Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGATGGGGGCGGGTCAAGGTTCGACTGATAAAAGAAAATATAAGAAATTAGAAATGTCCATTTTCGTGGGAGAAAATCCAAAGTCTTGGATTTATCGAGTCGAACATTTTTTCAATATCCATGATTTAGCGAAAATAGAGAAGGTCAAAGTTGCAGTGGTGAGTTTCACTCAGGATGAGGTGAATTGGTTCAAGTGGAGTAACAATAGGAAGAAGGTGTTATCATGGGAAGACCTAAAAAATCGAATCTTTGATCACTTTCAACCTACTAGAGATGGAACGTACGTTGATTATCTAATGGACGCTCTTACAAGATTGGAGATCGGACTTCAAGTGGAGGTGATAAGCCACCATCCTAAGATGTTGGAGGAGTGTATGAAGGAAGCTCAACTGGCTAATGATCGAAATATAGCCCTAAAACTGGCTTTAAGTGAGTGGGGAGCCCATAGGCCATGTAAGAAGGAGACCACGCAACCCAATAAGGTCACTAATCTATACAAAAAAATGAACCAAAGGAGGGTGAAACAAAAATGA
mRNA sequence
ATGGCGATGGGGGCGGGTCAAGGTTCGACTGATAAAAGAAAATATAAGAAATTAGAAATGTCCATTTTCGTGGGAGAAAATCCAAAGTCTTGGATTTATCGAGTCGAACATTTTTTCAATATCCATGATTTAGCGAAAATAGAGAAGGTCAAAGTTGCAGTGGTGAGTTTCACTCAGGATGAGGTGAATTGGTTCAAGTGGAGTAACAATAGGAAGAAGGTGTTATCATGGGAAGACCTAAAAAATCGAATCTTTGATCACTTTCAACCTACTAGAGATGGAACGTACGTTGATTATCTAATGGACGCTCTTACAAGATTGGAGATCGGACTTCAAGTGGAGGTGATAAGCCACCATCCTAAGATGTTGGAGGAGTGTATGAAGGAAGCTCAACTGGCTAATGATCGAAATATAGCCCTAAAACTGGCTTTAAGTGAGTGGGGAGCCCATAGGCCATGTAAGAAGGAGACCACGCAACCCAATAAGGTCACTAATCTATACAAAAAAATGAACCAAAGGAGGGTGAAACAAAAATGA
Coding sequence (CDS)
ATGGCGATGGGGGCGGGTCAAGGTTCGACTGATAAAAGAAAATATAAGAAATTAGAAATGTCCATTTTCGTGGGAGAAAATCCAAAGTCTTGGATTTATCGAGTCGAACATTTTTTCAATATCCATGATTTAGCGAAAATAGAGAAGGTCAAAGTTGCAGTGGTGAGTTTCACTCAGGATGAGGTGAATTGGTTCAAGTGGAGTAACAATAGGAAGAAGGTGTTATCATGGGAAGACCTAAAAAATCGAATCTTTGATCACTTTCAACCTACTAGAGATGGAACGTACGTTGATTATCTAATGGACGCTCTTACAAGATTGGAGATCGGACTTCAAGTGGAGGTGATAAGCCACCATCCTAAGATGTTGGAGGAGTGTATGAAGGAAGCTCAACTGGCTAATGATCGAAATATAGCCCTAAAACTGGCTTTAAGTGAGTGGGGAGCCCATAGGCCATGTAAGAAGGAGACCACGCAACCCAATAAGGTCACTAATCTATACAAAAAAATGAACCAAAGGAGGGTGAAACAAAAATGA
Protein sequence
MAMGAGQGSTDKRKYKKLEMSIFVGENPKSWIYRVEHFFNIHDLAKIEKVKVAVVSFTQDEVNWFKWSNNRKKVLSWEDLKNRIFDHFQPTRDGTYVDYLMDALTRLEIGLQVEVISHHPKMLEECMKEAQLANDRNIALKLALSEWGAHRPCKKETTQPNKVTNLYKKMNQRRVKQK
Homology
BLAST of PI0011461 vs. ExPASy TrEMBL
Match:
A0A5D3DGC7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00940 PE=4 SV=1)
HSP 1 Score: 181.0 bits (458), Expect = 4.3e-42
Identity = 100/209 (47.85%), Postives = 130/209 (62.20%), Query Frame = 0
