PI0011408 (gene) Melon (PI 482460) v1

Overview


Name	PI0011408
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr01: 27385548 .. 27386386 (+)
RNA-Seq Expression	PI0011408
Synteny	PI0011408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTACCATTGATGGAGCATCCTCCTCACAAGGAAGAACTACTCAAACAAATAAATCCTGACTTTGAAAAATGGGTCACCACGGATTTACTTCTTCTCGGCTGGCTGTATAACTCCATGAATCCTGAAGTAGCTGTGCAACTTATGGGATTTAACAATGCAAAAGACCTGTGGGAAGCAACACAGGATCTGTTTGGAGTTCAATCAAGAGCCGAAGAAGATTTCCTACGCCAGATGTTTCAAACTACTCGGAAAGGTAGTATGAAGATGGAAGAATATCTAAAAACCATGAAGACTTATGCTGATAGTCTCAGTCAAACAGACAATAATGTATCCACAAGATCTCTGGTTTCACAAACTCTCTTAGGCCTCGATGAAACGTACAATCCGGTTATTGCTGTCATTCAAGGTAAGTCTGATATATCCTGGATTGATATGCAATCTGAACTTCTTACATTTGACAAACGGTTGGAGCATCAGAATTCTCAAAGGAACACTGGGAATATCGGAGGCAATATCACGGCAAATTTTGCTCAAAACAGAGGAGTCTCTGATCCTCGACTTCCTAACTCTCAATACCAGAATAATGCTCGACCATCATTCACTGGACAAAGAGGCAGTGGTCAGAACTCAAACAATAGAGGCCGTGGAAATAAACCAACCTGTCAAATTTGTGGTAAGTATGGGCACTCTGCTGCTGCTTGTTACAATAGGTTTAATAAAGAATTCACAGGGAACTTCAACCCAATCAAGCCTGGACAGAATTTCAATATTCCTACTAATCAGTCTTCTCAAAGCTCTCCAAATCCCACTGCATTTGTCACTGGTCAGACCTCTAA

mRNA sequence

ATGCTACCATTGATGGAGCATCCTCCTCACAAGGAAGAACTACTCAAACAAATAAATCCTGACTTTGAAAAATGGGTCACCACGGATTTACTTCTTCTCGGCTGGCTGTATAACTCCATGAATCCTGAAGTAGCTGTGCAACTTATGGGATTTAACAATGCAAAAGACCTGTGGGAAGCAACACAGGATCTGTTTGGAGTTCAATCAAGAGCCGAAGAAGATTTCCTACGCCAGATGTTTCAAACTACTCGGAAAGGTAGTATGAAGATGGAAGAATATCTAAAAACCATGAAGACTTATGCTGATAGTCTCAGTCAAACAGACAATAATGTATCCACAAGATCTCTGGTTTCACAAACTCTCTTAGGCCTCGATGAAACGTACAATCCGGTTATTGCTGTCATTCAAGGTAAGTCTGATATATCCTGGATTGATATGCAATCTGAACTTCTTACATTTGACAAACGGTTGGAGCATCAGAATTCTCAAAGGAACACTGGGAATATCGGAGGCAATATCACGGCAAATTTTGCTCAAAACAGAGGAGTCTCTGATCCTCGACTTCCTAACTCTCAATACCAGAATAATGCTCGACCATCATTCACTGGACAAAGAGGCAGTGGTCAGAACTCAAACAATAGAGGCCGTGGAAATAAACCAACCTGTCAAATTTGTGTCTTCTCAAAGCTCTCCAAATCCCACTGCATTTGTCACTGGTCAGACCTCTAA

Coding sequence (CDS)

