PI0011281 (gene) Melon (PI 482460) v1

Overview


Name	PI0011281
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr01: 21234050 .. 21238183 (-)
RNA-Seq Expression	PI0011281
Synteny	PI0011281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAACCAAGCTCCAACTGGAGGAGCTGTACCAGTTAATAAGGTGAAAATCCCCGAACCCAAACCCTTCTGTGGGGTGTGGGATGCGAAAGCCTTGGAGAACTTCATATTCGACCTAGAACAATACTTCCGGGCCACAAACACTGTTGCGGAAGAAGCGAAAGTGACACTAGCAACGATGCACTTAGCTGAAGATGCAAAGTTGTGGTGGAGGTCCCGATATGTTGAGATCCAAGAGGGACGATGTACGGTAGACACCTGGGACAGTTTAAAGAAAGAACTACGCTCTCAGTTCTTCCCTGAGAATGTGGAAATCCTTGCTCAACGAAAGTTGCGTGAACTAAAACACACCGGTAGCGTTCGGGAGTATGTGAAGCAGTTTGCAGGACTCATGTTAGACATACGCGATATGTCCGAGAAAGACAAAAAATTTTGTTTTGTCGAAGGCCTTAAACCGTGGGCAAGGGCCAAGTTGTATGAACAGGGGGTCCAAGAACTCTCGTCGGCGTACGCAGCAGCAGAACAACTGTTCGATCTGTCCTCTGACTCTCAAGATGAGACTCGTCCTCCAAGTCCCTCACCTGAAAGAGATGAGGACGATTGTGTAAGTTCTCCGAAGGCTGGAGGGGGAGATAAACGGTCTAATGGTGATCGTAGTTGTGTAAGTTCTCCGAGGGTCGGAGGGGGAGATAAACGACCTAATGGTGATCGTAGGCCCTTCCAATCAAATCCCGGGAGCCCGGAGCGAAGACAGAACCACCAGAAACCTCGCAGTCGTCCCCTTGCCTGTTTCATATGTAAGGGGCCGCACCTGGCGAGAGAATGCCCGAATTGGGCCACCTTTTACGCCTTTCAGGCTGCCTTAGCCCCAGATTCAGAAGACAAGAAGGGTCGGGCCGGGGACAAAGGTGCCCAAATAGAAGGCGATTACCCCAGGGTAGGGGCCCTAAGGTTTCTAGCGTCTCTCCAAAGGAAAGTGGGGGAGACAAGTGAACCAATAGGAAGGGGCCTAATGTATGTCGACACCCGAATCAACCAGAAGTTGGCTAAGAGTACTATGGTTGACTCCGGTGCGACCCACAACTTCATTACCAAGGCAGAAGCCCGTCAATTAAATCTCCACTGGGAGAGGGACACGGGAAAGATGAAGGCCGTGAATTCTGTTGCTTTACCTATCGTCGGTGTAGTAAGACGAACGATGATAAGTTTGGGAGAATGGAATGGCCGTACAGACTTCGTAGTTGTCAAGATGGACGACTTCGACATGGTATTGGGAATGAAATTTTTGCTAGAACATCAAGCGATACCGATGTCTCTAGCCAAATGCCTGGTGATCACGGGATCCAATCCCACCGTTGTGCAGACAGACATTCGTCAGCCCAATGAATTAAAAATGATTTCAGCCCTACAGCTGAGGAAGGGCCTCGCTCGCGATGAACCGGTTGTCATCGCCACTCCGCTTAAACCGCTGGGGATTCAGGAAAAAGTAGCCTCGAAAGACGTTCAGCGTACCGTAGAGAAATATAACGATAGGGGGCCTGATAGTCTGCCCAAGACTCAACCGCCGACAGGGAATGCTTATCGTACGACACCCCCCGAGCTGGTAGAACTTCAGAAACAGTTGGAAGAGTTGTTGAGCGCAGGGTTCATTAAGCCTGCGAAGGCTCCATATAGGGCCCCAATCCCCTTTCAAAAGCTGAGGTCACAAGCTCACAATTCCACAAGAGAGTGGAAACGGACAGCAGACGTCACCCAAGCTTATTTAGAGAAGGCCTCCGGACGGATGAAGAAGCGGGCAGGGAAGAAACGTCGCCCCCTCGAGTTTCAGGCGGAAGACTGGGTCCTCATCAAAATGCGATCAGGACAAGGCTTGTTTCGAGGACGTACGAACCAACACCTCGCTAGGAAATACGGGGGACCTGTTGAAGTCCTCAGGAAGGTGGGAAAAACATCCTACCGAGTGGCGTTGCCCACGTGGATGAAAATGCATCCAACAATCCACGTGAGTAACCTAAAGCCCTACCACAAAGACCCCGGTGACACACGATGCAACGTTGTCAGCCTGCCAAACATCAGTCTGAACCAAAAGGAAGAAGACCGAGATGTTGAAGAAATCCTTGCCGACCGGGTAAGGAAGGGTAGAAGACCCACGAGGAGGATCCACGAATTCCTGGTCAAGTGGAAGGATCTCCCCGTGGAAGAGACCAGTTGGGAACCTGTGGAAGACCTAGAAGCTTGGAAGCAGAAGATCGAAGAATTCCAGCTTCGCCAGTCGACAGAGACGTCAACTGTTTAAGTAGGGGAGAATGTCACGGTCATGCTTGTCCAGGACGTTGTTTGCCTGTGGCCGCATGCTCGAACATCCTCGCATGCTTGTCCAGGGCGTTGTTTGCCTGTGGCCGCATGCTCGAACACCTTCACCCCACCTTACGTTATGTTTTTCCTTTACTTTCCATGTCACTTTGCTTTTACTTTCATTGTCGCTTTATGCTTTCATTTACATTCCATGTCGCTTAGCTTTTACCTTCTATGTCGCCTAGTGACATTTCGCACATTTTGATATGCAAGCCTGGCAGATCATAAAATGTGCAAAATATACTATAGGGGAGTACCATCAGTCATATCCCCGACTAAGCCTTGTCGTACTCTTTGCAATCTAAGCTTTCTTTGCAATTGACAGTCTTCAAAGCTTTCTTTAACGATGTTTTCAACAATCTGTTTTCTCTCTCACGTTTTATAAAACATTCTCTCTCAAAACGTGAAGGGAGGCTTCATCGTTCCGCGAGTTTGTCCGCGGGTTTCGAATTTCGAACGGCTGACTTGTTCATCGAGCTAGAACAAGTGCCGCACAATCGCTTGCCTCGCCCTTGAAAGGCTACGATTGTGACACCCTGCAGCAGTTAACAGTCTAGGAATCACGAAGGAGTTCCACAATACAGTCTGGCGGCCCAAAAGACTCACCTAATCAGTCTGGTGATCCCGAAGGATGCACCTAATCAGTCTAGCGATCCCGAAGGATACGCCCATCAGTCTGGCGGCCCGAAGAACACACCTAATTAGTCTGGTGATCCCGAAGGATACACCCAATAACGTCATGTAGGACTACATGCATACAGGTACACTATCATAGCTAAAGATAACCGTTCACCTATCGCCTACATAATACATGTCATTTACACTATCCAGAATACTCATCAAGAGGCAAAACCTCAATTATTCATGCTTTGATATTACTAAGTCCGTAATCAAGATAAGAACATAACATGATACCATAGGATACTTCACACATGCCAACAATCAACAACAACAGAAATCTCCAAATCCAATCACGGTCACATGTAAGGAATTTATGTTCAAGGCATTTTACATTTGCTAATACGGTAGAGGAATCCCTTACTTCAAGTGTGCTAAGCAAAGTGCACTACGCGGCAAGGAGAACCAAAACGCAAGAAGGGTGAGCTCCAACGCCCACTCCTCGGCGAAACCACAATGCTACACAGCAAGACCAACTACAATGCGAAATAACCAAGTCCTAAGATTCGGAATAGAACAATTCCAAGTCAAAACCGGCGAAGACTTACCTCAAACAGTCCAAGGGAGCTCGCGGCAAGGAGAGGCGGGTAGAGGACCTCAAAACGCGGTAAGGCTCCTCAGCTCGCAGGCAAAGGGGAGGAACTTAGCGGAACGCGAGGCTGTTCGCGGACAACGACTGGCGGCAAGAGAAGCTCGCAAACGAATACCTCAGCTCATGAACAGGGTTCCTTAGCTCGCGAACAAGGCTTCACAGCTCGCGAACAAGGGAGCTGTCAAAGAAAATGGGTTACTTCGCGGGGTAGCTAGGAAGAACGAAACAGAACGCAGAGTGAAGCTAGGCGAGATGGAGAAAGGTTTTCGGGGAACTTACCTACGAAGACATTCAACGGGGGTCAAGCTTGGCGAAAGAAGGGTCTTACGCCGCGCTACCTTGCAAGGCGAACCAACCCAGACCACACAAGCAAGCTACAAGGGCTTCCAGCGGTACGGGCAGGCAGAGAAGAAGCTCCGGACGGCGAGGCAACGCGCGACGCTAGGTTTTCTTGAGAGAGAAAGGCTGCTCGGGATACTACACGCAAAGAAGAAAGAAGAAAAGTGA