Query: 1 MAMGAGQGSTDKRKYKKLEMSIFVGENPKSWIYRVEHFFNIHDLAKIEKVKVAVVSFTQD 60
+A + GS+DK YKKLEM +F GENP+SWIYR EH+F+I++LA EKVKVAVVSF D
Sbjct: 69 IAPSSAGGSSDKSMYKKLEMPVFNGENPESWIYRAEHYFDINELADEEKVKVAVVSFGPD 128
Query: 61 EVNWFKWSNNRKKVLSWEDLKNRIFDHFQP-------------TRDGTYVDY-------- 120
VNWF+WSNNRKK+ SWEDLK R+F+HF+ +DG Y DY
Sbjct: 129 AVNWFRWSNNRKKISSWEDLKKRMFEHFKAPGEGSLGARLIRIRQDGLYADYLKKFLEYS 188
Query: 121 ----------LMDA-LTRLEIGLQVEVISHHPKMLEECMKEAQLANDRNIALKLALSEWG 178
L+DA +T LEI LQ EVIS HP LE+CM+EAQ+ +DR+ A+KLAL++W
Sbjct: 189 APLPEMAESVLIDAFITGLEINLQAEVISRHPMTLEDCMREAQMVSDRDYAIKLALNDWR 248
BLAST of PI0011461 vs. ExPASy TrEMBL
Match:
A0A5D3DTH7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G001150 PE=4 SV=1)
HSP 1 Score: 177.9 bits (450), Expect = 3.6e-41
Identity = 98/208 (47.12%), Postives = 130/208 (62.50%), Query Frame = 0
Query: 1 MAMGAGQGSTDKRKYKKLEMSIFVGENPKSWIYRVEHFFNIHDLAKIEKVKVAVVSFTQD 60
M +G +GS+DK KYKKL++ +F GENP+SW Y+ EH F+I++LA EKVKVA+VSF +D
Sbjct: 69 MTLGFAKGSSDKSKYKKLKIPVFSGENPESWTYQAEHNFDINELADEEKVKVAIVSFGED 128
Query: 61 EVNWFKWSNNRKKVLSWEDLKNRIFDHFQP-------------TRDGTYVDY-------- 120
VNWF+WSNNRKKV+SWEDLK R+F HF+ +DG Y DY
Sbjct: 129 TVNWFRWSNNRKKVMSWEDLKRRMFKHFKAPEEGSLEARHIRIKQDGLYADYLKKFLEYS 188
Query: 121 ----------LMDA-LTRLEIGLQVEVISHHPKMLEECMKEAQLANDRNIALKLALSEWG 174
L+DA + LE LQ EV HP LE CM+EAQ+ +DR++A+KLAL++W
Sbjct: 189 APLPEMAESVLIDAFIIGLETNLQAEVKGRHPVTLEACMREAQMVSDRDLAIKLALNDWR 248
BLAST of PI0011461 vs. ExPASy TrEMBL
Match:
A0A5A7T8C0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00570 PE=4 SV=1)
HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 92/171 (53.80%), Postives = 118/171 (69.01%), Query Frame = 0
Query: 10 TDKRKYKKLEMSIFVGENPKSWIYRVEHFFNIHDLAKIEKVKVAVVSFTQDEVNWFKWSN 69
TD+ KYKKLEM +F+GENPKSW+YR EHFF I++L + EKVKVAVVSF QDEV+W++WS+
Sbjct: 79 TDRSKYKKLEMPMFLGENPKSWVYRAEHFFEINNLPESEKVKVAVVSFGQDEVDWYRWSH 138
Query: 70 NRKKVLSWEDLKNRIFDHFQPT-------------RDGTYVDY----------------- 129
NRKKV SWEDLK+R+F+ F+ + +DG+Y +Y
Sbjct: 139 NRKKVESWEDLKSRMFEFFRDSGQKSLGARLIRIQQDGSYNEYVKKFVTYSAPLPYMAES 198
Query: 130 -LMDA-LTRLEIGLQVEVISHHPKMLEECMKEAQLANDRNIALKLALSEWG 149
