PI0011460 (gene) Melon (PI 482460) v1

Overview
NamePI0011460
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionS4 RNA-binding domain-containing protein
Locationchr03: 7146160 .. 7155015 (+)
RNA-Seq ExpressionPI0011460
SyntenyPI0011460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTCAATCGTATTCGCTCTCCAATCGTATAAACACGGAAGCGAGTTCGCGAATTCAGTAAACTGTTTCACAGAACAAGAATTTCCATTCAAAAAATGGTTTCATTAGCACCTTCTTCACTCTCATTTCTCTCAAAACCTTCGTTAATCTTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCACTTTCCTCCAATTCCACTCCCAACGCCTCCTCTTCATCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCAAAACCCAAGCCCAAATCCGAAGTTGAAGATCAGTTTCAGTTCATCGATCGAAATACCGGCGGTCAGCTCTTCGTTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAATCTCATCCTCCTACACGGTTCCTTCATTCCATGTCGGAGGGTGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGTTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAATCGTCGCAACGTCTCAGTAAAGTTCTTGCTGCCGCTGGAGGTTTGTGCTTCTCTAACCAAAATGCTAATTCTGTTACTCTGCATTCCTTTCCGTGTTATGTGCTCTTTACTTGTTGGTGTTTGGTTCTTGGCGTGGTGGCTAGAAGTCTTGTTATTTTCGGAAACTATTTAGTTATGTCGACAACAGGTTTTGGCAATAGGACGGAAGCAATAAGCATCAATTTTTAGTTTAGTTAGTAGAATTTGTAAGTATAGTTGTAAAATCGGTGCTAAATTTGATTTACTTGGCATGAACTTCAAGTTATTTATTACACGTGGATAGAAATGGAGAGATTGAACAAACTGAGCGGTTTCTACACTAGTGTTATGCGATATACTAGCTTAAATATGGTCTCCACCAACAACTATACTCCAAGAAAAAAGAATCAAAACAGCACAACGGACCCAGATTAACGAAGGCTCTAATCAATTGAGTAGAGGAATATTTAATAGGAGCTTAAGCTCTTGTTGGAATGAACCTTACGTGACTCTTTCTTTAGGGCCTCATCCTTTCAATTCGTTCAGATGCATTCTTTCATGAGTGGAGATATCTTTTCAGGTCTTAACCAACTTGAAGGAGGGTCATATTTTTTAGAAATATTTGCTTTCATTGAGAAAGAATGAAAGAATACAAGACATTAAAAAGAACCAAGCCCACAAAAACTCCACTAAAGAAAGAGTTTCCAACTAGGTAAAATAGTGTGTGAGTAACTTGAAGAAGGGACATGATTATTTGGATGACCACTAATTAATCTATAAATATATATCTTATTCAACTTGGATCTTAATCTTTTCCATAACTACTTTTTTCCATGAAACTTTTTCACTTTTTATTTATAAAGTCGTTGACATTTGGTTTATTCTCCACAAAGTTGAATTCATTGGATATTGTGAACGAGGTATTGCTTTTGCAAGAAACTTAGGTACTAGAGTGAGTAAGTTTGTTATAATGTGAATTTGTTGGGCTTAGACTCTCTTCTGTGTACAAGGTTCGGTATTTTCTGATTTTTGGTGATATTATTCATATTGCAGCTCTTCCATCTCGAGCCTTCTATTATTCTTGTTCTTGCAACATCTACTTATTTGTGGCCTTATTTTTTTCTCACCGTCTATGCATACTTTTTGATTTTGCATGTTTGATAGTCTGTGATCTGTTATTTGCTATTGGTTAGTTTAAGAGAAATTCTTCTCTTTGAGGTCCATTCTCATTGTAAAACCACGAATGGCCGACTGTGTAAAATTGACATGTACTGTAAAAATGCGTTTGGCAAGCCATGGTAATAAGATCAATTGTTTATAAAATTAAATGTTGGAACATGTTGGATAATGCGTTTGGTAAGCCATGGTGTACTCTCTCAAAGCTCTTCAGCAACTACAGCATCCAAGATCTAAATTTAAATTGGAGTGCATTTATTTTACAGCTTGATAATGGATCTTTTGTCTTTATTGTACTGTTTTTGTATTCTCCTTCTGCGTTACTATTACTTTGTATTAGATCCTTTAATAGTCATGACCTAGTGAAGATTTCTGTTTTGAAAGTTAGTTCCGGATATATGAGGGCGTTAAGGGGGTGTCAACCTAGTTGAGATGTTTGAGTGTGTCTGTTGATCCTCTATGAAAAGCTATTGTATAATCCTCTTGTACTATGAGTTTTTGTCTCATTTTGACTTATTAATAAAGCGACTTGTTTCCGTTAAAAAAAAACCATTTGGCCCAAGAGAAAGGAAGAGGTAGAGATATCTTGTGGAGGTCTGGACTACAACCTGGTTAATATTTGCTCCCTTTTTGGTATTTGTTTTCAAAGAGTTGTTCTATCTATCCTCTATCCATTCTCCCCAACAACTGGATCCTTTTTTACAGTGGTTGGCACTTAAGTTGGAATGTTTCTGTAGAATACCTTGTTGTTTCTAGCTAGCCTCAAGCCCTGTTAGGACGGGGGCTGCGGATGAAAATTCAGCTGTGTACAATTTGGTCGAGCTTGTAAGGATAAATTATAATTTTTTAATTTTTTTTGTGTTATATTGTTAGCATTGGTCATGGAGTATTCTGTTTCGTCATTCTCTACAGTGTCCTTGTATATATTAAAACAATTGCTTTCATTGAGAAAAAATGAAAGAATACAGAGGCATACAAAAGAACAAGTCCACTAAAACACCCAATCAAAATGAAGGGGTTCCAACTAAGCAAAATGTTTCCTAGAGAATAGTCTAAAAAAAGCTTCGAAACAGAAGCCCAAAGGGACACATGAAAATTTCACCGAAGACCAAATTTCACAAGGGTCCTTGTCCCTACCACTAAACACTCTATCATTCCTCTCCCCCAATATCCCAAACAATTGTACACAGCCAACAAGCCACAAAAACTCTCTTTAAAAGGCGGATGGAGGAGGAACTCCTTGATTGCCGCACAAACATCTCTCTGTCCAGCAGTGTCCTGTTTACATTAATTACCATTGTGCACTTAAGATCTCATAGTTGGTAATGTACTCCTCCTTTGTTTTTCAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGGTTGGTTTTTATGTAATTTGGGGTGTATGGATTTTGTCTTAACTATGAAGGTATAAATGATTTCACCTTTCTGCAGACTCGGGTGGATCCTGCAAGAGACATTATTTACGTGAATGGAAATAGGCTTCCTAAGAAACTACCACCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTAAGTCACGTATTCTCTAAGATCAATTTCCCTTTCCTACCCCAAGCTTCTCTTGGGAACTTGGCTTTTAGGTTCTTCCGTTGCTAATCTATAATTGAATGCATGGCAGGTATATTTGTTCATCTGGGAAAAAAGAGTCAAAATCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGTATGTCAAACTCAAACCTACTGATCATACCGTTTTCAAGCAAAAGAGTGATAACCTTATGATCGTTTTGATGCAAGAAATATAGTTTGGAAGTTATTGAACTACAACTTTGCATTTGCAGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGTATGCCATACATACTTCTTATGTTTGCCTCCTTATTTAGGATTTCTGTACAAAAAGTTTGGAGTTTAAAGGATAGATCTTGAACCCTTTGCAAAATTACCGTCGATTTTCTTTTTCAGGAGATTTTGCTCAAAGTATTTCACATCCTTCATCTGGTTTATCGAAGGAGTAAGTGATTTAAATTTATTTCCTTACTCTTTCATTTTGCTCTGTAAAGTTACCTACAAAAGTAACTTCTGGCATTTTTTTCAGGGAGTAATTTAGAGATAAACTGATTTTTACAAATCTTTGAGACTATAAACATCATATCAGGAATGATTGTGGGCTATGGCTTATAAATCTGTGGCGTATTTATTGAATGAAAATTACTAGAACCTTTATCTACAATTTCAGGGATGAGAAATGTTGTACTGATCTTCCTTTTTCGTTCTTTTTTCCCTATAAACTTTTGAATTAGAGCATTTTCTTTTGTATATTGTGCTTCCCAGTACATATAGCTTTTAAAGTTTTGAATGTTGAATTTCTGAAAAATGAAAATGCAACGTTTTCCTTTATAATTGTAGATACATTGCAGCAATAGATGGCGCTGTTAGTAAGCAGAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCTGTGGAGTTACTACCACGACAGCCAGATATATCAAGGCCTCGGCTGCGTATTGTGGTGCTTTATCCATCCATATTATAGTTTTTAAATATCTATCCACTTTCAGTGCATTCATCACTTCTTATTTGATCTAATTGGTCATGAAGTAATGATTATATAGACCAACAAAGTCTGTTGCTTTTTACCTTGAATGTTTTTTTTATCTGAGTTTTACTCTATTATTGTTGATGCTATACAGCAGTCTGTGGAGGAAAATGTATTAATACCATTTTTTCTGCATGCAGCGCTTGTGCATTAGCTCCCAACTAACTTACTGTGCTTTTGCAGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTTGTAAAAGCTGCTGGTCTAGAGGTTAGCATCTGTTCTAACCTTAGAAGACACTTGCCCATTGCTGTGATACTTTCCCCCCATAGCCATATAAGATGCAAATCAAGTAATATTATTTCACTTTTTCCATAATACTTTCTTAACAATAATGATAATAATGAGGAAGAAGAAGTGTTTCATTTTCTTTTTGGAGGCATTGTTGCATCTTTTTGTTCTTGTTGGTACCTCTGTATTGTAGACCTTTATTATAGTTAACTATAGTTTTTCATGGAAGATTTTTTTTGAACCTATAAATATAAACATGTATTTACCTACTTTGTGTGAGTTTCCCCCCTCCCTTATTCATGATAGCCACATTAAATACTCGGACATGAGGAAACTGGGAATATGACATCAAGGGAGCTATCTTTTTAGTGCATTTCAACTACTTGTTCTATTGCTTGCGTTTGTCTGCTAGTTCCATTTGCATGTGTAAATTCTGGAATATATTGAAACAGATATATTCATTAAAGCGTGTAAGGATCGGTGGCTTCAGACTTCCGTCAGATTTGGGGTAATTTCTTGTTATGATCATCTTTGATTTGTTTCTTTTATTTGTGAAATTTATTATTGTTTGGGAATGGGTACAAAATCGGATTAGATGATTCACTTGCAATTCATTTTCACATTACAGAAACCAAGTAATAAAGGTAAATAATTTCTCACTATTTTGCATGCAAGTATTCGGAAATGTGGGTGACCAGTATGTGTCAGCATATTATAACTATGATATGCTGTCAGAAAATTAACCAAATAAAAACACCTTTTTCAACCGAACAACAAAAATTTTAAAAGTTTATTTTTGAAGATAAATTGAAAATAAAACAATTTTAATCCTTAAAATAAAATTTATCACAAATGATGATCGGGTGGATATAATTCATTCTCTCTGTCCTCAAGTCTTTCTTCAAGAATACCCTTTTTATCTCCGACCACAACCCTCAAGATTGTGCAACAAACTTCCTTTTTTTCATTTTTTTTTGGCAGTTTTTCGAGGTGAAACTAGAAATACTTCAAAGTTTTAGCTGCTTACTTGTGAACATGAGTGAGATAAATGTGTTGCCATGTAGATTTATTGAAAATTTCTGCATTATTTCAGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGACCTGAAGGCAATTGGTTGGAAAAGTTAAATTTCTGATGATTACAGAGTCGTCCGTAGTTGTTGAAGCTTGAATGTGGTAGGAATGATTTCAGACATACCACATGGAAGCAGAGTACTACTTCTCTAACTGCTGGGACAGTATATCAACATTTGAAGAGTTTGGATACTGTTTATTCCAGCTCACGCTTCACACCATGGCCACTGATTATTTACAATTATGCTTGGGTTGAAGATTTCAGTCAACAACATTGAAGGTGCAGGTTGTCAACCATCAAAATTTTATAGATAATATGAATGACGTGCGATGCCATTCTATTATCCAATTATTTTCATCTCTTTGTGTATTATACTGAACAGTAAAGGAACATACAGGTAGTTGCAATGGTGCTTGTTAACAAGACCTTGTGTTTCTCTCGCCTCATTGAAAGCGAGATTGGGAGGGTATTCTAACACCCTGCCTTAATCTTGTATTCATTACTCATATATGACTTCACATTTAATTATATTCTTTTCTCAAATTTCTTTAGTCATCTTCTCCTGCTTACAAGCTCTTCCAGCAGATGCATAGGATCAATATTGCGGACAGATGAGGTTTCTGTATGAAGCTCATAAAGCTTCGTGTAGCAAGGAAACATCTTATATGGATTGCAAGTTCAACATGCTCTGACTTTGAAAGCTTGTATGTTAGAAGGTAAGAGCCTTTACTGACAATATCCTTTCATTTTGTTCTTAACAACAACAAAAAAAAAAAAAAAAAATCCGTTCATTTTGTTGTTTTTATCTCTTGCATCTATGCCTATAGAATACAACATATAAATTTTCCTAGTCGCTATATGACTTGTCATCCTATGATTCTTCTGACTAGTTTTATGTTCGATATATTACGCTTCATTTGATTGAAACAAGATTTGCAGTACTGGATCATGTTAAACTAGAAAACTGAAATAAGGATGATTGAAAACAATACTTGACGTTGCAAGAAACCCACAAATAAGGGGAAAACTAAACAAAGCAACAATCCCATACACCCCAAAAGCAGGAGAGGAATTAAGCCAAAAACACTCATAGGTGGCATCACAAAGCCAAAAAGAGGAATGGAGATATCACAGAGCTAGTAATAGCATTCAAACCGACAAAGACCTCTCTCGAAGCAAAGATTTAGCCATTTTATCAAAAGAGATCGAGCTTTCTAGCTTAACTTTCTATTCAGTCCAGCAATTCATTTTTTTATGAAGATCCATGTTCTTTCTAAAATAACTTGAGATCTGGGAACATGGATTTTGCTCTAATCCCACAAATCCAAGATCATAACTGGCCTATTTCTTAGCTTTTTTACTTGTTAGCTTAACTTTCTATCTAGTCCTGCTAGCTTCAATTTTATTAAGATCTATGTACTATTTGAAAAAACTTGAGATCTGAGAACATGGTTTTTGTCCAAATTCCAGCTTGCACCGACTACAAACAAAACTGCCATCCCATGTCAGCAGAATGAAGCAACAAAAAACAAACGGACAGCAGAGCCTCTCTTGTTCTACAGTACCAACGGAATCGTCCTTTAGGTTGACAAAATGGATATTATACAATGGGATTTTGGTACATCCATTAACTCAAACTCCAAGAGGTACGAGGTTTGGTATTTCATTTTAACCTTCCTTGTTGTTTTTGCTTGGACTAAAACAAGATTTACCTTTGTGGTGTTTGAGAGTGATTCTAAAATTGTTAACCTCACCTTTATCATTTTCAAAATTATTTTGTATCTTACTTTTAATCATTCAAAACTAATTTTGATAATATGAAAATTATATTTAAAATAATCAATTTTGAGTGATTAAAAATGTGTATCGGAGCGGTTTTGAATATGTTTTTAATCATTCAAAAACTAGTTTTGATATGAAAATTATATTTAAAACAATCAATTTTAAGTGATTAAAAATGTGCTATGAAATCTTTTTGAAAATAAACAAAAGAGATTTTTAACAATTTCAATATCACTCCCAAATGCGCACTTACAAATCATGTTACGTCAAATATGAATGACTATGGTAACCCATTTGATGAAAATATGGAATTGATCATAGGTCTGCTAGATTTTTATCCCTTTTGAATTCTAACATCACGAGCTAAATGGGTGGAGTGTGAGAATTCAAACTCTTGATTGAGAACATATATTTTATCTAGTTGAGTTAGCGCAAGTTGCGTAAATATTATTGAGTGATAAAATAAAAAGTTAATTGAGAACCTTCTAGATGCCATTGTGTAACTAAAATTAGTTTAAAAATGTTAGACGTGCTTTTAGTCAAACAATAAATGATAGTTCTTCCAATAATGTTTAAAACGGGAGTGCTCCTTTGGATGTACCTATCTTGGTGCATCTCAAATATAGTCCAATAAAATGTTGTTACATGATATTTTTGTTTTTTTAAAATATATTTTTTTTTTCTAATTGCTTTTTGTGTGGTGGAGAAATGGGAAGTATCTAATCATTGCTCTATTCTTAGTATTCATTCCAAATTCACTACTATATTGGAAGGTGAAAGTGTTTCAAAATGATTAAAATGATACTATGAAATATATCATCAAAATTACATATTGATTTTCATCTTTGTAAGAAGAAAAGTATCGACTTACTCTTTGTGATTTATGGACATATTGAATTCTAGTATTCATATGTTCATTATGTCGTAGCAATTATTGTCATGCATGAACCAAATAGTTATTAGATTCCTAAAAGTAAAATATAAGTTAAAAGGAACTTTTGGTCCCTAAACTTGATAGAAAGTAACAATTTAATCTTTAAACTTTGGTTTGTAGTGGTTTGATCTATGTACTCTTAATTTTGTAATAATTTAGTTTTCAAACTCTATTATGTAACAATTTAAACTTTGTACTTTAGCAATTGTAACAATTTACTCTCTATAGTCGAAATTGTAATAATTTTTTTT