mRNA sequence

ATGGCAAACCAAGCTCCAACTGGAGGAGCTGTACCAGGGGTCCAAGAACTCTCGTCGGCGTACGCAGCAGCAGAACAACTGTTCGATCTGTCCTCTGACTCTCAAGATGAGACTCGTCCTCCAAGTCCCTCACCTGAAAGAGATGAGGACGATTGTGTAAGTTCTCCGAAGGCTGGAGGGGGAGATAAACGGTCTAATGGTGATCGTAGTTGTGTAAGTTCTCCGAGGGTCGGAGGGGGAGATAAACGACCTAATGGTGATCGTAGGCCCTTCCAATCAAATCCCGGGAGCCCGGAGCGAAGACAGAACCACCAGAAACCTCGCAGTCGTCCCCTTGCCTGTTTCATATGTAAGGGGCCGCACCTGGCGAGAGAATGCCCGAATTGGGCCACCTTTTACGCCTTTCAGGCTGCCTTAGCCCCAGATTCAGAAGACAAGAAGGGTCGGGCCGGGGACAAAGGTGCCCAAATAGAAGGCGATTACCCCAGGACAGACATTCGTCAGCCCAATGAATTAAAAATGATTTCAGCCCTACAGCTGAGGAAGGGCCTCGCTCGCGATGAACCGGTTGTCATCGCCACTCCGCTTAAACCGCTGGGGATTCAGGAAAAAGTAGCCTCGAAAGACGTTCAGCGTACCCTGAGGTCACAAGCTCACAATTCCACAAGAGAGTGGAAACGGACAGCAGACGTCACCCAAGCTTATTTAGAGAAGGCCTCCGGACGGATGAAGAAGCGGGCAGGGAAGAAACGTCGCCCCCTCGAGTTTCAGGCGGAAGACTGGGTCCTCATCAAAATGCGATCAGGACAAGGCTTGTTTCGAGGACGTACGAACCAACACCTCGCTAGGAAATACGGGGGACCTGTTGAAGTCCTCAGGAAGGTGGGAAAAACATCCTACCGAGTGGCGTTGCCCACGTGGATGAAAATGCATCCAACAATCCACGTGAGTAACCTAAAGCCCTACCACAAAGACCCCGGTGACACACGATGCAACGTTGTCAGCCTGCCAAACATCAGTCTGAACCAAAAGGAAGAAGACCGAGATGTTGAAGAAATCCTTGCCGACCGGTGTGCTAAGCAAAGTGCACTACGCGGCAAGGAGAACCAAAACGCAAGAAGGGTGAGCTCCAACGCCCACTCCTCGGCGAAACCACAATGCTACACAGCAAGACCAACTACAATGCGAAATAACCAAGTCCTAAGATTCGGAATAGAACAATTCCAAGTCAAAACCGGCGAAGACTTACCTCAAACAGTCCAAGGGAGCTCGCGGCAAGGAGAGGCGGGTAGAGGACCTCAAAACGCGGTAAGGCTCCTCAGCTCGCAGGCAAAGGGGAGGAACTTAGCGGAACGCGAGGCTGTTCGCGGACAACGACTGGCGGCAAGAGAAGCTCGCAAACGAATACCTCAGCTCATGAACAGGCTCGCGAACAAGGCTTCACAGCTCGCGAACAAGGGAGCTGTCAAAGAAAATGGGTTACTTCGCGGGGTAGCTAGGAAGAACGAAACAGAACGCAGAGTGAAGCTAGGCGAGATGGAGAAAGGTTTTCGGGGAACTTACCTACGAAGACATTCAACGGGGGTCAAGCTTGGCGAAAGAAGGGTCTTACGCCGCGCTACCTTGCAAGGCGAACCAACCCAGACCACACAAGCAAGCTACAAGGGCTTCCAGCGGTACGGGCAGGCAGAGAAGAAGCTCCGGACGGCGAGGCAACGCGCGACGCTAGGTTTTCTTGAGAGAGAAAGGCTGCTCGGGATACTACACGCAAAGAAGAAAGAAGAAAAGTGA

Coding sequence (CDS)

