PI0011526 (gene) Melon (PI 482460) v1

Overview


Name	PI0011526
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Beta-galactosidase
Location	chr10: 1088178 .. 1088441 (+)
RNA-Seq Expression	PI0011526
Synteny	PI0011526

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCCTCCACAGGTAATTTTTCAGGAGAAAAATTGAATGGCCAGAATTTTTTCTCTTGGTCCCAGTCGATCAAGATGTTTCTTGAGGGACGCCAACAATTTGGGTTTCTGACTGGTGAGATTCCTCGTCCTCCGCCTGGCAATGATCAAGAACGCCTTTGGAGAGCAGAAGACTCCTTTATTCGGTCCATGCTAATCAATAGTATGGAATCTCAAATAGGCAAGCCGCTCCTATATGTTGCTACAGCAAAGGATCTCTAG

mRNA sequence

ATGGTTCCCTCCACAGGTAATTTTTCAGGAGAAAAATTGAATGGCCAGAATTTTTTCTCTTGGTCCCAGTCGATCAAGATGTTTCTTGAGGGACGCCAACAATTTGGGTTTCTGACTGGTGAGATTCCTCGTCCTCCGCCTGGCAATGATCAAGAACGCCTTTGGAGAGCAGAAGACTCCTTTATTCGGTCCATGCTAATCAATAGTATGGAATCTCAAATAGGCAAGCCGCTCCTATATGTTGCTACAGCAAAGGATCTCTAG

Coding sequence (CDS)

ATGGTTCCCTCCACAGGTAATTTTTCAGGAGAAAAATTGAATGGCCAGAATTTTTTCTCTTGGTCCCAGTCGATCAAGATGTTTCTTGAGGGACGCCAACAATTTGGGTTTCTGACTGGTGAGATTCCTCGTCCTCCGCCTGGCAATGATCAAGAACGCCTTTGGAGAGCAGAAGACTCCTTTATTCGGTCCATGCTAATCAATAGTATGGAATCTCAAATAGGCAAGCCGCTCCTATATGTTGCTACAGCAAAGGATCTCTAG

Protein sequence

MVPSTGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRSMLINSMESQIGKPLLYVATAKDL

Homology

[Close]

BLAST of PI0011526 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIR 63
           STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IR
Sbjct: 163 STGNFSGEKLNGQNYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIR 222

Query: 64  SMLINSMESQIGKPLLYVATAKDL 88
           SMLINSME QIGKPLLY  TAKDL
Sbjct: 223 SMLINSMEPQIGKPLLYATTAKDL 246

[Close]

BLAST of PI0011526 vs. ExPASy TrEMBL
Match: A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIR 63
           STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IR
Sbjct: 163 STGNFSGEKLNGQNYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIR 222

Query: 64  SMLINSMESQIGKPLLYVATAKDL 88
           SMLINSME QIGKPLLY  TAKDL
Sbjct: 223 SMLINSMEPQIGKPLLYATTAKDL 246

[Close]

BLAST of PI0011526 vs. ExPASy TrEMBL
Match: A0A5A7SM64 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G00220 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIR 63
           STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IR
Sbjct: 163 STGNFSGEKLNGQNYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIR 222

Query: 64  SMLINSMESQIGKPLLYVATAKDL 88
           SMLINSME QIGKPLLY  TAKDL
Sbjct: 223 SMLINSMEPQIGKPLLYATTAKDL 246

[Close]

BLAST of PI0011526 vs. ExPASy TrEMBL
Match: A0A5A7V0Y9 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00520 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIR 63
           STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IR
Sbjct: 438 STGNFSGEKLNGQNYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIR 497

Query: 64  SMLINSMESQIGKPLLYVATAKDL 88
           SMLINSME QIGKPLLY  TAKDL
Sbjct: 498 SMLINSMEPQIGKPLLYATTAKDL 521

[Close]

BLAST of PI0011526 vs. ExPASy TrEMBL
Match: A0A5A7UGB2 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055G00290 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.0e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIR 63
           STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IR
Sbjct: 192 STGNFSGEKLNGQNYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIR 251

Query: 64  SMLINSMESQIGKPLLYVATAKDL 88
           SMLINSME QIGKPLLY  TAKDL
Sbjct: 252 SMLINSMEPQIGKPLLYATTAKDL 275

[Close]

BLAST of PI0011526 vs. NCBI nr
Match: TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 8.2e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIR 63
           STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IR
Sbjct: 163 STGNFSGEKLNGQNYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIR 222