ATGCTACCATTGATGGAGCATCCTCCTCACAAGGAAGAACTACTCAAACAAATAAATCCTGACTTTGAAAAATGGGTCACCACGGATTTACTTCTTCTCGGCTGGCTGTATAACTCCATGAATCCTGAAGTAGCTGTGCAACTTATGGGATTTAACAATGCAAAAGACCTGTGGGAAGCAACACAGGATCTGTTTGGAGTTCAATCAAGAGCCGAAGAAGATTTCCTACGCCAGATGTTTCAAACTACTCGGAAAGGTAGTATGAAGATGGAAGAATATCTAAAAACCATGAAGACTTATGCTGATAGTCTCAGTCAAACAGACAATAATGTATCCACAAGATCTCTGGTTTCACAAACTCTCTTAGGCCTCGATGAAACGTACAATCCGGTTATTGCTGTCATTCAAGGTAAGTCTGATATATCCTGGATTGATATGCAATCTGAACTTCTTACATTTGACAAACGGTTGGAGCATCAGAATTCTCAAAGGAACACTGGGAATATCGGAGGCAATATCACGGCAAATTTTGCTCAAAACAGAGGAGTCTCTGATCCTCGACTTCCTAACTCTCAATACCAGAATAATGCTCGACCATCATTCACTGGACAAAGAGGCAGTGGTCAGAACTCAAACAATAGAGGCCGTGGAAATAAACCAACCTGTCAAATTTGTGTCTTCTCAAAGCTCTCCAAATCCCACTGCATTTGTCACTGGTCAGACCTCTAA

Protein sequence

MLPLMEHPPHKEELLKQINPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPRLPNSQYQNNARPSFTGQRGSGQNSNNRGRGNKPTCQICVFSKLSKSHCICHWSDL

Homology

[Close]

BLAST of PI0011408 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 2.2e-57
Identity = 128/225 (56.89%), Postives = 155/225 (68.89%), Query Frame = 0


Query: 18  INPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLR 77
           +N  FE+WVTTDLLLLGWLYNSM P+VA+QLMGF N +DLW+ATQD FGVQSRAEEDFLR
Sbjct: 101 VNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

Query: 78  QMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQG 137
           QM QTTRKG+ KMEEYL  MKT  D+L Q  + V  R+L+SQ LLGLDE YN VI VIQG
Sbjct: 161 QMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQG 220

Query: 138 KSDISWIDMQSELLTFDKRLEHQNSQ---RNTGNIGGNITANFAQNRGVSDPR-LPNSQY 197
           K DISW+DMQS+LL F+K L+HQN+Q   +  GNI  +   N AQ   ++  R   N ++
Sbjct: 221 KPDISWLDMQSKLLIFEKILKHQNTQKKKKKKGNITQSPALNMAQRFALNGQRNHSNKKF 280

Query: 198 QNNARPSFTGQRGSGQNSNNRGRGNKPTCQICVFSKLSKSHCICH 239
               R  F+GQRG+          N PTCQ+C   K   S  +C+
Sbjct: 281 YGYNRQHFSGQRGN--------LNNGPTCQLC--GKYGHSALVCY 315

[Close]

BLAST of PI0011408 vs. ExPASy TrEMBL
Match: A0A0A0LXB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 8.4e-57
Identity = 120/191 (62.83%), Postives = 145/191 (75.92%), Query Frame = 0


Query: 36  LYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLK 95
           LYNS+ PEV VQL+GF NAKD+WEAT D FGV+SRAEEDFLRQ FQTTRKG+  ME+YL+
Sbjct: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81

Query: 96  TMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDK 155
            MKT AD+L Q ++ +  R+L+SQ LLGLDE YNPVI VIQGK +ISW+DMQS+LL F+K
Sbjct: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141

Query: 156 RLEHQNSQRNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSN-- 215
           RL+HQNSQ+N GNI  N T N AQ+R  ++PR   N Q+  N R +F G RG   NS   
Sbjct: 142 RLKHQNSQKNIGNIVQNATINMAQSRNNNEPRGSENHQFHGNNRNNFQGHRGGSNNSRGC 201

Query: 216 NRGRGNKPTCQ 224
            RGRG+K TCQ
Sbjct: 202 GRGRGSKSTCQ 212

[Close]

BLAST of PI0011408 vs. ExPASy TrEMBL
Match: A0A5D3C373 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002430 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 6.6e-54
Identity = 123/198 (62.12%), Postives = 143/198 (72.22%), Query Frame = 0


Query: 44  VAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADS 103
           +A+QLMGF NAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRK     E+YL+ MKT +D 
Sbjct: 45  IAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKVRASYEDYLRIMKTNSDK 104

Query: 104 LSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQ 163
           L Q  + V  R+ +SQ LLGLDE YNPVIAVIQGK +ISWIDMQSELLTF+KRLEHQ++Q
Sbjct: 105 LGQAGSPVPKRAFISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQDTQ 164

Query: 164 RNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQ--NSNNRGRGNKP 223
           +NT NI  N+  N AQNR  SD R   N Q+  N R +  GQRG         +GRGNKP
Sbjct: 165 KNTENIIQNV-VNIAQNRNSSDFRKYSNHQFHGNNRNNSQGQRGGFNIGRGRGKGRGNKP 224

Query: 224 TCQICVFSKLSKSHCICH 239
           TCQ+C   K   S  +C+
Sbjct: 225 TCQVC--EKYGHSALVCY 239

[Close]

BLAST of PI0011408 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 8.7e-46
Identity = 95/143 (66.43%), Postives = 116/143 (81.12%), Query Frame = 0


Query: 16  KQINPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDF 75
           K +NP +E+WVT+D+LLLG +YNSM P+VA+QLMGFN AKDLWEA Q+LFG++SRAEE F
Sbjct: 63  KIVNPKYEQWVTSDMLLLGLIYNSMVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYF 122

Query: 76  LRQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVI 135
           LR  FQTTR+G+ KME+YL+ MK  AD+L Q  + V  R L+SQ LLGLDE YNPV AVI
Sbjct: 123 LRHTFQTTREGNYKMEDYLRIMKINADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVI 182

Query: 136 QGKSDISWIDMQSELLTFDKRLE 159
           QGK DISW+DMQSELL F+  +E
Sbjct: 183 QGKPDISWLDMQSELLIFENLVE 205

[Close]

BLAST of PI0011408 vs. ExPASy TrEMBL
Match: A0A1S4E1U6 (uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC107991581 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 1.9e-45
Identity = 112/223 (50.22%), Postives = 134/223 (60.09%), Query Frame = 0


Query: 18  INPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLR 77
           +NP FE+WVTTDLLLLGWLYNSM P+VA+QLMGF N +DLW+ATQD FGVQSRAEEDFLR
Sbjct: 101 VNPLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

Query: 78  QMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQG 137
           QM QTTRK                                     GLDE YN VI VIQG
Sbjct: 161 QMLQTTRK-------------------------------------GLDEVYNLVIVVIQG 220

Query: 138 KSDISWIDMQSELLTFDKRLEHQNSQ-RNTGNIGGNITANFAQNRGVSDPR-LPNSQYQN 197
           K DISW+DMQS+LL F+KRL+HQN+Q +NTGNI  +   N AQ   ++  R   N ++  
Sbjct: 221 KPDISWLDMQSKLLIFEKRLKHQNTQKKNTGNITQSPALNMAQRFALNGQRNQSNKKFYG 276

Query: 198 NARPSFTGQRGSGQNSNNRGRGNKPTCQICVFSKLSKSHCICH 239
             R  F+GQRG+          N PTCQ+C   K   S  +C+
Sbjct: 281 YNRQHFSGQRGN--------LNNGPTCQLC--GKYGHSALVCY 276

[Close]

BLAST of PI0011408 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 232.3 bits (591), Expect = 4.5e-57
Identity = 128/225 (56.89%), Postives = 155/225 (68.89%), Query Frame = 0


Query: 18  INPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLR 77
           +N  FE+WVTTDLLLLGWLYNSM P+VA+QLMGF N +DLW+ATQD FGVQSRAEEDFLR
Sbjct: 101 VNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

Query: 78  QMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQG 137
           QM QTTRKG+ KMEEYL  MKT  D+L Q  + V  R+L+SQ LLGLDE YN VI VIQG
Sbjct: 161 QMLQTTRKGNTKMEEYLLVMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQG 220

Query: 138 KSDISWIDMQSELLTFDKRLEHQNSQ---RNTGNIGGNITANFAQNRGVSDPR-LPNSQY 197
           K DISW+DMQS+LL F+K L+HQN+Q   +  GNI  +   N AQ   ++  R   N ++
Sbjct: 221 KPDISWLDMQSKLLIFEKILKHQNTQKKKKKKGNITQSPALNMAQRFALNGQRNHSNKKF 280