ATGGCAAACCAAGCTCCAACTGGAGGAGCTGTACCAGGGGTCCAAGAACTCTCGTCGGCGTACGCAGCAGCAGAACAACTGTTCGATCTGTCCTCTGACTCTCAAGATGAGACTCGTCCTCCAAGTCCCTCACCTGAAAGAGATGAGGACGATTGTGTAAGTTCTCCGAAGGCTGGAGGGGGAGATAAACGGTCTAATGGTGATCGTAGTTGTGTAAGTTCTCCGAGGGTCGGAGGGGGAGATAAACGACCTAATGGTGATCGTAGGCCCTTCCAATCAAATCCCGGGAGCCCGGAGCGAAGACAGAACCACCAGAAACCTCGCAGTCGTCCCCTTGCCTGTTTCATATGTAAGGGGCCGCACCTGGCGAGAGAATGCCCGAATTGGGCCACCTTTTACGCCTTTCAGGCTGCCTTAGCCCCAGATTCAGAAGACAAGAAGGGTCGGGCCGGGGACAAAGGTGCCCAAATAGAAGGCGATTACCCCAGGACAGACATTCGTCAGCCCAATGAATTAAAAATGATTTCAGCCCTACAGCTGAGGAAGGGCCTCGCTCGCGATGAACCGGTTGTCATCGCCACTCCGCTTAAACCGCTGGGGATTCAGGAAAAAGTAGCCTCGAAAGACGTTCAGCGTACCCTGAGGTCACAAGCTCACAATTCCACAAGAGAGTGGAAACGGACAGCAGACGTCACCCAAGCTTATTTAGAGAAGGCCTCCGGACGGATGAAGAAGCGGGCAGGGAAGAAACGTCGCCCCCTCGAGTTTCAGGCGGAAGACTGGGTCCTCATCAAAATGCGATCAGGACAAGGCTTGTTTCGAGGACGTACGAACCAACACCTCGCTAGGAAATACGGGGGACCTGTTGAAGTCCTCAGGAAGGTGGGAAAAACATCCTACCGAGTGGCGTTGCCCACGTGGATGAAAATGCATCCAACAATCCACGTGAGTAACCTAAAGCCCTACCACAAAGACCCCGGTGACACACGATGCAACGTTGTCAGCCTGCCAAACATCAGTCTGAACCAAAAGGAAGAAGACCGAGATGTTGAAGAAATCCTTGCCGACCGGTGTGCTAAGCAAAGTGCACTACGCGGCAAGGAGAACCAAAACGCAAGAAGGGTGAGCTCCAACGCCCACTCCTCGGCGAAACCACAATGCTACACAGCAAGACCAACTACAATGCGAAATAACCAAGTCCTAAGATTCGGAATAGAACAATTCCAAGTCAAAACCGGCGAAGACTTACCTCAAACAGTCCAAGGGAGCTCGCGGCAAGGAGAGGCGGGTAGAGGACCTCAAAACGCGGTAAGGCTCCTCAGCTCGCAGGCAAAGGGGAGGAACTTAGCGGAACGCGAGGCTGTTCGCGGACAACGACTGGCGGCAAGAGAAGCTCGCAAACGAATACCTCAGCTCATGAACAGGCTCGCGAACAAGGCTTCACAGCTCGCGAACAAGGGAGCTGTCAAAGAAAATGGGTTACTTCGCGGGGTAGCTAGGAAGAACGAAACAGAACGCAGAGTGAAGCTAGGCGAGATGGAGAAAGGTTTTCGGGGAACTTACCTACGAAGACATTCAACGGGGGTCAAGCTTGGCGAAAGAAGGGTCTTACGCCGCGCTACCTTGCAAGGCGAACCAACCCAGACCACACAAGCAAGCTACAAGGGCTTCCAGCGGTACGGGCAGGCAGAGAAGAAGCTCCGGACGGCGAGGCAACGCGCGACGCTAGGTTTTCTTGAGAGAGAAAGGCTGCTCGGGATACTACACGCAAAGAAGAAAGAAGAAAAGTGA

Protein sequence

MANQAPTGGAVPGVQELSSAYAAAEQLFDLSSDSQDETRPPSPSPERDEDDCVSSPKAGGGDKRSNGDRSCVSSPRVGGGDKRPNGDRRPFQSNPGSPERRQNHQKPRSRPLACFICKGPHLARECPNWATFYAFQAALAPDSEDKKGRAGDKGAQIEGDYPRTDIRQPNELKMISALQLRKGLARDEPVVIATPLKPLGIQEKVASKDVQRTLRSQAHNSTREWKRTADVTQAYLEKASGRMKKRAGKKRRPLEFQAEDWVLIKMRSGQGLFRGRTNQHLARKYGGPVEVLRKVGKTSYRVALPTWMKMHPTIHVSNLKPYHKDPGDTRCNVVSLPNISLNQKEEDRDVEEILADRCAKQSALRGKENQNARRVSSNAHSSAKPQCYTARPTTMRNNQVLRFGIEQFQVKTGEDLPQTVQGSSRQGEAGRGPQNAVRLLSSQAKGRNLAEREAVRGQRLAAREARKRIPQLMNRLANKASQLANKGAVKENGLLRGVARKNETERRVKLGEMEKGFRGTYLRRHSTGVKLGERRVLRRATLQGEPTQTTQASYKGFQRYGQAEKKLRTARQRATLGFLERERLLGILHAKKKEEK

