PI0011285 (gene) Melon (PI 482460) v1

Overview


Name	PI0011285
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr01: 20471007 .. 20471204 (-)
RNA-Seq Expression	PI0011285
Synteny	PI0011285

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTCATTAAGGATTATGATTGCACTATCGTCTATCACCCTGGAAAAGCTAACATGGTAGTTGACGCGTTGAGTAGAAAGAACCCTAGTAAAGGAAGAGTAGCCTTGCTAAGGGAATTTAGAGGTTGCAAGGCGATCTTAAATGCAGGAACAGTGGGAAATTTGATAGCTCATTTCAGGTTAAGCCCACATTAG

mRNA sequence

ATGGAGCTCATTAAGGATTATGATTGCACTATCGTCTATCACCCTGGAAAAGCTAACATGGTAGTTGACGCGTTGAGTAGAAAGAACCCTAGTAAAGGAAGAGTAGCCTTGCTAAGGGAATTTAGAGGTTGCAAGGCGATCTTAAATGCAGGAACAGTGGGAAATTTGATAGCTCATTTCAGGTTAAGCCCACATTAG

Coding sequence (CDS)

ATGGAGCTCATTAAGGATTATGATTGCACTATCGTCTATCACCCTGGAAAAGCTAACATGGTAGTTGACGCGTTGAGTAGAAAGAACCCTAGTAAAGGAAGAGTAGCCTTGCTAAGGGAATTTAGAGGTTGCAAGGCGATCTTAAATGCAGGAACAGTGGGAAATTTGATAGCTCATTTCAGGTTAAGCCCACATTAG

Protein sequence

MELIKDYDCTIVYHPGKANMVVDALSRKNPSKGRVALLREFRGCKAILNAGTVGNLIAHFRLSPH

Homology

[Close]

BLAST of PI0011285 vs. ExPASy TrEMBL
Match: A0A5A7UMR3 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00250 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.3e-16
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MELIKDYDCTIVYHPGKANMVVDALSRKNPS---KGRVALLREFRGCKAILNAGTVGNLI 60
          MELIKDY+ TI YHPGKAN+V +ALSRKNPS   KGR+A ++E R CK ILN G  GNLI
Sbjct: 1  MELIKDYNYTIAYHPGKANVVANALSRKNPSTEIKGRIAFVKELRCCKEILNTGLAGNLI 60

Query: 61 AHFRLSP 65
          A F++ P
Sbjct: 61 ARFQVKP 67

[Close]

BLAST of PI0011285 vs. ExPASy TrEMBL
Match: A0A5D3DMM3 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001300 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1   MELIKDYDCTIVYHPGKANMVVDALSRKNPS---KGRVALLREFRGCKAILNAGTVGNLI 60
           MELIKDYDCTI+YH GKAN+  DALSRK+ S   KG++ALL E R CK ILNA  +GNLI
Sbjct: 40  MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIGNLI 99

Query: 61  AHFR 62
           A F+
Sbjct: 100 ARFQ 103

[Close]

BLAST of PI0011285 vs. ExPASy TrEMBL
Match: A0A5A7UWA6 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001920 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1  MELIKDYDCTIVYHPGKANMVVDALSRKNPS---KGRVALLREFRGCKAILNAGTVGNLI 60
          M+LIKDYDCTI YH GKAN++ DALS K PS   +GR+ALLRE +G K IL A T GNL+
Sbjct: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60

Query: 61 AHFRLSP 65
          A F++ P
Sbjct: 61 ARFQVKP 67

[Close]

BLAST of PI0011285 vs. ExPASy TrEMBL
Match: A0A5A7VIK8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-13
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MELIKDYDCTIVYHPGKANMVVDALSRKNPS---KGRVALLREFRGCKAILNAGTVGNLI 60
          M+LIKDYDCTI Y+P K N++ DALSRK+ S   KGR+ALL++ RG K +LNAGT GN +
Sbjct: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60

Query: 61 AHFRLSP 65
          A F++ P
Sbjct: 61 ARFQVKP 67

[Close]

BLAST of PI0011285 vs. ExPASy TrEMBL
Match: A0A5A7SUU4 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00340 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.9e-12
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1  MELIKDYDCTIVYHPGKANMVVDALSRKN---PSKGRVALLREFRGCKAILNAGTVGNLI 60
          MELIKD+DCTIVYH  KAN+V D LSRK+    S GR+ALL+E R  K+ +++G+VG+ +
Sbjct: 15 MELIKDFDCTIVYHTSKANVVADVLSRKSFDIESGGRIALLQELRDYKSTMSSGSVGSFV 74