mRNA sequence

GCTCAATCGTATTCGCTCTCCAATCGTATAAACACGGAAGCGAGTTCGCGAATTCAGTAAACTGTTTCACAGAACAAGAATTTCCATTCAAAAAATGGTTTCATTAGCACCTTCTTCACTCTCATTTCTCTCAAAACCTTCGTTAATCTTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCACTTTCCTCCAATTCCACTCCCAACGCCTCCTCTTCATCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCAAAACCCAAGCCCAAATCCGAAGTTGAAGATCAGTTTCAGTTCATCGATCGAAATACCGGCGGTCAGCTCTTCGTTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAATCTCATCCTCCTACACGGTTCCTTCATTCCATGTCGGAGGGTGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGTTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAATCGTCGCAACGTCTCAGTAAAGTTCTTGCTGCCGCTGGAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGACTCGGGTGGATCCTGCAAGAGACATTATTTACGTGAATGGAAATAGGCTTCCTAAGAAACTACCACCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTATATTTGTTCATCTGGGAAAAAAGAGTCAAAATCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAAGTATTTCACATCCTTCATCTGGTTTATCGAAGGAATACATTGCAGCAATAGATGGCGCTGTTAGTAAGCAGAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCTGTGGAGTTACTACCACGACAGCCAGATATATCAAGGCCTCGGCTGCGTATTGTGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTTGTAAAAGCTGCTGGTCTAGAGATATATTCATTAAAGCGTGTAAGGATCGGTGGCTTCAGACTTCCGTCAGATTTGGGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGACCTGAAGGCAATTGGTTGGAAAAGTTAAATTTCTGATGATTACAGAGTCGTCCGTAGTTGTTGAAGCTTGAATGTGGTAGGAATGATTTCAGACATACCACATGGAAGCAGAGTACTACTTCTCTAACTGCTGGGACAGTATATCAACATTTGAAGAGTTTGGATACTGTTTATTCCAGCTCACGCTTCACACCATGGCCACTGATTATTTACAATTATGCTTGGGTTGAAGATTTCAGTCAACAACATTGAAGGTGCAGGTTGTCAACCATCAAAATTTTATAGATAATATGAATGACGTGCGATGCCATTCTATTATCCAATTATTTTCATCTCTTTGTGTATTATACTGAACAGTAAAGGAACATACAGGTAGTTGCAATGGTGCTTGTTAACAAGACCTTGTGTTTCTCTCGCCTCATTGAAAGCGAGATTGGGAGGGTATTCTAACACCCTGCCTTAATCTTGTATTCATTACTCATATATGACTTCACATTTAATTATATTCTTTTCTCAAATTTCTTTAGTCATCTTCTCCTGCTTACAAGCTCTTCCAGCAGATGCATAGGATCAATATTGCGGACAGATGAGGTTTCTGTATGAAGCTCATAAAGCTTCGTGTAGCAAGGAAACATCTTATATGGATTGCAAGTTCAACATGCTCTGACTTTGAAAGCTTGTATGTTAGAAGCTTGCACCGACTACAAACAAAACTGCCATCCCATGTCAGCAGAATGAAGCAACAAAAAACAAACGGACAGCAGAGCCTCTCTTGTTCTACAGTACCAACGGAATCGTCCTTTAGGTTGACAAAATGGATATTATACAATGGGATTTTGGTACATCCATTAACTCAAACTCCAAGAGGTACGAGGTTTGGTATTTCATTTTAACCTTCCTTGTTGTTTTTGCTTGGACTAAAACAAGATTTACCTTTGTGGTGTTTGAGAGTGATTCTAAAATTGTTAACCTCACCTTTATCATTTTCAAAATTATTTTGTATCTTACTTTTAATCATTCAAAACTAATTTTGATAATATGAAAATTATATTTAAAATAATCAATTTTGAGTGATTAAAAATGTGTATCGGAGCGGTTTTGAATATGTTTTTAATCATTCAAAAACTAGTTTTGATATGAAAATTATATTTAAAACAATCAATTTTAAGTGATTAAAAATGTGCTATGAAATCTTTTTGAAAATAAACAAAAGAGATTTTTAACAATTTCAATATCACTCCCAAATGCGCACTTACAAATCATGTTACGTCAAATATGAATGACTATGGTAACCCATTTGATGAAAATATGGAATTGATCATAGGTCTGCTAGATTTTTATCCCTTTTGAATTCTAACATCACGAGCTAAATGGGTGGAGTGTGAGAATTCAAACTCTTGATTGAGAACATATATTTTATCTAGTTGAGTTAGCGCAAGTTGCGTAAATATTATTGAGTGATAAAATAAAAAGTTAATTGAGAACCTTCTAGATGCCATTGTGTAACTAAAATTAGTTTAAAAATGTTAGACGTGCTTTTAGTCAAACAATAAATGATAGTTCTTCCAATAATGTTTAAAACGGGAGTGCTCCTTTGGATGTACCTATCTTGGTGCATCTCAAATATAGTCCAATAAAATGTTGTTACATGATATTTTTGTTTTTTTAAAATATATTTTTTTTTTCTAATTGCTTTTTGTGTGGTGGAGAAATGGGAAGTATCTAATCATTGCTCTATTCTTAGTATTCATTCCAAATTCACTACTATATTGGAAGGTGAAAGTGTTTCAAAATGATTAAAATGATACTATGAAATATATCATCAAAATTACATATTGATTTTCATCTTTGTAAGAAGAAAAGTATCGACTTACTCTTTGTGATTTATGGACATATTGAATTCTAGTATTCATATGTTCATTATGTCGTAGCAATTATTGTCATGCATGAACCAAATAGTTATTAGATTCCTAAAAGTAAAATATAAGTTAAAAGGAACTTTTGGTCCCTAAACTTGATAGAAAGTAACAATTTAATCTTTAAACTTTGGTTTGTAGTGGTTTGATCTATGTACTCTTAATTTTGTAATAATTTAGTTTTCAAACTCTATTATGTAACAATTTAAACTTTGTACTTTAGCAATTGTAACAATTTACTCTCTATAGTCGAAATTGTAATAATTTTTTTT

Coding sequence (CDS)

ATGGTTTCATTAGCACCTTCTTCACTCTCATTTCTCTCAAAACCTTCGTTAATCTTCAACCCCATTCGCGCCATTCCTCGCATTTCATGTTCACTTTCCTCCAATTCCACTCCCAACGCCTCCTCTTCATCTTCATCTTCATTGGAGTTCAACATCACATTCGCTCCCCCAAAACCCAAGCCCAAATCCGAAGTTGAAGATCAGTTTCAGTTCATCGATCGAAATACCGGCGGTCAGCTCTTCGTTCCGTGGATAGTTCGCGGCGAAGATGGGAACCTCAAGCTCCAATCTCATCCTCCTACACGGTTCCTTCATTCCATGTCGGAGGGTGAAACCAAGCCCAAGAAGAAGAAGGTTTCTGCTGTTAAACCCATAACTGAACCCCCTAAGCATTCGAAGGCTGCGCGAAGGTTTTATAATGAGAACATTAGGGAATCGTCGCAACGTCTCAGTAAAGTTCTTGCTGCCGCTGGAGTGGCATCAAGACGGAGTAGTGAAGAGCTTATATTTGGAGGCCGCGTTACTGTTAATGGTTCTGTTTGCAATACTCCTCAGACTCGGGTGGATCCTGCAAGAGACATTATTTACGTGAATGGAAATAGGCTTCCTAAGAAACTACCACCAAAAGTTTATCTAGCTCTGAACAAGCCAAAAGGGTATATTTGTTCATCTGGGAAAAAAGAGTCAAAATCTGTGATAAGTCTATTTGATGATTATTTGAAGAGTTGGGATAAAACATATCCAGGGCAACCCAAACCACGGCTCTTTACAGTTGGCAGACTTGATGTTGCAACGACTGGGTTGATTATAGTGACAAATGATGGAGATTTTGCTCAAAGTATTTCACATCCTTCATCTGGTTTATCGAAGGAATACATTGCAGCAATAGATGGCGCTGTTAGTAAGCAGAACCTGATAGCAATTAGTGAGGGAACAATAATTGATGGCGTCCATTGCACACCGGATTCTGTGGAGTTACTACCACGACAGCCAGATATATCAAGGCCTCGGCTGCGTATTGTGGTACATGAAGGAAGGAACCATGAAGTTAGGGAACTTGTAAAAGCTGCTGGTCTAGAGATATATTCATTAAAGCGTGTAAGGATCGGTGGCTTCAGACTTCCGTCAGATTTGGGGCTTGGAAGTTACACTGAACTAAAGCAAAGTGACCTGAAGGCAATTGGTTGGAAAAGTTAA

Protein sequence

MVSLAPSSLSFLSKPSLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPKPKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGETKPKKKKVSAVKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS
Homology
[Close]
BLAST of PI0011460 vs. ExPASy Swiss-Prot
Match: Q8L960 (Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SVR1 PE=1 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 1.7e-141
Identity = 273/419 (65.16%), Postives = 313/419 (74.70%), Query Frame = 0 