Query: 198 QNNARPSFTGQRGSGQNSNNRGRGNKPTCQICVFSKLSKSHCICH 239
               R  F+GQRG+          N PTCQ+C   K   S  +C+
Sbjct: 281 YGYNRQHFSGQRGN--------LNNGPTCQLC--GKYGHSALVCY 315

[Close]

BLAST of PI0011408 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_019689 [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 1.7e-56
Identity = 120/191 (62.83%), Postives = 145/191 (75.92%), Query Frame = 0


Query: 36  LYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLK 95
           LYNS+ PEV VQL+GF NAKD+WEAT D FGV+SRAEEDFLRQ FQTTRKG+  ME+YL+
Sbjct: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81

Query: 96  TMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDK 155
            MKT AD+L Q ++ +  R+L+SQ LLGLDE YNPVI VIQGK +ISW+DMQS+LL F+K
Sbjct: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141

Query: 156 RLEHQNSQRNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQNSN-- 215
           RL+HQNSQ+N GNI  N T N AQ+R  ++PR   N Q+  N R +F G RG   NS   
Sbjct: 142 RLKHQNSQKNIGNIVQNATINMAQSRNNNEPRGSENHQFHGNNRNNFQGHRGGSNNSRGC 201

Query: 216 NRGRGNKPTCQ 224
            RGRG+K TCQ
Sbjct: 202 GRGRGSKSTCQ 212

[Close]

BLAST of PI0011408 vs. NCBI nr
Match: TYK05754.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-53
Identity = 123/198 (62.12%), Postives = 143/198 (72.22%), Query Frame = 0


Query: 44  VAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKGSMKMEEYLKTMKTYADS 103
           +A+QLMGF NAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRK     E+YL+ MKT +D 
Sbjct: 45  IAIQLMGFTNAKDLWEATQDLFGVQSRAEEDFLRQMFQTTRKVRASYEDYLRIMKTNSDK 104

Query: 104 LSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQGKSDISWIDMQSELLTFDKRLEHQNSQ 163
           L Q  + V  R+ +SQ LLGLDE YNPVIAVIQGK +ISWIDMQSELLTF+KRLEHQ++Q
Sbjct: 105 LGQAGSPVPKRAFISQALLGLDEVYNPVIAVIQGKPEISWIDMQSELLTFEKRLEHQDTQ 164

Query: 164 RNTGNIGGNITANFAQNRGVSDPR-LPNSQYQNNARPSFTGQRGSGQ--NSNNRGRGNKP 223
           +NT NI  N+  N AQNR  SD R   N Q+  N R +  GQRG         +GRGNKP
Sbjct: 165 KNTENIIQNV-VNIAQNRNSSDFRKYSNHQFHGNNRNNSQGQRGGFNIGRGRGKGRGNKP 224

Query: 224 TCQICVFSKLSKSHCICH 239
           TCQ+C   K   S  +C+
Sbjct: 225 TCQVC--EKYGHSALVCY 239

[Close]

BLAST of PI0011408 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-52
Identity = 113/214 (52.80%), Postives = 146/214 (68.22%), Query Frame = 0


Query: 17  QINPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFL 76
           ++NP +E W+  D LLLGWLYNSM PEVA+Q+MG   AKDLW +   LFGVQSR EED+L
Sbjct: 41  EVNPQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWTSIPQLFGVQSRVEEDYL 100

Query: 77  RQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQ 136
           R +FQTTRKG++KMEEYL+TMK   D+L Q  + +  R+LVSQ LLGLDE YN ++A+IQ
Sbjct: 101 RHVFQTTRKGNLKMEEYLQTMKMNTDNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQ 160

Query: 137 GKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIG--GNITANFAQNRGVSDPRLPNSQYQ 196
           G+ D+SW+DMQSELL +++RLEHQ++Q+ T       N + N    R V+     NS  Q
Sbjct: 161 GRVDMSWLDMQSELLLYERRLEHQSNQKTTVGFNQISNASVNMTNTRHVNQNNKTNSSNQ 220