Homology

[Close]

BLAST of PI0011281 vs. ExPASy TrEMBL
Match: A0A5D3C8Z6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00760 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.2e-43
Identity = 95/141 (67.38%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 217  QAHNSTREWKRTADVTQAYLEKASGRMKKRAGKKRRPLEFQAEDWVLIKMRSGQGLFRGR 276
            QA N T+EWK+T D+ +AYLEKAS RMKK A KKRRPLEF+AED VLIK+R  Q  FRG 
Sbjct: 1371 QALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAEDQVLIKLRPEQVRFRGH 1430

Query: 277  TNQHLARKYGGPVEVLRKVGKTSYRVALPTWMKMHPTIHVSNLKPYHKDPGDTRCNVVSL 336
             +QHL RKY GP++VL+KVG TSYRV LPTWMK++P IHVSNLKPYH+D  D + N+V+ 
Sbjct: 1431 KDQHLVRKYEGPIQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTR 1490

Query: 337  PNISLNQKEEDRDVEEILADR 358
            P I L+QK ED+DVEEILA+R
Sbjct: 1491 PIIDLSQK-EDKDVEEILAER 1510

[Close]

BLAST of PI0011281 vs. ExPASy TrEMBL
Match: A0A5D3C8Z6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00760 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-23
Identity = 79/171 (46.20%), Postives = 103/171 (60.23%), Query Frame = 0


Query: 14  VQELSSAYAAAEQLFDLSSDSQDETRPPSPSPERDEDDCVSSPKAGGGDKRSNGDRSCVS 73
           VQ+L+SAYAAAE+LFDLS+DSQD  R PS S                G  R+N      S
Sbjct: 309 VQDLTSAYAAAERLFDLSNDSQDTRRHPSSS---------------SGGSRNNRP----S 368

Query: 74  SPRVGGGDKRPNGDRRPFQSNPGSPERRQNHQKPRSRPLACFICKGPHLARECPNWATFY 133
           SP+  GGD+R +GDRR  QSN G+  R  ++Q   +RPL+CFICKGPH+ARECPN   F 
Sbjct: 369 SPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMARECPNKTAFN 428

Query: 134 AFQAALAPDSEDKKGRA-GDKGAQIEGDYPRTDIRQPNELKMISALQLRKG 184
           AFQA+L  DS++++ +  G+     E D PR        LK +S+LQ + G
Sbjct: 429 AFQASLTSDSDNQQSQTEGEVNQTEEVDNPRM-----GALKFLSSLQKKVG 455

HSP 2 Score: 56.6 bits (135), Expect = 4.1e-04
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 163 RTDIRQPNELKMISALQLRKGLARDEPVVIATPLKPLGIQEKVASKDVQRTL 215
           +TD+RQP+ LKMISA+QL+KGL+RDEP  +A PLK      +   K++ R L
Sbjct: 582 QTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 633

HSP 3 Score: 188.0 bits (476), Expect = 1.2e-43
Identity = 97/141 (68.79%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 217 QAHNSTREWKRTADVTQAYLEKASGRMKKRAGKKRRPLEFQAEDWVLIKMRSGQGLFRGR 276
           QA N T+EW++T D+ +AYLEKAS RMKK A KKRRPLEF+A D VLIK+RS Q  FRGR
Sbjct: 854 QALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRSEQVRFRGR 913

Query: 277 TNQHLARKYGGPVEVLRKVGKTSYRVALPTWMKMHPTIHVSNLKPYHKDPGDTRCNVVSL 336
            +Q L RKY GPVEVL+KVG TSYRVALPTWMK++P IHVSNLKPYH+D  D + N+V+ 
Sbjct: 914 KDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTR 973

Query: 337 PNISLNQKEEDRDVEEILADR 358
           P I L+QK ED+DVEEILA+R
Sbjct: 974 PIIDLSQK-EDKDVEEILAER 993

[Close]

BLAST of PI0011281 vs. ExPASy TrEMBL
Match: A0A5A7SQA2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G005090 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 4.1e-04
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 163 RTDIRQPNELKMISALQLRKGLARDEPVVIATPLKPLGIQEKVASKDVQRTL 215
           +TD+RQP+ LKMISA+QL+KGL+RDEP  +A PLK      +   K++ R L
Sbjct: 102 QTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 153

HSP 2 Score: 187.6 bits (475), Expect = 1.5e-43
Identity = 97/141 (68.79%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 217  QAHNSTREWKRTADVTQAYLEKASGRMKKRAGKKRRPLEFQAEDWVLIKMRSGQGLFRGR 276
            QA N T+EW++T D+ +AYLEKAS RMKK A KKRRPLEF+A D VLIK+R  Q  FRGR
Sbjct: 1393 QALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGR 1452

Query: 277  TNQHLARKYGGPVEVLRKVGKTSYRVALPTWMKMHPTIHVSNLKPYHKDPGDTRCNVVSL 336
             +Q L RKY GPVEVL+KVG TSYRVALPTWMK++P IHVSNLKPYH+D  D + NVV+ 
Sbjct: 1453 KDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTR 1512

Query: 337  PNISLNQKEEDRDVEEILADR 358
            P I L+QK ED+DVEEILA+R
Sbjct: 1513 PTIDLSQK-EDKDVEEILAER 1532

[Close]

BLAST of PI0011281 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 8.7e-23
Identity = 79/171 (46.20%), Postives = 103/171 (60.23%), Query Frame = 0


Query: 14  VQELSSAYAAAEQLFDLSSDSQDETRPPSPSPERDEDDCVSSPKAGGGDKRSNGDRSCVS 73
           VQ+L+SAYAAAE+LFDLS+DSQD  R PS S                G  R+N      S
Sbjct: 309 VQDLTSAYAAAERLFDLSNDSQDTRRHPSSS---------------SGGSRNNRP----S 368

Query: 74  SPRVGGGDKRPNGDRRPFQSNPGSPERRQNHQKPRSRPLACFICKGPHLARECPNWATFY 133
           SP+  GGD+R +GDRR  QSN G+  R  ++Q   +RPL+CFICKGPH+ARECPN   F 
Sbjct: 369 SPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMARECPNKTAFN 428

Query: 134 AFQAALAPDSEDKKGRA-GDKGAQIEGDYPRTDIRQPNELKMISALQLRKG 184
           AFQA+L  DS++++ +  G+     E D PR        LK +S+LQ + G
Sbjct: 429 AFQASLTSDSDNQQSQTEGEVNQTEEVDNPRM-----GALKFLSSLQKKVG 455

HSP 2 Score: 56.6 bits (135), Expect = 4.1e-04
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 163 RTDIRQPNELKMISALQLRKGLARDEPVVIATPLKPLGIQEKVASKDVQRTL 215
           +TD+RQP+ LKMISA+QL+KGL+RDEP  +A PLK      +   K++ R L
Sbjct: 582 QTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 633

HSP 3 Score: 187.6 bits (475), Expect = 1.5e-43
Identity = 97/141 (68.79%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 217 QAHNSTREWKRTADVTQAYLEKASGRMKKRAGKKRRPLEFQAEDWVLIKMRSGQGLFRGR 276
           QA N T+EW++T D+ +AYLEKAS RMKK A KKRRPLEF+A D VLIK+R  Q  FRGR
Sbjct: 65  QALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGR 124

Query: 277 TNQHLARKYGGPVEVLRKVGKTSYRVALPTWMKMHPTIHVSNLKPYHKDPGDTRCNVVSL 336
            +Q L RKY GPVEVL+KVG TSYRVALPTWMK++P IHVSNLKPYH+D  D + NVV+ 
Sbjct: 125 KDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTR 184

Query: 337 PNISLNQKEEDRDVEEILADR 358
           P I L+QK ED+DVEEILA+R
Sbjct: 185 PTIDLSQK-EDKDVEEILAER 204

[Close]

BLAST of PI0011281 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.5e-43
Identity = 97/141 (68.79%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 217  QAHNSTREWKRTADVTQAYLEKASGRMKKRAGKKRRPLEFQAEDWVLIKMRSGQGLFRGR 276
            QA N T+EW++T D+ +AYLEKAS RMKK A KKRRPLEF+A D VLIK+R  Q  FRGR
Sbjct: 1393 QALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGR 1452

Query: 277  TNQHLARKYGGPVEVLRKVGKTSYRVALPTWMKMHPTIHVSNLKPYHKDPGDTRCNVVSL 336
             +Q L RKY GPVEVL+KVG TSYRVALPTWMK++P IHVSNLKPYH+D  D + NVV+ 
Sbjct: 1453 KDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTR 1512

Query: 337  PNISLNQKEEDRDVEEILADR 358
            P I L+QK ED+DVEEILA+R
Sbjct: 1513 PTIDLSQK-EDKDVEEILAER 1532

[Close]

BLAST of PI0011281 vs. NCBI nr
Match: KAA0031721.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 188.0 bits (476), Expect = 2.4e-43
Identity = 97/141 (68.79%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 217 QAHNSTREWKRTADVTQAYLEKASGRMKKRAGKKRRPLEFQAEDWVLIKMRSGQGLFRGR 276
           QA N T+EW++T D+ +AYLEKAS RMKK A KKRRPLEF+A D VLIK+RS Q  FRGR
Sbjct: 854 QALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRSEQVRFRGR 913