Query: 2   VSLAPSSLSFLSKP-SLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 61
           +S A S L   + P S  F PIR    + CS+        SSSSS  +EF+I+FAPPKPK
Sbjct: 10  ISFAASFLKIKAFPLSPRFFPIRT---LRCSV--------SSSSSEPIEFDISFAPPKPK 69

Query: 62  PKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGET--KPKKK- 121
           P S            T  QLF+PWIVR +DG LKLQS PP R +H+++   T   PKKK 
Sbjct: 70  PSSTHGGV-------TPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKD 129

Query: 122 -----------KVSAVKPITEP-------PKHSKAARRFYNENIRESSQRLSKVLAAAGV 181
                        SA    + P       PK SKAARRFYNEN +E  QRLSKVLAAAGV
Sbjct: 130 KSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGV 189

Query: 182 ASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKG 241
           ASRR+SEELIF G+VTVNG +CNTPQTRVDP+RDIIYVNGNR+PKKLPPKVY ALNKPKG
Sbjct: 190 ASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKG 249

Query: 242 YICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ 301
           YICSSG+KE KS ISLFD+YL SWDK  PG PKPRLFTVGRLDVATTGLI+VTNDGDFAQ
Sbjct: 250 YICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQ 309

Query: 302 SISHPSSGLSKEYIAAIDGAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLR 361
            +SHPSS L KEYI  + G + K++L+AISEGT+++GVHC PDSVEL+P+Q DI R RLR
Sbjct: 310 KLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLR 369

Query: 362 IVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IVVHEGRNHEVRELVK AGLE++SLKRVRIGGFRLPSDLGLG + ELKQS+LKA+GWK+
Sbjct: 370 IVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALGWKN 410

[Close]
BLAST of PI0011460 vs. ExPASy Swiss-Prot
Match: O67444 (Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain VF5) OX=224324 GN=aq_1464 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.7e-33
Identity = 94/255 (36.86%), Postives = 137/255 (53.73%), Query Frame = 0 

Query: 149 RLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPP 208
           R++K L+ AGVASRR +E+LI  GRV VNG V  +   +V+P  DI+ V+G   P K   
Sbjct: 5   RINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGK--PVKPQR 64

Query: 209 KVYLALNKPKGYICSSGKKES--KSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATT 268
           K Y+ LNKP  Y+   G+     K++  L  D               R+F VGRLD  T 
Sbjct: 65  KRYIILNKPCCYLTQLGRSPDGRKTIEELIKDI------------PERVFPVGRLDYNTE 124

Query: 269 GLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAVSKQNLIAISEGTIIDGVHCTPDSVEL 328
           GL+I+TNDG+ A  I HP   L K Y+A ++G V ++ L  + +G  ++     PD++ +
Sbjct: 125 GLLILTNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRI 184

Query: 329 LPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTEL 388
           +  + +     L I  HEGR H V+  + A G ++  LKR+ IG  +L   L  G + EL
Sbjct: 185 V--RYEGKNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKL-GKLSPGKWREL 242

Query: 389 KQSDL----KAIGWK 398
            Q +L    KA+G K
Sbjct: 245 NQGELAQLFKAVGLK 242

[Close]
BLAST of PI0011460 vs. ExPASy Swiss-Prot
Match: P35159 (Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 168) OX=224308 GN=rluB PE=1 SV=2)

HSP 1 Score: 133.7 bits (335), Expect = 4.7e-30
Identity = 84/247 (34.01%), Postives = 131/247 (53.04%), Query Frame = 0 

Query: 148 QRLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLP 207
           +RL KV+A AGVASRR +EELI  G+V VNG V      +V    D I VNG ++ ++ P
Sbjct: 2   ERLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKV-TGSDQIEVNGLKVEREEP 61

Query: 208 PKVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 267
             VY  L KP+G I ++   + + V++   D+ K+  +        R++ +GRLD  T+G
Sbjct: 62  --VYFLLYKPRGVISAAQDDKGRKVVT---DFFKNIPQ--------RIYPIGRLDYDTSG 121

Query: 268 LIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAVSKQNLIAISEGTIIDGVHCTPDSVELL 327
           L+++TNDG+FA  + HP   + K Y+A + G   K+ L  +  G  ++     P   +LL
Sbjct: 122 LLLLTNDGEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLL 181

Query: 328 PRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELK 387
                     +++ +HEGRN +VR + +A G E+  LKR       L   L  G   EL 
Sbjct: 182 SLDKKKQTSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNL-RGLHTGDARELT 233

Query: 388 QSDLKAI 395
             ++K +
Sbjct: 242 PHEVKRL 233

[Close]
BLAST of PI0011460 vs. ExPASy Swiss-Prot
Match: O05668 (Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strain TN) OX=272631 GN=ML1370 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.2e-28
Identity = 85/227 (37.44%), Postives = 122/227 (53.74%), Query Frame = 0 

Query: 149 RLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPP 208
           RL K+L+ AG+ASRR++E+LI  GRV V+G +     TRVDP   ++ V+G ++      
Sbjct: 17  RLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDPDVSVVRVDGVKVVVD-DS 76

Query: 209 KVYLALNKPKG-YICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTG 268
            VYLALNKP+G Y   S  +    V  L +  ++            +LF VGRLD  T G
Sbjct: 77  LVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRG---------NKKLFHVGRLDADTEG 136

Query: 269 LIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAVSKQNLIAISEGTIIDGVHCTPDSVELL 328
           LI++TNDG+ A  + HPS  +SK Y+A + GAV +     +S G  +D      D   ++
Sbjct: 137 LILLTNDGELAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVV 196

Query: 329 PRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRL 375
              P   +  +R+ +HEGR   VR L+ AAG  +  L R  IG   L
Sbjct: 197 DAIP--GKTLVRLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVSL 231

[Close]
BLAST of PI0011460 vs. ExPASy Swiss-Prot
Match: Q9HZ55 (Ribosomal large subunit pseudouridine synthase B OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=rluB PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.6e-28
Identity = 87/247 (35.22%), Postives = 128/247 (51.82%), Query Frame = 0 

Query: 148 QRLSKVLAAAGVASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLP 207
           ++L KVLA  GV SRR  E  I  GRV VNGSV +  Q RVD + D I V+G+ + ++  
Sbjct: 14  EKLQKVLARLGVGSRRDVEVWIAEGRVNVNGSVASLGQ-RVD-SHDAITVDGHLIRREEA 73

Query: 208 P---KVYLALNKPKGYICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVA 267
               +  L  NKP+G +C+    E +  I  FD          P     R   VGRLD+ 
Sbjct: 74  AESVRRVLIYNKPEGEVCTRDDPEGRPTI--FD--------RLPRLRTGRWINVGRLDIN 133

Query: 268 TTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAVSKQNLIAISEGTIIDGVHCTPDSV 327
           TTGL++ T DG+ A  + HPS  + +EY   + G V+++ +  +  G +++        +
Sbjct: 134 TTGLLLFTTDGELANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGVMLEDGPAKFSDI 193

Query: 328 ELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYT 387
           +  P     +      VV EGRN EVR L ++ GL +  LKRVR G   L S+L +G Y 
Sbjct: 194 QQAPGGEGFNH-WYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYR 247

Query: 388 ELKQSDL 392
           E+ Q ++
Sbjct: 254 EMDQREI 247

[Close]
BLAST of PI0011460 vs. ExPASy TrEMBL
Match: A0A1S3C3I9 (uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 751.9 bits (1940), Expect = 1.4e-213
Identity = 385/398 (96.73%), Postives = 388/398 (97.49%), Query Frame = 0 

Query: 1   MVSLAPSSLSFLSKPSLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA SSLSFLSKPSLIFN IRAIPRISCSLSSNSTPNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGETKPKKKKVS 120
           PKS+VED FQFIDRNTGGQLF+PWIVRGEDGNLKLQSHPPTRFLHSMSE ETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AVKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           A KPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IYSLKRVRIGG+RLPSDLGLGSYTELKQSDLKAIGWKS
Sbjct: 361 IYSLKRVRIGGYRLPSDLGLGSYTELKQSDLKAIGWKS 396

[Close]
BLAST of PI0011460 vs. ExPASy TrEMBL
Match: A0A1S4E166 (ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496448 PE=3 SV=1)

HSP 1 Score: 713.0 bits (1839), Expect = 7.0e-202
Identity = 366/379 (96.57%), Postives = 369/379 (97.36%), Query Frame = 0 

Query: 1   MVSLAPSSLSFLSKPSLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA SSLSFLSKPSLIFN IRAIPRISCSLSSNSTPNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGETKPKKKKVS 120
           PKS+VED FQFIDRNTGGQLF+PWIVRGEDGNLKLQSHPPTRFLHSMSE ETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AVKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           A KPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLG 380
           IYSLKRVRIGG+RLPSDLG
Sbjct: 361 IYSLKRVRIGGYRLPSDLG 377

[Close]
BLAST of PI0011460 vs. ExPASy TrEMBL
Match: A0A6J1GVH4 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457913 PE=3 SV=1)

HSP 1 Score: 712.2 bits (1837), Expect = 1.2e-201
Identity = 362/398 (90.95%), Postives = 374/398 (93.97%), Query Frame = 0 

Query: 1   MVSLAPSSLSFLSKPSLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA SSLS LSKPSLI NPIRAI RISCSLSSNS PN SSSSSSSLEFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSLEFNITFAPPTPK 60

Query: 61  PKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGETKPKKKKVS 120
           PKS+ +D FQFID+NTGGQLF+PWIVRGEDGNLKLQSHPPTRFLHSMSE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 AVKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
             K + EPPK+SKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAAIDGAV
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT+IDGVHC PD+VELLP+QPDI R RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IYSLKRVRIGGFRLPSDLGLGSY ELKQSDLKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQSDLKAIGWKS 398

[Close]
BLAST of PI0011460 vs. ExPASy TrEMBL
Match: A0A6J1JT41 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111487252 PE=3 SV=1)

HSP 1 Score: 709.5 bits (1830), Expect = 7.7e-201
Identity = 360/398 (90.45%), Postives = 373/398 (93.72%), Query Frame = 0 

Query: 1   MVSLAPSSLSFLSKPSLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA SSLS LSKPSLI NPIRAI RISCSLSSNS PN SSSSSSS+EFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSMEFNITFAPPTPK 60

Query: 61  PKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGETKPKKKKVS 120
           PKS+ +D FQFID+NTGGQLF+PWIVRGEDGNLKLQSHPPTRFLHSMSE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 AVKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
             K + EPPK+SKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAAIDGAV
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT+IDGVHC PD+VELLP+QPDI R RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IYSLKRVRIGGFRLPSDLGLGSY ELKQ DLKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQCDLKAIGWKS 398

[Close]
BLAST of PI0011460 vs. ExPASy TrEMBL
Match: A0A6J1BVE6 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006060 PE=3 SV=1)

HSP 1 Score: 709.5 bits (1830), Expect = 7.7e-201
Identity = 367/401 (91.52%), Postives = 377/401 (94.01%), Query Frame = 0 

Query: 1   MVSLAP--SSLSFLSKPSLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPK 60
           M SLA   SSLS LSKPS I NPIRAIPRISCSLSSNS PNA  SSSS LEFNITFAPPK
Sbjct: 1   MASLAAALSSLSILSKPSFILNPIRAIPRISCSLSSNSAPNA--SSSSPLEFNITFAPPK 60

Query: 61  PKPKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGETKPKKKK 120
           PKPKSE++  FQFID NTGGQL +PWIVRGEDGNL+LQSHPPTRFL SMSE ETKP++KK
Sbjct: 61  PKPKSEIQHPFQFIDPNTGGQLLIPWIVRGEDGNLQLQSHPPTRFLQSMSEAETKPRRKK 120

Query: 121 VSAVKPITE-PPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVN 180
            SA K + E PPKHSKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVN
Sbjct: 121 GSADKRVPEPPPKHSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVN 180

Query: 181 GSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240
           GSVCNTPQTRVDPARD+IYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD
Sbjct: 181 GSVCNTPQTRVDPARDVIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFD 240

Query: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300
           DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID
Sbjct: 241 DYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAID 300

Query: 301 GAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAA 360
           GAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPD+SR RLRIVVHEGRNHEVRELVKAA
Sbjct: 301 GAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDVSRSRLRIVVHEGRNHEVRELVKAA 360

Query: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS
Sbjct: 361 GLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399

[Close]
BLAST of PI0011460 vs. NCBI nr
Match: XP_004140075.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucumis sativus] >KGN48104.2 hypothetical protein Csa_003766 [Cucumis sativus])

HSP 1 Score: 751.9 bits (1940), Expect = 2.8e-213
Identity = 383/398 (96.23%), Postives = 388/398 (97.49%), Query Frame = 0 

Query: 1   MVSLAPSSLSFLSKPSLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA SSL  LSKPSLIFNPIRAIPRISCSLSSNS PNASSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLLLLSKPSLIFNPIRAIPRISCSLSSNSKPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGETKPKKKKVS 120
           PKSEVED FQFIDRN+GGQLF+PWIVRGEDGNLKLQSHPPTRFLHS+SE ETKPKKKKVS
Sbjct: 61  PKSEVEDPFQFIDRNSGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSVSEDETKPKKKKVS 120

Query: 121 AVKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           A KPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ ISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQGISHPSSGLSKEYIAAIDGTV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDIS+ RLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISKSRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IYSLKRVRIGGFRLPSDLGLGSYTELKQS+LKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSELKAIGWKS 398

[Close]
BLAST of PI0011460 vs. NCBI nr
Match: XP_008456519.1 (PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumis melo])

HSP 1 Score: 751.9 bits (1940), Expect = 2.8e-213
Identity = 385/398 (96.73%), Postives = 388/398 (97.49%), Query Frame = 0 

Query: 1   MVSLAPSSLSFLSKPSLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA SSLSFLSKPSLIFN IRAIPRISCSLSSNSTPNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGETKPKKKKVS 120
           PKS+VED FQFIDRNTGGQLF+PWIVRGEDGNLKLQSHPPTRFLHSMSE ETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AVKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           A KPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IYSLKRVRIGG+RLPSDLGLGSYTELKQSDLKAIGWKS
Sbjct: 361 IYSLKRVRIGGYRLPSDLGLGSYTELKQSDLKAIGWKS 396

[Close]
BLAST of PI0011460 vs. NCBI nr
Match: XP_038884576.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Benincasa hispida])

HSP 1 Score: 748.0 bits (1930), Expect = 4.1e-212
Identity = 381/398 (95.73%), Postives = 387/398 (97.24%), Query Frame = 0 

Query: 1   MVSLAPSSLSFLSKPSLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA SSLSFLSKPS I NPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSFILNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60

Query: 61  PKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGETKPKKKKVS 120
           PKSEVE  FQFIDRNTGGQLF+PWIVRGEDGNLKLQSHPPTRFLHSMSE ETKPKKKKVS
Sbjct: 61  PKSEVEGPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AVKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           A K  TEPPKHSKAARRFYNENIR++SQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 ADKRPTEPPKHSKAARRFYNENIRDASQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARD+IYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDVIYVNGNRLPKKLPQKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLI+VTNDGDFAQSISHPSSGLSKEYIAAIDGAV
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLILVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGTIIDG+HCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTIIDGIHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 398

[Close]
BLAST of PI0011460 vs. NCBI nr
Match: XP_016901969.1 (PREDICTED: ribosomal large subunit pseudouridine synthase B isoform X2 [Cucumis melo])

HSP 1 Score: 713.0 bits (1839), Expect = 1.4e-201
Identity = 366/379 (96.57%), Postives = 369/379 (97.36%), Query Frame = 0 

Query: 1   MVSLAPSSLSFLSKPSLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA SSLSFLSKPSLIFN IRAIPRISCSLSSNSTPNA  SSSSS EFNITFAPPKPK
Sbjct: 1   MVSLASSSLSFLSKPSLIFNRIRAIPRISCSLSSNSTPNA--SSSSSFEFNITFAPPKPK 60

Query: 61  PKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGETKPKKKKVS 120
           PKS+VED FQFIDRNTGGQLF+PWIVRGEDGNLKLQSHPPTRFLHSMSE ETKPKKKKVS
Sbjct: 61  PKSDVEDPFQFIDRNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEDETKPKKKKVS 120

Query: 121 AVKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
           A KPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV
Sbjct: 121 AGKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300
           KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDG V
Sbjct: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGDV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLIAISEGT IDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLIAISEGTTIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLG 380
           IYSLKRVRIGG+RLPSDLG
Sbjct: 361 IYSLKRVRIGGYRLPSDLG 377

[Close]
BLAST of PI0011460 vs. NCBI nr
Match: XP_022956132.1 (putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucurbita moschata] >XP_023515775.1 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cucurbita pepo subsp. pepo] >KAG6602297.1 putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 712.2 bits (1837), Expect = 2.5e-201
Identity = 362/398 (90.95%), Postives = 374/398 (93.97%), Query Frame = 0 

Query: 1   MVSLAPSSLSFLSKPSLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 60
           MVSLA SSLS LSKPSLI NPIRAI RISCSLSSNS PN SSSSSSSLEFNITFAPP PK
Sbjct: 1   MVSLAASSLSVLSKPSLILNPIRAISRISCSLSSNSAPNGSSSSSSSLEFNITFAPPTPK 60

Query: 61  PKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGETKPKKKKVS 120
           PKS+ +D FQFID+NTGGQLF+PWIVRGEDGNLKLQSHPPTRFLHSMSE E KPKKKKVS
Sbjct: 61  PKSKTDDSFQFIDQNTGGQLFIPWIVRGEDGNLKLQSHPPTRFLHSMSEAEAKPKKKKVS 120

Query: 121 AVKPITEPPKHSKAARRFYNENIRESSQRLSKVLAAAGVASRRSSEELIFGGRVTVNGSV 180
             K + EPPK+SKAARRFYNENIR+SSQRLSKVLAAAGVASRRSSEELIF GRVTVNGSV
Sbjct: 121 VDKRVPEPPKYSKAARRFYNENIRDSSQRLSKVLAAAGVASRRSSEELIFEGRVTVNGSV 180

Query: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKGYICSSGKKESKSVISLFDDYL 240
           CNTPQTRVDPARDIIYVNGNRLPKKLP KVYLALNKPKGYICSSGKKESKSVI+LFDDYL
Sbjct: 181 CNTPQTRVDPARDIIYVNGNRLPKKLPSKVYLALNKPKGYICSSGKKESKSVINLFDDYL 240

Query: 241 KSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGLSKEYIAAIDGAV 300
           KSW KTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSG+SKEYIAAIDGAV
Sbjct: 241 KSWHKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQSISHPSSGISKEYIAAIDGAV 300

Query: 301 SKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLE 360
           SKQNLI ISEGT+IDGVHC PD+VELLP+QPDI R RLRI VHEGRNHEVRELVKAAGLE
Sbjct: 301 SKQNLITISEGTVIDGVHCIPDAVELLPQQPDIPRSRLRITVHEGRNHEVRELVKAAGLE 360

Query: 361 IYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IYSLKRVRIGGFRLPSDLGLGSY ELKQSDLKAIGWKS
Sbjct: 361 IYSLKRVRIGGFRLPSDLGLGSYIELKQSDLKAIGWKS 398

[Close]
BLAST of PI0011460 vs. TAIR 10
Match: AT2G39140.1 (pseudouridine synthase family protein )

HSP 1 Score: 503.8 bits (1296), Expect = 1.2e-142
Identity = 273/419 (65.16%), Postives = 313/419 (74.70%), Query Frame = 0 

Query: 2   VSLAPSSLSFLSKP-SLIFNPIRAIPRISCSLSSNSTPNASSSSSSSLEFNITFAPPKPK 61
           +S A S L   + P S  F PIR    + CS+        SSSSS  +EF+I+FAPPKPK
Sbjct: 10  ISFAASFLKIKAFPLSPRFFPIRT---LRCSV--------SSSSSEPIEFDISFAPPKPK 69