L+DA +T LE LQ EVIS HP+ LE+CM+EAQL NDRN+ALKL+ E G
Sbjct: 199 VLVDAFVTGLEPSLQAEVISRHPQTLEDCMREAQLVNDRNLALKLSKMELG 249
BLAST of PI0011461 vs. ExPASy TrEMBL
Match:
A0A5A7UT21 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G001910 PE=4 SV=1)
HSP 1 Score: 176.4 bits (446), Expect = 1.1e-40
Identity = 97/185 (52.43%), Postives = 120/185 (64.86%), Query Frame = 0
Query: 11 DKRKYKKLEMSIFVGENPKSWIYRVEHFFNIHDLAKIEKVKVAVVSFTQDEVNWFKWSNN 70
D+ KYKKLEM +F GENP+SW+YR EHFF I++L + EKVKVAVVSF QDEV+W++WS+N
Sbjct: 78 DRSKYKKLEMPMFQGENPESWVYRAEHFFEINNLPEAEKVKVAVVSFGQDEVDWYRWSHN 137
Query: 71 RKKVLSWEDLKNRIFDHFQPT-------------RDGTYVDY------------------ 130
R+KV SWEDLK R+F+ F+ T ++G+Y DY
Sbjct: 138 RRKVESWEDLKTRMFEFFRDTGQKSLGARLIRIQQEGSYSDYVKKFVNYSAPLPHMAESV 197
Query: 131 LMDA-LTRLEIGLQVEVISHHPKMLEECMKEAQLANDRNIALKLALSEWGAHRPCKKETT 164
L DA LT LE LQ EV+S HP+ LEECM AQL NDRN+ALKLA +E G P K+ T
Sbjct: 198 LRDAFLTGLEPALQAEVMSRHPQTLEECMMAAQLVNDRNLALKLAQAEMGIMEP-KRSET 257
BLAST of PI0011461 vs. ExPASy TrEMBL
Match:
A0A5D3DUJ0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001340 PE=4 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 1.4e-40
Identity = 99/206 (48.06%), Postives = 128/206 (62.14%), Query Frame = 0
Query: 4 GAGQGSTDKRKYKKLEMSIFVGENPKSWIYRVEHFFNIHDLAKIEKVKVAVVSFTQDEVN 63
G GS+D+ KYKKLE+ +F GENP++WIYR EH+F+I++L EKVKVAVVSF DEVN
Sbjct: 72 GFAVGSSDRSKYKKLEIPVFNGENPETWIYRAEHYFDINELVDEEKVKVAVVSFGPDEVN 131
Query: 64 WFKWSNNRKKVLSWEDLKNRIFDHFQP-------------TRDGTYVDY----------- 123
WF+WSNNRKKV +WEDLK R+F+HF+ +DG Y DY
Sbjct: 132 WFRWSNNRKKVKTWEDLKRRMFEHFKSPGEGSLGARLIRIKQDGCYSDYLKKFLEYSAPL 191
Query: 124 -------LMDA-LTRLEIGLQVEVISHHPKMLEECMKEAQLANDRNIALKLALSEWGAHR 174
L+DA +T LE LQ EV S HP LEECM+EAQ+ +DR++A+ LAL +W +
Sbjct: 192 PEMAESVLIDAFVTGLETNLQAEVKSRHPVTLEECMREAQMVSDRDLAINLALDDWRGNG 251
BLAST of PI0011461 vs. NCBI nr
Match:
TYK22652.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 181.0 bits (458), Expect = 8.8e-42
Identity = 100/209 (47.85%), Postives = 130/209 (62.20%), Query Frame = 0
Query: 1 MAMGAGQGSTDKRKYKKLEMSIFVGENPKSWIYRVEHFFNIHDLAKIEKVKVAVVSFTQD 60