Query: 197 NNARPSFTGQRGSGQNSNNRGRG---NKPTCQIC 226
           +       GQRG G +   RGRG    KP CQ+C
Sbjct: 221 SIG----GGQRGGGGHGRGRGRGRNNKKPVCQVC 250

[Close]

BLAST of PI0011408 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 217.6 bits (553), Expect = 1.2e-52
Identity = 113/214 (52.80%), Postives = 146/214 (68.22%), Query Frame = 0


Query: 17  QINPDFEKWVTTDLLLLGWLYNSMNPEVAVQLMGFNNAKDLWEATQDLFGVQSRAEEDFL 76
           ++NP +E W+  D LLLGWLYNSM PEVA+Q+MG   AKDLW +   LFGVQSR EED+L
Sbjct: 41  EVNPQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWTSIPQLFGVQSRVEEDYL 100

Query: 77  RQMFQTTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQ 136
           R +FQTTRKG++KMEEYL+TMK   D+L Q  + +  R+LVSQ LLGLDE YN ++A+IQ
Sbjct: 101 RHVFQTTRKGNLKMEEYLQTMKMNTDNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQ 160

Query: 137 GKSDISWIDMQSELLTFDKRLEHQNSQRNTGNIG--GNITANFAQNRGVSDPRLPNSQYQ 196
           G+ D+SW+DMQSELL +++RLEHQ++Q+ T       N + N    R V+     NS  Q
Sbjct: 161 GRVDMSWLDMQSELLLYERRLEHQSNQKTTVGFNQISNASVNMTNTRHVNQNNKTNSSNQ 220

Query: 197 NNARPSFTGQRGSGQNSNNRGRG---NKPTCQIC 226
           +       GQRG G +   RGRG    KP CQ+C
Sbjct: 221 SIG----GGQRGGGGHGRGRGRGRNNKKPVCQVC 250

[Close]

BLAST of PI0011408 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 58.5 bits (140), Expect = 8.4e-09
Identity = 55/209 (26.32%), Postives = 96/209 (45.93%), Query Frame = 0


Query: 23  EKWVTTDLLLLGWLYNSMNPEVAVQLMGFN-NAKDLWEATQDLFGVQSRAEEDFLRQMFQ 82
           ++W   D L+  W+Y ++   +   ++     A+DLW + ++LF     A         +
Sbjct: 65  KRWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFENELR 124

Query: 83  TTRKGSMKMEEYLKTMKTYADSLSQTDNNVSTRSLVSQTLLGLDETYNPVIAVIQGKSDI 142
           TT    + + EY + +K+ +D L+  D+ +S R LV   L GL E Y+ ++ VI+ KS  
Sbjct: 125 TTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHKSPF 184

Query: 143 -SWIDMQSELLTFDKRLEHQNSQRNTGNIGGNITANFAQNRGVSDPRLPNSQYQNNAR-- 202
            S+ + +S LL  + RL ++ S+ +  +      +N          R P   + NN+   
Sbjct: 185 PSFTEARSMLLMEESRLSNK-SKSSLSHTNHPSLSNVLFTVPRQQERYPQEYHNNNSNMG 244

Query: 203 --PSFTGQRGSGQ-----NSNNRGRGNKP 221
              S    RG G      N+NN  R N+P
Sbjct: 245 RGRSKKKNRGGGSSDGRYNNNNNWRLNQP 272

The following BLAST results are available for this feature:

BLAST of PI0011408 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011408 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SIT7	2.2e-57	56.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LXB7	8.4e-57	62.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1	[more]
A0A5D3C373	6.6e-54	62.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3E3L7	8.7e-46	66.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4E1U6	1.9e-45	50.22	uncharacterized protein LOC107991581 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of PI0011408 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026100.1	4.5e-57	56.89	uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]	[more]
KGN65684.1	1.7e-56	62.83	hypothetical protein Csa_019689 [Cucumis sativus]	[more]
TYK05754.1	1.4e-53	62.12	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
XP_038905164.1	1.2e-52	52.80	uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]	[more]
XP_038905161.1	1.2e-52	52.80	uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]	[more]

BLAST of PI0011408 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	8.4e-09	26.32	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 25..158 e-value: 2.0E-12 score: 47.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..216
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 16..237
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 16..237

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011408.1	PI0011408.1	mRNA