PI0011308 (gene) Melon (PI 482460) v1

Overview


Name	PI0011308
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr05: 719568 .. 719804 (+)
RNA-Seq Expression	PI0011308
Synteny	PI0011308

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGCAGCGACAGGAACCAGAGGGACCCATCTCACCCATCCATTTCATTCAGCTACCATTCCCACACACAAAAAAAAGACTCTCGTTTTGTGCATTTCAAAACCTTTGTCTCTGAGGTTTGAAATTGAAAACTTCTCTCTCGAAAGAAACGAAGAAATTTCAGTAAACTTAAAAGCCCCTTTTTACTGTAAATCTAAGTCCCTTTTCCCCACTTCCGCCATTGTTACACTTTAA

mRNA sequence

ATGGCTGCAGCGACAGGAACCAGAGGGACCCATCTCACCCATCCATTTCATTCAGCTACCATTCCCACACACAAAAAAAAGACTCTCGTTTTGTGCATTTCAAAACCTTTGTCTCTGAGGTTTGAAATTGAAAACTTCTCTCTCGAAAGAAACGAAGAAATTTCAGTAAACTTAAAAGCCCCTTTTTACTGTAAATCTAAGTCCCTTTTCCCCACTTCCGCCATTGTTACACTTTAA

Coding sequence (CDS)

ATGGCTGCAGCGACAGGAACCAGAGGGACCCATCTCACCCATCCATTTCATTCAGCTACCATTCCCACACACAAAAAAAAGACTCTCGTTTTGTGCATTTCAAAACCTTTGTCTCTGAGGTTTGAAATTGAAAACTTCTCTCTCGAAAGAAACGAAGAAATTTCAGTAAACTTAAAAGCCCCTTTTTACTGTAAATCTAAGTCCCTTTTCCCCACTTCCGCCATTGTTACACTTTAA

Protein sequence

MAAATGTRGTHLTHPFHSATIPTHKKKTLVLCISKPLSLRFEIENFSLERNEEISVNLKAPFYCKSKSLFPTSAIVTL

Homology

[Close]

BLAST of PI0011308 vs. ExPASy TrEMBL
Match: A0A0A0LF06 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G003570 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 5.5e-26
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1  MAAATGTRGTHLTHPFHSATIPTHKKKTLVLCISKPLSLRFEIENFSLERNEEISVNLKA 60
          MAAATGTRGTHLTHPFHSATIPTHKK        KPLSLRFEIEN SLERN+EISV+LKA
Sbjct: 18 MAAATGTRGTHLTHPFHSATIPTHKKGLSFCAFQKPLSLRFEIENISLERNKEISVDLKA 77

Query: 61 PFYCKSKSLFPTSAIVTL 79
           F+CKSKSLFP SAIVTL
Sbjct: 78 TFHCKSKSLFPISAIVTL 95

[Close]

BLAST of PI0011308 vs. NCBI nr
Match: KGN60605.1 (hypothetical protein Csa_019255 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 1.1e-25
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0


Query: 1  MAAATGTRGTHLTHPFHSATIPTHKKKTLVLCISKPLSLRFEIENFSLERNEEISVNLKA 60
          MAAATGTRGTHLTHPFHSATIPTHKK        KPLSLRFEIEN SLERN+EISV+LKA
Sbjct: 18 MAAATGTRGTHLTHPFHSATIPTHKKGLSFCAFQKPLSLRFEIENISLERNKEISVDLKA 77

Query: 61 PFYCKSKSLFPTSAIVTL 79
           F+CKSKSLFP SAIVTL
Sbjct: 78 TFHCKSKSLFPISAIVTL 95

The following BLAST results are available for this feature:

BLAST of PI0011308 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011308 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LF06	5.5e-26	82.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G003570 PE=4 SV=1	[more]

BLAST of PI0011308 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60605.1	1.1e-25	82.05	hypothetical protein Csa_019255 [Cucumis sativus]	[more]

BLAST of PI0011308 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011308.1	PI0011308.1	mRNA