+A + GS+DK YKKLEM +F GENP+SWIYR EH+F+I++LA EKVKVAVVSF D
Sbjct: 69 IAPSSAGGSSDKSMYKKLEMPVFNGENPESWIYRAEHYFDINELADEEKVKVAVVSFGPD 128
Query: 61 EVNWFKWSNNRKKVLSWEDLKNRIFDHFQP-------------TRDGTYVDY-------- 120
VNWF+WSNNRKK+ SWEDLK R+F+HF+ +DG Y DY
Sbjct: 129 AVNWFRWSNNRKKISSWEDLKKRMFEHFKAPGEGSLGARLIRIRQDGLYADYLKKFLEYS 188
Query: 121 ----------LMDA-LTRLEIGLQVEVISHHPKMLEECMKEAQLANDRNIALKLALSEWG 178
L+DA +T LEI LQ EVIS HP LE+CM+EAQ+ +DR+ A+KLAL++W
Sbjct: 189 APLPEMAESVLIDAFITGLEINLQAEVISRHPMTLEDCMREAQMVSDRDYAIKLALNDWR 248
BLAST of PI0011461 vs. NCBI nr
Match:
XP_031745419.1 (uncharacterized protein LOC116405630 [Cucumis sativus])
HSP 1 Score: 179.5 bits (454), Expect = 2.6e-41
Identity = 98/186 (52.69%), Postives = 119/186 (63.98%), Query Frame = 0
Query: 5 AGQGSTDKRKYKKLEMSIFVGENPKSWIYRVEHFFNIHDLAKIEKVKVAVVSFTQDEVNW 64
+G S D+ KYKKLEM +F G NP+SW YR EHFF+I+DL + EKVKVAVVSF Q+EV+W
Sbjct: 32 SGGSSADRSKYKKLEMPLFTGVNPESWAYRAEHFFDINDLPEAEKVKVAVVSFGQEEVDW 91
Query: 65 FKWSNNRKKVLSWEDLKNRIFDHFQPT-------------RDGTYVDY------------ 124
F+WSN RK+V SWEDLK R+FD F T ++ +Y +Y
Sbjct: 92 FRWSNRRKRVESWEDLKERMFDFFNDTGQQSLGARLIRIKQEVSYSEYVKKFVTYSAPLP 151
Query: 125 ------LMDA-LTRLEIGLQVEVISHHPKMLEECMKEAQLANDRNIALKLALSEWGAHRP 159
L+DA LT LE LQ EVIS HP+ LEECMKEAQLANDRNIALKLA+ E P
Sbjct: 152 DMAESVLLDAFLTGLEPSLQAEVISRHPQTLEECMKEAQLANDRNIALKLAMEELDIVEP 211
BLAST of PI0011461 vs. NCBI nr
Match:
XP_031742100.1 (uncharacterized protein LOC116404055 [Cucumis sativus])
HSP 1 Score: 179.5 bits (454), Expect = 2.6e-41
Identity = 98/186 (52.69%), Postives = 119/186 (63.98%), Query Frame = 0
Query: 5 AGQGSTDKRKYKKLEMSIFVGENPKSWIYRVEHFFNIHDLAKIEKVKVAVVSFTQDEVNW 64
+G S D+ KYKKLEM +F G NP+SW YR EHFF+I+DL + EKVKVAVVSF Q+EV+W
Sbjct: 73 SGGSSADRSKYKKLEMPLFTGVNPESWAYRAEHFFDINDLPEAEKVKVAVVSFGQEEVDW 132
Query: 65 FKWSNNRKKVLSWEDLKNRIFDHFQPT-------------RDGTYVDY------------ 124
F+WSN RK+V SWEDLK R+FD F T ++ +Y +Y
Sbjct: 133 FRWSNRRKRVESWEDLKERMFDFFNDTGQQSLGARLIRIKQEVSYSEYVKKFVTYSAPLP 192
Query: 125 ------LMDA-LTRLEIGLQVEVISHHPKMLEECMKEAQLANDRNIALKLALSEWGAHRP 159
L+DA LT LE LQ EVIS HP+ LEECMKEAQLANDRNIALKLA+ E P