Query: 62  PKSEVEDQFQFIDRNTGGQLFVPWIVRGEDGNLKLQSHPPTRFLHSMSEGET--KPKKK- 121
           P S            T  QLF+PWIVR +DG LKLQS PP R +H+++   T   PKKK 
Sbjct: 70  PSSTHGGV-------TPQQLFIPWIVRSDDGTLKLQSQPPARLIHNLAIDATTQNPKKKD 129

Query: 122 -----------KVSAVKPITEP-------PKHSKAARRFYNENIRESSQRLSKVLAAAGV 181
                        SA    + P       PK SKAARRFYNEN +E  QRLSKVLAAAGV
Sbjct: 130 KSKKKQPQATSSSSATTTASSPASHSEVKPKLSKAARRFYNENFKEQPQRLSKVLAAAGV 189

Query: 182 ASRRSSEELIFGGRVTVNGSVCNTPQTRVDPARDIIYVNGNRLPKKLPPKVYLALNKPKG 241
           ASRR+SEELIF G+VTVNG +CNTPQTRVDP+RDIIYVNGNR+PKKLPPKVY ALNKPKG
Sbjct: 190 ASRRTSEELIFDGKVTVNGILCNTPQTRVDPSRDIIYVNGNRIPKKLPPKVYFALNKPKG 249

Query: 242 YICSSGKKESKSVISLFDDYLKSWDKTYPGQPKPRLFTVGRLDVATTGLIIVTNDGDFAQ 301
           YICSSG+KE KS ISLFD+YL SWDK  PG PKPRLFTVGRLDVATTGLI+VTNDGDFAQ
Sbjct: 250 YICSSGEKEIKSAISLFDEYLSSWDKRNPGTPKPRLFTVGRLDVATTGLIVVTNDGDFAQ 309

Query: 302 SISHPSSGLSKEYIAAIDGAVSKQNLIAISEGTIIDGVHCTPDSVELLPRQPDISRPRLR 361
            +SHPSS L KEYI  + G + K++L+AISEGT+++GVHC PDSVEL+P+Q DI R RLR
Sbjct: 310 KLSHPSSSLPKEYITTVVGDIHKRHLMAISEGTMVEGVHCVPDSVELMPKQHDIPRARLR 369

Query: 362 IVVHEGRNHEVRELVKAAGLEIYSLKRVRIGGFRLPSDLGLGSYTELKQSDLKAIGWKS 399
           IVVHEGRNHEVRELVK AGLE++SLKRVRIGGFRLPSDLGLG + ELKQS+LKA+GWK+
Sbjct: 370 IVVHEGRNHEVRELVKNAGLEVHSLKRVRIGGFRLPSDLGLGKHVELKQSELKALGWKN 410

[Close]
BLAST of PI0011460 vs. TAIR 10
Match: AT3G43340.1 (Pseudouridine synthase family protein )

HSP 1 Score: 117.5 bits (293), Expect = 2.5e-26
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = 0 

Query: 306 IAISEGTIIDGVHCTPDSVELLPRQPDISRPRLRIVVHEGRNHEVRELVKAAGLEIYSLK 365
           +AISEGT+++G+HC PD VEL+P+Q DI R  LRIVVHEGRNHEVRELVK  GLE+ SLK
Sbjct: 1   MAISEGTMVEGIHCVPDLVELMPKQHDIPRAWLRIVVHEGRNHEVRELVKNVGLEVDSLK 60

Query: 366 RVRIGGFRLPSDLG 380
           RVRIGG RLPSDLG
Sbjct: 61  RVRIGGVRLPSDLG 74

The following BLAST results are available for this feature:
BLAST of PI0011460 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8L9601.7e-14165.16Putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=A... [more]
O674442.7e-3336.86Uncharacterized RNA pseudouridine synthase aq_1464 OS=Aquifex aeolicus (strain V... [more]
P351594.7e-3034.01Ribosomal large subunit pseudouridine synthase B OS=Bacillus subtilis (strain 16... [more]
O056681.2e-2837.44Uncharacterized RNA pseudouridine synthase ML1370 OS=Mycobacterium leprae (strai... [more]
Q9HZ552.6e-2835.22Ribosomal large subunit pseudouridine synthase B OS=Pseudomonas aeruginosa (stra... [more]
BLAST of PI0011460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3C3I91.4e-21396.73uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 OS=Cucumis melo OX... [more]
A0A1S4E1667.0e-20296.57ribosomal large subunit pseudouridine synthase B isoform X2 OS=Cucumis melo OX=3... [more]
A0A6J1GVH41.2e-20190.95putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C... [more]
A0A6J1JT417.7e-20190.45putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=C... [more]
A0A6J1BVE67.7e-20191.52putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic OS=M... [more]
BLAST of PI0011460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004140075.12.8e-21396.23putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cuc... [more]
XP_008456519.12.8e-21396.73PREDICTED: uncharacterized RNA pseudouridine synthase aq_1464 isoform X1 [Cucumi... [more]
XP_038884576.14.1e-21295.73putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Ben... [more]
XP_016901969.11.4e-20196.57PREDICTED: ribosomal large subunit pseudouridine synthase B isoform X2 [Cucumis ... [more]
XP_022956132.12.5e-20190.95putative ribosomal large subunit pseudouridine synthase SVR1, chloroplastic [Cuc... [more]
BLAST of PI0011460 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G39140.11.2e-14265.16pseudouridine synthase family protein [more]
AT3G43340.12.5e-2675.68Pseudouridine synthase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 148..207
e-value: 8.3E-14
score: 61.9
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 148..190
e-value: 5.9E-11
score: 41.9
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 148..215
e-value: 1.66778E-10
score: 54.563
IPR020094Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminalGENE3D3.30.70.580coord: 211..390
e-value: 2.8E-46
score: 159.1
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 144..204
e-value: 4.6E-18
score: 66.2
IPR042092Pseudouridine synthase, RsuA/RluB/E/F, catalytic domainGENE3D3.30.70.1560coord: 288..373
e-value: 2.8E-46
score: 159.1
IPR006145Pseudouridine synthase, RsuA/RluA-likePFAMPF00849PseudoU_synth_2coord: 211..352
e-value: 1.5E-15
score: 57.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 103..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 108..132
NoneNo IPR availablePANTHERPTHR47683PSEUDOURIDINE SYNTHASE FAMILY PROTEIN-RELATEDcoord: 39..397
NoneNo IPR availablePROSITEPS50889S4coord: 148..217
score: 14.281917
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 137..230
IPR018496Pseudouridine synthase, RsuA/RluB/E/F, conserved sitePROSITEPS01149PSI_RSUcoord: 259..273
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 210..390

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0011460.1PI0011460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000488 maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process GO:0000489 maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
biological_process GO:0032544 plastid translation
biological_process GO:0001522 pseudouridine synthesis
biological_process GO:0009451 RNA modification
cellular_component GO:0009507 chloroplast
molecular_function GO:0009982 pseudouridine synthase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016866 intramolecular transferase activity