Query: 64  SMLINSMESQIGKPLLYVATAKDL 88
           SMLINSME QIGKPLLY  TAKDL
Sbjct: 223 SMLINSMEPQIGKPLLYATTAKDL 246

[Close]

BLAST of PI0011526 vs. NCBI nr
Match: TYK08054.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 8.2e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIR 63
           STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IR
Sbjct: 163 STGNFSGEKLNGQNYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIR 222

Query: 64  SMLINSMESQIGKPLLYVATAKDL 88
           SMLINSME QIGKPLLY  TAKDL
Sbjct: 223 SMLINSMEPQIGKPLLYATTAKDL 246

[Close]

BLAST of PI0011526 vs. NCBI nr
Match: KAA0034386.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 8.2e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIR 63
           STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IR
Sbjct: 220 STGNFSGEKLNGQNYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIR 279

Query: 64  SMLINSMESQIGKPLLYVATAKDL 88
           SMLINSME QIGKPLLY  TAKDL
Sbjct: 280 SMLINSMEPQIGKPLLYATTAKDL 303

[Close]

BLAST of PI0011526 vs. NCBI nr
Match: TYJ97256.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 8.2e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIR 63
           STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IR
Sbjct: 163 STGNFSGEKLNGQNYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIR 222

Query: 64  SMLINSMESQIGKPLLYVATAKDL 88
           SMLINSME QIGKPLLY  TAKDL
Sbjct: 223 SMLINSMEPQIGKPLLYATTAKDL 246

[Close]

BLAST of PI0011526 vs. NCBI nr
Match: TYK16957.1 (ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 8.2e-33
Identity = 72/84 (85.71%), Postives = 75/84 (89.29%), Query Frame = 0


Query: 4   STGNFSGEKLNGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIR 63
           STGNFSGEKLNGQN+FSWSQSIKMFLEGR QFGFLTGEI RPPPG+  ERLW+ EDS IR
Sbjct: 743 STGNFSGEKLNGQNYFSWSQSIKMFLEGRYQFGFLTGEIVRPPPGDALERLWKGEDSLIR 802

Query: 64  SMLINSMESQIGKPLLYVATAKDL 88
           SMLINSME QIGKPLLY  TAKDL
Sbjct: 803 SMLINSMEPQIGKPLLYATTAKDL 826

[Close]

BLAST of PI0011526 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 5.3e-06
Identity = 23/80 (28.75%), Postives = 45/80 (56.25%), Query Frame = 0


Query: 7   NFSGEKL--NGQNFFSWSQSIKMFLEGRQQFGFLTGEIPRPPPGNDQERLWRAEDSFIRS 66
           +FS +KL  +  N+ +W    + FL   ++FGF+ G +P+P P +   + W   ++ +  
Sbjct: 29  DFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMY 88

Query: 67  MLINSMESQIGKPLLYVATA 85
            L+NSM  ++ + ++Y  TA
Sbjct: 89  WLMNSMTDKLLESVMYAETA 108

The following BLAST results are available for this feature:

BLAST of PI0011526 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011526 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BJK7	4.0e-33	85.71	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0...	[more]
A0A5D3C4T4	4.0e-33	85.71	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00...	[more]
A0A5A7SM64	4.0e-33	85.71	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold130G0...	[more]
A0A5A7V0Y9	4.0e-33	85.71	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00...	[more]
A0A5A7UGB2	4.0e-33	85.71	Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055...	[more]

BLAST of PI0011526 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ99952.1	8.2e-33	85.71	Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu...	[more]
TYK08054.1	8.2e-33	85.71	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
KAA0034386.1	8.2e-33	85.71	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYJ97256.1	8.2e-33	85.71	Beta-galactosidase [Cucumis melo var. makuwa]	[more]
TYK16957.1	8.2e-33	85.71	ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo var. makuwa]	[more]

BLAST of PI0011526 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	5.3e-06	28.75	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029472	Retrotransposon Copia-like, N-terminal	PFAM	PF14244	Retrotran_gag_3	coord: 12..46 e-value: 1.2E-8 score: 34.6
None	No IPR available	PANTHER	PTHR37610:SF47	SUBFAMILY NOT NAMED	coord: 7..86
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 7..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011526.1	PI0011526.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0006116	NADH oxidation
biological_process	GO:0016310	phosphorylation
biological_process	GO:0000723	telomere maintenance
cellular_component	GO:0043564	Ku70:Ku80 complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003954	NADH dehydrogenase activity
molecular_function	GO:0042162	telomeric DNA binding