Query: 277 TNQHLARKYGGPVEVLRKVGKTSYRVALPTWMKMHPTIHVSNLKPYHKDPGDTRCNVVSL 336
            +Q L RKY GPVEVL+KVG TSYRVALPTWMK++P IHVSNLKPYH+D  D + N+V+ 
Sbjct: 914 KDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTR 973

Query: 337 PNISLNQKEEDRDVEEILADR 358
           P I L+QK ED+DVEEILA+R
Sbjct: 974 PIIDLSQK-EDKDVEEILAER 993

[Close]

BLAST of PI0011281 vs. NCBI nr
Match: KAA0031721.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 8.4e-04
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 163 RTDIRQPNELKMISALQLRKGLARDEPVVIATPLKPLGIQEKVASKDVQRTL 215
           +TD+RQP+ LKMISA+QL+KGL+RDEP  +A PLK      +   K++ R L
Sbjct: 102 QTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 153

HSP 2 Score: 188.0 bits (476), Expect = 2.4e-43
Identity = 95/141 (67.38%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 217  QAHNSTREWKRTADVTQAYLEKASGRMKKRAGKKRRPLEFQAEDWVLIKMRSGQGLFRGR 276
            QA N T+EWK+T D+ +AYLEKAS RMKK A KKRRPLEF+AED VLIK+R  Q  FRG 
Sbjct: 1371 QALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAEDQVLIKLRPEQVRFRGH 1430

Query: 277  TNQHLARKYGGPVEVLRKVGKTSYRVALPTWMKMHPTIHVSNLKPYHKDPGDTRCNVVSL 336
             +QHL RKY GP++VL+KVG TSYRV LPTWMK++P IHVSNLKPYH+D  D + N+V+ 
Sbjct: 1431 KDQHLVRKYEGPIQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTR 1490

Query: 337  PNISLNQKEEDRDVEEILADR 358
            P I L+QK ED+DVEEILA+R
Sbjct: 1491 PIIDLSQK-EDKDVEEILAER 1510

[Close]

BLAST of PI0011281 vs. NCBI nr
Match: TYK07955.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-22
Identity = 79/171 (46.20%), Postives = 103/171 (60.23%), Query Frame = 0


Query: 14  VQELSSAYAAAEQLFDLSSDSQDETRPPSPSPERDEDDCVSSPKAGGGDKRSNGDRSCVS 73
           VQ+L+SAYAAAE+LFDLS+DSQD  R PS S                G  R+N      S
Sbjct: 309 VQDLTSAYAAAERLFDLSNDSQDTRRHPSSS---------------SGGSRNNRP----S 368

Query: 74  SPRVGGGDKRPNGDRRPFQSNPGSPERRQNHQKPRSRPLACFICKGPHLARECPNWATFY 133
           SP+  GGD+R +GDRR  QSN G+  R  ++Q   +RPL+CFICKGPH+ARECPN   F 
Sbjct: 369 SPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMARECPNKTAFN 428

Query: 134 AFQAALAPDSEDKKGRA-GDKGAQIEGDYPRTDIRQPNELKMISALQLRKG 184
           AFQA+L  DS++++ +  G+     E D PR        LK +S+LQ + G
Sbjct: 429 AFQASLTSDSDNQQSQTEGEVNQTEEVDNPRM-----GALKFLSSLQKKVG 455

HSP 2 Score: 56.6 bits (135), Expect = 8.4e-04
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 163 RTDIRQPNELKMISALQLRKGLARDEPVVIATPLKPLGIQEKVASKDVQRTL 215
           +TD+RQP+ LKMISA+QL+KGL+RDEP  +A PLK      +   K++ R L
Sbjct: 582 QTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 633

HSP 3 Score: 187.6 bits (475), Expect = 3.2e-43
Identity = 97/141 (68.79%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 217  QAHNSTREWKRTADVTQAYLEKASGRMKKRAGKKRRPLEFQAEDWVLIKMRSGQGLFRGR 276
            QA N T+EW++T D+ +AYLEKAS RMKK A KKRRPLEF+A D VLIK+R  Q  FRGR
Sbjct: 1389 QALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGR 1448

Query: 277  TNQHLARKYGGPVEVLRKVGKTSYRVALPTWMKMHPTIHVSNLKPYHKDPGDTRCNVVSL 336
             +Q L RKY GPVEVL+KVG TSYRVALPTWMK++P IHVSNLKPYH+D  D + NVV+ 
Sbjct: 1449 KDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTR 1508

Query: 337  PNISLNQKEEDRDVEEILADR 358
            P I L+QK ED+DVEEILA+R
Sbjct: 1509 PTIDLSQK-EDKDVEEILAER 1528

[Close]