Sbjct: 193 DMAESVLLDAFLTGLEPSLQAEVISRHPQTLEECMKEAQLANDRNIALKLAMEELDIVEP 252
BLAST of PI0011461 vs. NCBI nr
Match:
TYK26802.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 177.9 bits (450), Expect = 7.5e-41
Identity = 98/208 (47.12%), Postives = 130/208 (62.50%), Query Frame = 0
Query: 1 MAMGAGQGSTDKRKYKKLEMSIFVGENPKSWIYRVEHFFNIHDLAKIEKVKVAVVSFTQD 60
M +G +GS+DK KYKKL++ +F GENP+SW Y+ EH F+I++LA EKVKVA+VSF +D
Sbjct: 69 MTLGFAKGSSDKSKYKKLKIPVFSGENPESWTYQAEHNFDINELADEEKVKVAIVSFGED 128
Query: 61 EVNWFKWSNNRKKVLSWEDLKNRIFDHFQP-------------TRDGTYVDY-------- 120
VNWF+WSNNRKKV+SWEDLK R+F HF+ +DG Y DY
Sbjct: 129 TVNWFRWSNNRKKVMSWEDLKRRMFKHFKAPEEGSLEARHIRIKQDGLYADYLKKFLEYS 188
Query: 121 ----------LMDA-LTRLEIGLQVEVISHHPKMLEECMKEAQLANDRNIALKLALSEWG 174
L+DA + LE LQ EV HP LE CM+EAQ+ +DR++A+KLAL++W
Sbjct: 189 APLPEMAESVLIDAFIIGLETNLQAEVKGRHPVTLEACMREAQMVSDRDLAIKLALNDWR 248
BLAST of PI0011461 vs. NCBI nr
Match:
XP_031737605.1 (uncharacterized protein LOC116402475 [Cucumis sativus])
HSP 1 Score: 177.6 bits (449), Expect = 9.8e-41
Identity = 99/207 (47.83%), Postives = 131/207 (63.29%), Query Frame = 0
Query: 2 AMGAGQGSTDKRKYKKLEMSIFVGENPKSWIYRVEHFFNIHDLAKIEKVKVAVVSFTQDE 61
A+ +G + D+ KYKKLEM +F G NP+SW YR EHFF+I++L + EKVKVAVVSF Q+E
Sbjct: 67 AVESGGSNADRSKYKKLEMPLFTGVNPESWAYRAEHFFDINNLPEAEKVKVAVVSFGQEE 126
Query: 62 VNWFKWSNNRKKVLSWEDLKNRIFDHFQPT-------------RDGTYVDY--------- 121
V+WF+WS++RK+V SWEDLK R+FD F T ++G+Y DY
Sbjct: 127 VDWFRWSHHRKRVESWEDLKERMFDFFNDTGQQSLGARLIRIRQEGSYSDYVKKFVIYSA 186
Query: 122 ---------LMDA-LTRLEIGLQVEVISHHPKMLEECMKEAQLANDRNIALKLALSEWGA 177
L+DA LT LE LQ EVIS HP+ LEECMKEAQL NDRNIALKLA+ E
Sbjct: 187 PLPDMAKSILLDAFLTGLEPALQAEVISRHPQTLEECMKEAQLVNDRNIALKLAMEEMDK 246
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DGC7 | 4.3e-42 | 47.85 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DTH7 | 3.6e-41 | 47.12 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7T8C0 | 1.1e-40 | 53.80 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A5A7UT21 | 1.1e-40 | 52.43 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
A0A5D3DUJ0 | 1.4e-40 | 48.06 | Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |