00%), Postives = 32/56 (57.14%), Query Frame = 0


Query: 1  MSVVEKLYAAKLNAEEFSVEISGRAVSFNAEAINTLYDLPNDVETLGHEYVVSPTK 57
          M VV K Y A  +  EF V I G+ V F+ EAIN LYDLPND E      +  PTK
Sbjct: 1  MEVVSKFYDASYHPSEFYVTIEGKKVFFDTEAINELYDLPNDAEYPRQAMITKPTK 56

[Close]

BLAST of PI0011831 vs. NCBI nr
Match: TYK05842.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-04
Identity = 28/64 (43.75%), Postives = 33/64 (51.56%), Query Frame = 0


Query: 1  MSVVEKLYAAKLNAEEFSVEISGRAVSFNAEAINTLYDLPNDVETLGHEYVVSPTKKMAR 60
          M VV K Y  K N  +  + I      FN E IN LY+ PND E LG E V   TK +A+
Sbjct: 5  MDVVHKFYDVKFNPSDLFITIKDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAK 64

Query: 61 ERWK 65
          E  K
Sbjct: 65 EALK 68

[Close]

BLAST of PI0011831 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-04
Identity = 28/64 (43.75%), Postives = 33/64 (51.56%), Query Frame = 0


Query: 1  MSVVEKLYAAKLNAEEFSVEISGRAVSFNAEAINTLYDLPNDVETLGHEYVVSPTKKMAR 60
          M VV K Y  K N  +  + I      FN E IN LY+ PND E LG E V   TK +A+
Sbjct: 5  MDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAK 64

Query: 61 ERWK 65
          E  K
Sbjct: 65 EALK 68

The following BLAST results are available for this feature:

BLAST of PI0011831 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8H4	6.8e-05	42.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7URT6	8.9e-05	43.75	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T079	2.0e-04	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7U4E3	3.4e-04	40.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V6M5	3.4e-04	43.75	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]

BLAST of PI0011831 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049901.1	1.4e-04	42.62	hypothetical protein E6C27_scaffold13G00540 [Cucumis melo var. makuwa] >TYK07644...	[more]
KAA0057357.1	1.8e-04	43.75	hypothetical protein E6C27_scaffold280G002180 [Cucumis melo var. makuwa] >TYK300...	[more]
KAA0035596.1	4.1e-04	50.00	hypothetical protein E6C27_scaffold285G002700 [Cucumis melo var. makuwa]	[more]
TYK05842.1	7.0e-04	43.75	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0062900.1	7.0e-04	43.75	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0011831 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011831.1	PI0011831.1	mRNA