PI0011479 (gene) Melon (PI 482460) v1

Overview


Name	PI0011479
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Arabinogalactan peptide 23-like
Location	chr08: 9828791 .. 9828979 (-)
RNA-Seq Expression	PI0011479
Synteny	PI0011479

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAATGAAGAACTTTGCCTGCGCCGCCTTCGTCGCTGTTGCTGCCTCCCTGAGTATGGTTTTGGCCTCTGATGAAGCAGCAGGCCCAGCACCCAGCCCATCCAGCGGTGCTTCCGCTACTTTGCCCGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTACCTTCAGTAA

mRNA sequence

ATGGAAATGAAGAACTTTGCCTGCGCCGCCTTCGTCGCTGTTGCTGCCTCCCTGAGTATGGTTTTGGCCTCTGATGAAGCAGCAGGCCCAGCACCCAGCCCATCCAGCGGTGCTTCCGCTACTTTGCCCGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTACCTTCAGTAA

Coding sequence (CDS)

ATGGAAATGAAGAACTTTGCCTGCGCCGCCTTCGTCGCTGTTGCTGCCTCCCTGAGTATGGTTTTGGCCTCTGATGAAGCAGCAGGCCCAGCACCCAGCCCATCCAGCGGTGCTTCCGCTACTTTGCCCGTCGTCGGGACGTTGCTAGGTGCATCTGCTGCCTCTCTCATTGCTTACTACCTTCAGTAA

Protein sequence

MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYYLQ

Homology

[Close]

BLAST of PI0011479 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-07
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYY 60
          MEMK  AC    A AAS++ V+A++E   PAP P+S ASA LP +G+L+GAS  SL +YY
Sbjct: 1  MEMKKIACGVLFA-AASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of PI0011479 vs. ExPASy TrEMBL
Match: A0A5D3E271 (Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold208G001050 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.8e-17
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYY 60
          MEMKNFACAAF+AV ASLSMVLASDEAA PAP PSSG SATLPVVGTLLGASAASLIAY 
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of PI0011479 vs. ExPASy TrEMBL
Match: A0A2K1ZXB0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.8e-09
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1  MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYY 60
          ME+K  +CA  V VAAS+S  LA+DE + PAPSP+SGASATLPVVG+L+GAS  S  AYY
Sbjct: 1  MELKKISCAVLV-VAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 61

[Close]

BLAST of PI0011479 vs. ExPASy TrEMBL
Match: A0A059DIY4 (Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02403 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.4e-08
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 1  MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYY 60
          M+MK  +CA  VA AAS+S VLASD++  PAP PSSGASA LPV G+L+GAS  S  AYY
Sbjct: 34 MDMKKISCAVLVA-AASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 61 LQ 63
          LQ
Sbjct: 94 LQ 94

[Close]

BLAST of PI0011479 vs. ExPASy TrEMBL
Match: A0A2K1XB13 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G052000 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.1e-08
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 1  MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYY 60
          M +K  +CA  V VAAS+S  LA+DE + PAPSP+SGASATLPVVG+L+GAS  S  AYY
Sbjct: 1  MGLKKISCAVLV-VAASMSAALAADEVSAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 LQ 63
           Q
Sbjct: 61 FQ 61

[Close]

BLAST of PI0011479 vs. ExPASy TrEMBL
Match: A0A3N7FUN0 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G268801 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 43/62 (69.35%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1   MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYY 60
           MEMK  ACA   A AAS+S V+A DE A PAPSP+SGAS +LPVVG+L+GAS ASLIA Y
Sbjct: 57  MEMKKIACAILFA-AASVSAVMA-DEVAAPAPSPTSGASVSLPVVGSLVGASLASLIALY 116

Query: 61  LQ 63
           LQ
Sbjct: 117 LQ 116

[Close]

BLAST of PI0011479 vs. NCBI nr
Match: KAA0035760.1 (arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinogalactan peptide 23-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 5.9e-17
Identity = 56/62 (90.32%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1  MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYY 60
          MEMKNFACAAF+AV ASLSMVLASDEAA PAP PSSG SATLPVVGTLLGASAASLIAY 
Sbjct: 1  MEMKNFACAAFIAVVASLSMVLASDEAASPAPGPSSGVSATLPVVGTLLGASAASLIAYC 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 62

[Close]

BLAST of PI0011479 vs. NCBI nr
Match: KAE8649766.1 (hypothetical protein Csa_011936, partial [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.6e-14
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0