BLAST of PI0011281 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 118.6 bits (296), Expect = 1.8e-22
Identity = 79/171 (46.20%), Postives = 103/171 (60.23%), Query Frame = 0


Query: 14  VQELSSAYAAAEQLFDLSSDSQDETRPPSPSPERDEDDCVSSPKAGGGDKRSNGDRSCVS 73
           VQ+L+SAYAAAE+LFDLS+DSQD  R PS S                G  R+N      S
Sbjct: 305 VQDLTSAYAAAERLFDLSNDSQDTRRHPSSS---------------SGGSRNNRP----S 364

Query: 74  SPRVGGGDKRPNGDRRPFQSNPGSPERRQNHQKPRSRPLACFICKGPHLARECPNWATFY 133
           SP+  GGD+R +GDRR  QSN G+  R  ++Q   +RPL+CFICKGPH+ARECPN   F 
Sbjct: 365 SPKTTGGDRRFSGDRRSHQSNTGNSWRGSSNQNLSNRPLSCFICKGPHMARECPNKTAFN 424

Query: 134 AFQAALAPDSEDKKGRA-GDKGAQIEGDYPRTDIRQPNELKMISALQLRKG 184
           AFQA+L  DS++++ +  G+     E D PR        LK +S+LQ + G
Sbjct: 425 AFQASLTSDSDNQQSQTEGEVNQTEEVDNPRM-----GALKFLSSLQKKVG 451

HSP 2 Score: 56.6 bits (135), Expect = 8.4e-04
Identity = 27/52 (51.92%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 163 RTDIRQPNELKMISALQLRKGLARDEPVVIATPLKPLGIQEKVASKDVQRTL 215
           +TD+RQP+ LKMISA+QL+KGL+RDEP  +A PLK      +   K++ R L
Sbjct: 578 QTDLRQPDGLKMISAMQLKKGLSRDEPTFMAIPLKSSENSGETVPKEIMRVL 629

HSP 3 Score: 187.6 bits (475), Expect = 3.2e-43
Identity = 97/141 (68.79%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 217 QAHNSTREWKRTADVTQAYLEKASGRMKKRAGKKRRPLEFQAEDWVLIKMRSGQGLFRGR 276
           QA N T+EW++T D+ +AYLEKAS RMKK A KKRRPLEF+A D VLIK+R  Q  FRGR
Sbjct: 65  QALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGR 124

Query: 277 TNQHLARKYGGPVEVLRKVGKTSYRVALPTWMKMHPTIHVSNLKPYHKDPGDTRCNVVSL 336
            +Q L RKY GPVEVL+KVG TSYRVALPTWMK++P IHVSNLKPYH+D  D + NVV+ 
Sbjct: 125 KDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTR 184

Query: 337 PNISLNQKEEDRDVEEILADR 358
           P I L+QK ED+DVEEILA+R
Sbjct: 185 PTIDLSQK-EDKDVEEILAER 204

[Close]

BLAST of PI0011281 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 187.6 bits (475), Expect = 3.2e-43
Identity = 97/141 (68.79%), Postives = 114/141 (80.85%), Query Frame = 0


Query: 217  QAHNSTREWKRTADVTQAYLEKASGRMKKRAGKKRRPLEFQAEDWVLIKMRSGQGLFRGR 276
            QA N T+EW++T D+ +AYLEKAS RMKK A KKRRPLEF+A D VLIK+R  Q  FRGR
Sbjct: 1393 QALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQVLIKLRPEQVRFRGR 1452

Query: 277  TNQHLARKYGGPVEVLRKVGKTSYRVALPTWMKMHPTIHVSNLKPYHKDPGDTRCNVVSL 336
             +Q L RKY GPVEVL+KVG TSYRVALPTWMK++P IHVSNLKPYH+D  D + NVV+ 
Sbjct: 1453 KDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTR 1512

Query: 337  PNISLNQKEEDRDVEEILADR 358
            P I L+QK ED+DVEEILA+R
Sbjct: 1513 PTIDLSQK-EDKDVEEILAER 1532

The following BLAST results are available for this feature:

BLAST of PI0011281 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C8Z6	1.2e-43	67.38	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5D3C8Z6	8.7e-23	46.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5A7SQA2	4.1e-04	51.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5D3C4R1	8.7e-23	46.20	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7UXR6	1.5e-43	68.79	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]

Pages

BLAST of PI0011281 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031721.1	2.4e-43	68.79	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0031721.1	8.4e-04	51.92	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK07955.1	1.8e-22	46.20	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	1.8e-22	46.20	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0037220.1	3.2e-43	68.79	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]

Pages

BLAST of PI0011281 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 415..434
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 142..163
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 364..388
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011281.1	PI0011281.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding