PI0011363 (gene) Melon (PI 482460) v1

Overview
NamePI0011363
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description30S ribosomal protein S12, chloroplastic
Locationtig00000638: 9618 .. 10049 (-)
RNA-Seq ExpressionPI0011363
SyntenyPI0011363
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

mRNA sequence

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCACGTACGGTTCTGTCGAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCCACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Protein sequence

MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A4GYN81.3e-4395.7030S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps... [more]
A4QJX72.2e-3891.8630S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
Q1KXY02.9e-3898.7530S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A... [more]
Q332V32.9e-3898.7530S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE... [more]
Q0G9J52.9e-3898.7530S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r... [more]
Match NameE-valueIdentityDescription
A0A6J1F0L12.1e-7199.30uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383... [more]
A0A3S3NSS01.2e-6392.9630S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O... [more]
A0A6A5N1Q87.4e-6190.14Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1[more]
A0A443Q5I99.6e-6189.4430S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O... [more]
U5CU386.9e-5987.32Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s02071p00004290... [more]
Match NameE-valueIdentityDescription
XP_022932068.14.3e-7199.30uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar... [more]
XP_038896566.16.8e-6996.5030S ribosomal protein S12, chloroplastic-like [Benincasa hispida][more]
XP_038902483.19.8e-6895.8030S ribosomal protein S12, chloroplastic-like [Benincasa hispida][more]
RWR98012.12.5e-6392.96LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran... [more]
KAF8091090.14.0e-6188.73hypothetical protein N665_0454s0031, partial [Sinapis alba][more]
Match NameE-valueIdentityDescription
ATCG00065.11.3e-38100.00ribosomal protein S12A [more]
ATCG01230.11.3e-38100.00ribosomal protein S12B [more]
ATCG00905.11.3e-38100.00ribosomal protein S12C [more]
AT2G07675.16.0e-2351.46Ribosomal protein S12/S23 family protein [more]
ATMG00980.16.0e-2351.46Ribosomal protein S12/S23 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 102..119
score: 88.58
coord: 119..135
score: 64.3
coord: 135..143
score: 32.37
coord: 67..82
score: 91.32
coord: 83..102
score: 75.14
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 58..138
e-value: 5.1E-30
score: 103.4
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 33..142
IPR006032Ribosomal protein S12/S23PROSITEPS00055RIBOSOMAL_S12coord: 68..75
NoneNo IPR availableGENE3D2.40.50.140coord: 11..142
e-value: 2.2E-46
score: 158.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..35
NoneNo IPR availablePANTHERPTHR11652:SF5230S RIBOSOMAL PROTEIN S12-Bcoord: 33..142
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 52..140
e-value: 1.9E-46
score: 154.9
IPR005679Ribosomal protein S12, bacterial-typeCDDcd03368Ribosomal_S12coord: 64..135
e-value: 8.57105E-54
score: 163.073
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 60..140

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0011363.1PI0011363.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome