PI0011536 (gene) Melon (PI 482460) v1

Overview


Name	PI0011536
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr06: 8821130 .. 8821355 (-)
RNA-Seq Expression	PI0011536
Synteny	PI0011536

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTAATTCAAACTCAAATTCATCAAGAGGTCGTGGGAGACAAAATTATTCGAGGTCAAATGGAGAGATGAAATAATGACAAGATGTATGACAAAAGATAGGTTGAATGTTATAATTGTCATAAATTCTACTATTATTCATGGGAATGCAGAAATAAAGTTGAAGAAAATGCAAATTACACTGAGAAAGATGAAGAAATCAGTGATTCATCATTGCTTCTAG

mRNA sequence

ATGAGCGTAATTCAAACTCAAATTCATCAAGAGGTCGTGGGAGACAAAATTATTCGAGATAGGTTGAATGTTATAATTGTCATAAATTCTACTATTATTCATGGGAATGCAGAAATAAAGTTGAAGAAAATGCAAATTACACTGAGAAAGATGAAGAAATCAGTGATTCATCATTGCTTCTAG

Coding sequence (CDS)

ATGAGCGTAATTCAAACTCAAATTCATCAAGAGGTCGTGGGAGACAAAATTATTCGAGATAGGTTGAATGTTATAATTGTCATAAATTCTACTATTATTCATGGGAATGCAGAAATAAAGTTGAAGAAAATGCAAATTACACTGAGAAAGATGAAGAAATCAGTGATTCATCATTGCTTCTAG

Protein sequence

MSVIQTQIHQEVVGDKIIRDRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF

Homology

[Close]

BLAST of PI0011536 vs. ExPASy TrEMBL
Match: A0A5A7TIB1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold158G00210 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-12
Identity = 48/75 (64.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1   MSVIQTQIHQEVVGDKIIR---------------DRLNVIIVINSTIIHGNAEIKLKKMQ 60
           + VIQTQIHQEV  D IIR               DRLNVIIVINS I+ GNAEI+LKKMQ
Sbjct: 228 IKVIQTQIHQEVEEDNIIRGQLGKDQIMTGGMTKDRLNVIIVINSAIVLGNAEIELKKMQ 287

[Close]

BLAST of PI0011536 vs. ExPASy TrEMBL
Match: A0A5A7UV40 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G00400 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 9.1e-05
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 2   SVIQTQIHQ-EVVGDKIIRDRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF 61
           ++I+ Q+ + +++   + +D LNVIIVIN  II GNAEI+ KKMQ  L+ MKK+VI HCF
Sbjct: 93  NIIRGQVEKDQIMIGGMTKDSLNVIIVINLAIILGNAEIESKKMQNMLKMMKKAVIPHCF 152

[Close]

BLAST of PI0011536 vs. NCBI nr
Match: KAA0043083.1 (uncharacterized protein E6C27_scaffold158G00210 [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 3.2e-12
Identity = 48/75 (64.00%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1   MSVIQTQIHQEVVGDKIIR---------------DRLNVIIVINSTIIHGNAEIKLKKMQ 60
           + VIQTQIHQEV  D IIR               DRLNVIIVINS I+ GNAEI+LKKMQ
Sbjct: 228 IKVIQTQIHQEVEEDNIIRGQLGKDQIMTGGMTKDRLNVIIVINSAIVLGNAEIELKKMQ 287

[Close]

BLAST of PI0011536 vs. NCBI nr
Match: XP_031737535.1 (uncharacterized protein LOC105435097 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 2.2e-05
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 19  RDRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKK 54
           +DRLNVIIVIN  IIHGNAEI+LKKMQI LRKMKK
Sbjct: 310 KDRLNVIIVINLAIIHGNAEIELKKMQIMLRKMKK 344

[Close]

BLAST of PI0011536 vs. NCBI nr
Match: KAA0058597.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK10398.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 1.9e-04
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 0


Query: 2   SVIQTQIHQ-EVVGDKIIRDRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF 61
           ++I+ Q+ + +++   + +D LNVIIVIN  II GNAEI+ KKMQ  L+ MKK+VI HCF
Sbjct: 93  NIIRGQVEKDQIMIGGMTKDSLNVIIVINLAIILGNAEIESKKMQNMLKMMKKAVIPHCF 152

The following BLAST results are available for this feature:

BLAST of PI0011536 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011536 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIB1	1.6e-12	64.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UV40	9.1e-05	51.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0011536 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043083.1	3.2e-12	64.00	uncharacterized protein E6C27_scaffold158G00210 [Cucumis melo var. makuwa]	[more]
XP_031737535.1	2.2e-05	85.71	uncharacterized protein LOC105435097 [Cucumis sativus]	[more]
KAA0058597.1	1.9e-04	51.67	retrotransposon protein [Cucumis melo var. makuwa] >TYK10398.1 retrotransposon p...	[more]

BLAST of PI0011536 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011536.1	PI0011536.1	mRNA