Query: 61 AHFRLSP 65
          A F++ P
Sbjct: 75 ARFQVKP 81

[Close]

BLAST of PI0011285 vs. NCBI nr
Match: KAA0054749.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 44/67 (65.67%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MELIKDYDCTIVYHPGKANMVVDALSRKNPS---KGRVALLREFRGCKAILNAGTVGNLI 60
          MELIKDY+ TI YHPGKAN+V +ALSRKNPS   KGR+A ++E R CK ILN G  GNLI
Sbjct: 1  MELIKDYNYTIAYHPGKANVVANALSRKNPSTEIKGRIAFVKELRCCKEILNTGLAGNLI 60

Query: 61 AHFRLSP 65
          A F++ P
Sbjct: 61 ARFQVKP 67

[Close]

BLAST of PI0011285 vs. NCBI nr
Match: KAA0059914.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 8.3e-14
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1   MELIKDYDCTIVYHPGKANMVVDALSRKNPS---KGRVALLREFRGCKAILNAGTVGNLI 60
           MELIKDYDCTI+YH GKAN+  DALSRK+ S   KG++ALL E R CK ILNA  +GNLI
Sbjct: 40  MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIGNLI 99

Query: 61  AHFR 62
           A F+
Sbjct: 100 ARFQ 103

[Close]

BLAST of PI0011285 vs. NCBI nr
Match: KAA0067194.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 40/67 (59.70%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MELIKDYDCTIVYHPGKANMVVDALSRKNPS---KGRVALLREFRGCKAILNAGTVGNLI 60
          M+LIKDYDCTI Y+P K N++ DALSRK+ S   KGR+ALL++ RG K +LNAGT GN +
Sbjct: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60

Query: 61 AHFRLSP 65
          A F++ P
Sbjct: 61 ARFQVKP 67

[Close]

BLAST of PI0011285 vs. NCBI nr
Match: KAA0058456.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK07290.1 CCHC-type integrase [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-13
Identity = 42/67 (62.69%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1  MELIKDYDCTIVYHPGKANMVVDALSRKNPS---KGRVALLREFRGCKAILNAGTVGNLI 60
          M+LIKDYDCTI YH GKAN++ DALS K PS   +GR+ALLRE +G K IL A T GNL+
Sbjct: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60

Query: 61 AHFRLSP 65
          A F++ P
Sbjct: 61 ARFQVKP 67

[Close]

BLAST of PI0011285 vs. NCBI nr
Match: KAA0035002.1 (polyprotein [Cucumis melo var. makuwa] >TYK02342.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1  MELIKDYDCTIVYHPGKANMVVDALSRKN---PSKGRVALLREFRGCKAILNAGTVGNLI 60
          MELIKD+DCTIVYH  KAN+V D LSRK+    S GR+ALL+E R  K+ +++G+VG+ +
Sbjct: 15 MELIKDFDCTIVYHTSKANVVADVLSRKSFDIESGGRIALLQELRDYKSTMSSGSVGSFV 74

Query: 61 AHFRLSP 65
          A F++ P
Sbjct: 75 ARFQVKP 81

The following BLAST results are available for this feature:

BLAST of PI0011285 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011285 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UMR3	7.3e-16	65.67	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5D3DMM3	4.0e-14	67.19	CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G...	[more]
A0A5A7UWA6	1.2e-13	62.69	CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G...	[more]
A0A5A7VIK8	1.2e-13	59.70	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE...	[more]
A0A5A7SUU4	4.9e-12	55.22	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00340 PE...	[more]

BLAST of PI0011285 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054749.1	1.5e-15	65.67	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0059914.1	8.3e-14	67.19	CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [...	[more]
KAA0067194.1	2.4e-13	59.70	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0058456.1	2.4e-13	62.69	CCHC-type integrase [Cucumis melo var. makuwa] >TYK07290.1 CCHC-type integrase [...	[more]
KAA0035002.1	1.0e-11	55.22	polyprotein [Cucumis melo var. makuwa] >TYK02342.1 polyprotein [Cucumis melo var...	[more]

BLAST of PI0011285 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011285.1	PI0011285.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0005488	binding