Query: 5  NFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYYLQ 63
          NFACAAF+ VAASLSMVLASDEAA PAP PSS ASATLPVVGTLLGASAASLIAY LQ
Sbjct: 1  NFACAAFITVAASLSMVLASDEAASPAPGPSSAASATLPVVGTLLGASAASLIAYCLQ 58

[Close]

BLAST of PI0011479 vs. NCBI nr
Match: PNT29922.1 (hypothetical protein POPTR_006G056200 [Populus trichocarpa])

HSP 1 Score: 70.5 bits (171), Expect = 5.9e-09
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1  MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYY 60
          ME+K  +CA  V VAAS+S  LA+DE + PAPSP+SGASATLPVVG+L+GAS  S  AYY
Sbjct: 1  MELKKISCAVLV-VAASMSAALAADEISAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 LQ 63
          LQ
Sbjct: 61 LQ 61

[Close]

BLAST of PI0011479 vs. NCBI nr
Match: KCW90250.1 (hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis])

HSP 1 Score: 67.4 bits (163), Expect = 5.0e-08
Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 1  MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYY 60
          M+MK  +CA  VA AAS+S VLASD++  PAP PSSGASA LPV G+L+GAS  S  AYY
Sbjct: 34 MDMKKISCAVLVA-AASMSAVLASDDSPAPAPGPSSGASAALPVFGSLVGASVVSFFAYY 93

Query: 61 LQ 63
          LQ
Sbjct: 94 LQ 94

[Close]

BLAST of PI0011479 vs. NCBI nr
Match: PNS97963.1 (hypothetical protein POPTR_016G052000 [Populus trichocarpa])

HSP 1 Score: 66.6 bits (161), Expect = 8.5e-08
Identity = 39/62 (62.90%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 1  MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYY 60
          M +K  +CA  V VAAS+S  LA+DE + PAPSP+SGASATLPVVG+L+GAS  S  AYY
Sbjct: 1  MGLKKISCAVLV-VAASMSAALAADEVSAPAPSPTSGASATLPVVGSLIGASLVSFFAYY 60

Query: 61 LQ 63
           Q
Sbjct: 61 FQ 61

[Close]

BLAST of PI0011479 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-08
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1  MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSPSSGASATLPVVGTLLGASAASLIAYY 60
          MEMK  AC    A AAS++ V+A++E   PAP P+S ASA LP +G+L+GAS  SL +YY
Sbjct: 1  MEMKKIACGVLFA-AASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYY 60

Query: 61 L 62
          L
Sbjct: 61 L 60

[Close]

BLAST of PI0011479 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 1.1e-05
Identity = 33/62 (53.23%), Postives = 42/62 (67.74%), Query Frame = 0


Query: 1  MEMKNFACAAFVAVAASLSMVLASDEAAGPAPSP-SSGASATLPVVGTLLGASAASLIAY 60
          MEMK  AC   V  AAS++ V+A+ E   PAP P +SGAS  +P +G+L+GAS  SL AY
Sbjct: 1  MEMKKIACGV-VFAAASMTAVMAA-EVGAPAPGPAASGASVAVPALGSLVGASLVSLFAY 60

Query: 61 YL 62
          YL
Sbjct: 61 YL 60

The following BLAST results are available for this feature:

BLAST of PI0011479 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	1.5e-07	54.10	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of PI0011479 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E271	2.8e-17	90.32	Arabinogalactan peptide 23-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A2K1ZXB0	2.8e-09	66.13	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_006G056200 PE=4 ...	[more]
A0A059DIY4	2.4e-08	64.52	Uncharacterized protein (Fragment) OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_A02...	[more]
A0A2K1XB13	4.1e-08	62.90	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_016G052000 PE=4 ...	[more]
A0A3N7FUN0	1.2e-07	69.35	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G268801 PE=4 ...	[more]

BLAST of PI0011479 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035760.1	5.9e-17	90.32	arabinogalactan peptide 23-like [Cucumis melo var. makuwa] >TYK29859.1 arabinoga...	[more]
KAE8649766.1	1.6e-14	89.66	hypothetical protein Csa_011936, partial [Cucumis sativus]	[more]
PNT29922.1	5.9e-09	66.13	hypothetical protein POPTR_006G056200 [Populus trichocarpa]	[more]
KCW90250.1	5.0e-08	64.52	hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]	[more]
PNS97963.1	8.5e-08	62.90	hypothetical protein POPTR_016G052000 [Populus trichocarpa]	[more]

BLAST of PI0011479 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	1.1e-08	54.10	arabinogalactan protein 23	[more]
AT2G41905.1	1.1e-05	53.23	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34672:SF11	SUBFAMILY NOT NAMED	coord: 1..62
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 1..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011479.1	PI0011479.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane