Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCAAATTGATTTTCCCTTTACCTATAAATTGCTTCTCATTTCCTCTAATTTCAACCATCCTCTGTTTCTTCACCCCCTCCTCCTCCGCCCAAACCTCCCTCCACCACCGCCCCGTCATGGCCGATTTCGGCCGAGGAGCCACCGCCGATCTCCACCATCTCCGTCCACTTCCAATTCCCGGTAGTCCACTCGTCGCTTGCCGAATCTGCGATGCTGTGTTTTCCAGTAGCCAAGCCCTAATTAACCACATCGGAGCTCACGTCTCCGACGAAGGCGCCACCTCCAGACGATCACAGAATCAACAACGACGGTTTCCAGCTGGTCCGGCGTTCTTAACGCCGCCAAGAGGGACGGCGGTGTTTCTGCCAAACAGATTTTCATCGCCTAATTCGATAGGTTTTGAGGCGGCGGAATCGGTTCGGGCAAATCAAATGTCTCCATTTGGAAGAAGTGTGTTTAGAGAGGGACTGCCGGCGCCGTATCCTCCGGCGGGCGTCGTCGGTCAGTACTTTACGAATTTGATTGCGATGGAGGAGGCAGGCGGCGATTGTACGAAGCCTTATATAAATCAATTGGAGAAATGTTTGCCGAAAGTGGGCGGCGGAGGTGAAGAAGAGGACGGCCGTCAATTGTATTTAAGCAAAATAGACCTGACCTTGAAGCTGTAAAATGTAGGCAGACAAAAGAAGAATAACCTTTTTCAAATATATATATTAATTTTACCTTTTTCTTAATTTATTTTATAGTATTTTATTTCTAATTAACTTTTATTATTATTATTTGATTTAATTTGGTTTCTATTACAA
mRNA sequence
TTCAAATTGATTTTCCCTTTACCTATAAATTGCTTCTCATTTCCTCTAATTTCAACCATCCTCTGTTTCTTCACCCCCTCCTCCTCCGCCCAAACCTCCCTCCACCACCGCCCCGTCATGGCCGATTTCGGCCGAGGAGCCACCGCCGATCTCCACCATCTCCGTCCACTTCCAATTCCCGGTAGTCCACTCGTCGCTTGCCGAATCTGCGATGCTGTGTTTTCCAGTAGCCAAGCCCTAATTAACCACATCGGAGCTCACGTCTCCGACGAAGGCGCCACCTCCAGACGATCACAGAATCAACAACGACGGTTTCCAGCTGGTCCGGCGTTCTTAACGCCGCCAAGAGGGACGGCGGTGTTTCTGCCAAACAGATTTTCATCGCCTAATTCGATAGGTTTTGAGGCGGCGGAATCGGTTCGGGCAAATCAAATGTCTCCATTTGGAAGAAGTGTGTTTAGAGAGGGACTGCCGGCGCCGTATCCTCCGGCGGGCGTCGTCGGTCAGTACTTTACGAATTTGATTGCGATGGAGGAGGCAGGCGGCGATTGTACGAAGCCTTATATAAATCAATTGGAGAAATGTTTGCCGAAAGTGGGCGGCGGAGGTGAAGAAGAGGACGGCCGTCAATTGTATTTAAGCAAAATAGACCTGACCTTGAAGCTGTAAAATGTAGGCAGACAAAAGAAGAATAACCTTTTTCAAATATATATATTAATTTTACCTTTTTCTTAATTTATTTTATAGTATTTTATTTCTAATTAACTTTTATTATTATTATTTGATTTAATTTGGTTTCTATTACAA
Coding sequence (CDS)
ATGGCCGATTTCGGCCGAGGAGCCACCGCCGATCTCCACCATCTCCGTCCACTTCCAATTCCCGGTAGTCCACTCGTCGCTTGCCGAATCTGCGATGCTGTGTTTTCCAGTAGCCAAGCCCTAATTAACCACATCGGAGCTCACGTCTCCGACGAAGGCGCCACCTCCAGACGATCACAGAATCAACAACGACGGTTTCCAGCTGGTCCGGCGTTCTTAACGCCGCCAAGAGGGACGGCGGTGTTTCTGCCAAACAGATTTTCATCGCCTAATTCGATAGGTTTTGAGGCGGCGGAATCGGTTCGGGCAAATCAAATGTCTCCATTTGGAAGAAGTGTGTTTAGAGAGGGACTGCCGGCGCCGTATCCTCCGGCGGGCGTCGTCGGTCAGTACTTTACGAATTTGATTGCGATGGAGGAGGCAGGCGGCGATTGTACGAAGCCTTATATAAATCAATTGGAGAAATGTTTGCCGAAAGTGGGCGGCGGAGGTGAAGAAGAGGACGGCCGTCAATTGTATTTAAGCAAAATAGACCTGACCTTGAAGCTGTAA
Protein sequence
MADFGRGATADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRSQNQQRRFPAGPAFLTPPRGTAVFLPNRFSSPNSIGFEAAESVRANQMSPFGRSVFREGLPAPYPPAGVVGQYFTNLIAMEEAGGDCTKPYINQLEKCLPKVGGGGEEEDGRQLYLSKIDLTLKL
Homology
BLAST of PI0011181 vs. ExPASy TrEMBL
Match:
A0A5A7U6B7 (C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00040 PE=4 SV=1)
HSP 1 Score: 330.1 bits (845), Expect = 5.9e-87
Identity = 162/185 (87.57%), Postives = 169/185 (91.35%), Query Frame = 0
Query: 1 MADFGRGATADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRSQ 60
MADF RG TADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRSQ
Sbjct: 1 MADFARGTTADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRSQ 60
Query: 61 N-QQRRFPAGPAFLTPPRGTAVFLPNRFSSPNSIGFEAAESVRAN-QMSPFGRSVFREGL 120
+ QQRRFP GPAFLTP R TAVFLPNRFSSPNSIGFE AESV N Q+SPFGRSVFR+G+
Sbjct: 61 DQQQRRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWGNHQISPFGRSVFRDGV 120
Query: 121 PAPYPPAGVVGQYFTNLIAMEEAGGDCTKPYINQLEKCLPKVGGGGEEEDGRQLYLSKID 180
P PYPP G+VGQYFTNLI M+E GGDCTKPYINQLEKCLPKVG GGEE+D RQLYLSKID
Sbjct: 121 PPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGKGGEEDDCRQLYLSKID 180
Query: 181 LTLKL 184
LTLKL
Sbjct: 181 LTLKL 185
BLAST of PI0011181 vs. ExPASy TrEMBL
Match:
A0A0A0LNN3 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 PE=4 SV=1)
HSP 1 Score: 289.7 bits (740), Expect = 8.8e-75
Identity = 143/167 (85.63%), Postives = 149/167 (89.22%), Query Frame = 0
Query: 1 MADFGRGATADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRS- 60
MADF R ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRR
Sbjct: 1 MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPV 60
Query: 61 QNQQRRFPAGPAFLTPPRGTAVFLPNRFSSPNSIGFEAAESVRANQMSPFGRSVFREGLP 120
Q+QQRRFPAGPAFLT PR TAVFLPNR+SSPN IGFE AESV NQ+SPFGRSVFREG+
Sbjct: 61 QDQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSVFREGVA 120
Query: 121 APYPPAGVVGQYFTNLIAMEE-AGGDCTKPYINQLEKCLPKVGGGGE 166
APYPP G++GQYFTNLIAMEE GGDCTKPYINQLEKCLPKV GG E
Sbjct: 121 APYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVKGGTE 167
BLAST of PI0011181 vs. ExPASy TrEMBL
Match:
A0A2N9E7H8 (C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 61/184 (33.15%), Postives = 82/184 (44.57%), Query Frame = 0
Query: 26 VACRICDAVFSSSQALINHIGAHVSDEGATSRRSQN-------QQRRFPAGP-----AFL 85
+ACR+CD VF S+QALINHI +H+ +E ATSR QR A P A
Sbjct: 26 IACRLCDNVFMSTQALINHIESHMGEEEATSRMQHRTNRLPIPSQRDICANPFQPNFALP 85
Query: 86 TPPRGTAVFLPNR------FSSPNSIGFEAAESVRANQ------MSPFGRSVFREGLPAP 145
PPR T NR + P F + + +SP R+ F
Sbjct: 86 IPPRETQQLFENRLPVMQPLAPPERHPFYGLNRMIVPRPTLPPLVSPMARNNF------A 145
Query: 146 YPPAGVVGQYFTNLIAMEEAGGDCTKPYINQLEKCLPKVGGGGEEEDGRQLY--LSKIDL 184
PP ++ +EE GDCTKPY+NQL+ + K+ + D L+K+DL
Sbjct: 146 VPPQFILSAEQAQRRMVEEPSGDCTKPYLNQLDHPIMKLVDVTDSNDDNNSISGLNKLDL 203
BLAST of PI0011181 vs. ExPASy TrEMBL
Match:
A0A2C9W9J2 (C2H2-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G163100 PE=4 SV=1)
HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 64/180 (35.56%), Postives = 83/180 (46.11%), Query Frame = 0
Query: 24 PLVACRICDAVFSSSQALINHIGAHVSDEGATSRRSQN----QQRRF--PAGPAFLTPPR 83
P +ACRIC+ VF SSQALI HI +H++DE SRR QN Q+ F P+ A L P
Sbjct: 19 PPIACRICNHVFMSSQALIEHIESHMADEDPNSRRPQNLISCQRNPFANPSSQASLPP-- 78
Query: 84 GTAVFLPN-------RFSSPNSIGFEAAE---SVRANQMSPFGRSVFREGL--PAPYPPA 143
T F PN F N I + + S+R R P+PP
Sbjct: 79 -TLPFTPNSYSQLASNFQERNPIFSSSPQMIVSMRPTSQPQISLMGVRNSWSHQVPFPP- 138
Query: 144 GVVGQYFTNLIAMEEAGG-DCTKPYINQLEKCLP-KVGGGGEEEDGRQLYLSKIDLTLKL 184
Q ++ ME+ D TKP + QLEK P K+ G ++ L +DLTLKL
Sbjct: 139 ----QLQRKMMMMEDPPSCDFTKPLLQQLEKPFPYKIELKGINDNRNSSDLDMLDLTLKL 190
BLAST of PI0011181 vs. ExPASy TrEMBL
Match:
M5XVD2 (C2H2-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_1G040800 PE=4 SV=1)
HSP 1 Score: 72.0 bits (175), Expect = 2.9e-09
Identity = 63/193 (32.64%), Postives = 87/193 (45.08%), Query Frame = 0
Query: 17 PLPIP-GSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRSQNQQRRFPAGPAFLTP 76
P +P GS +ACRICD VF S+QALINHI +H+ D+G T+ R + ++ P P
Sbjct: 21 PASMPSGSTEIACRICDRVFMSTQALINHIESHIVDDGLTASRLRQLTQQTNTNP----P 80
Query: 77 PRGTAVF-LPNRFSSPNSIGFEAAESVRANQMSPFGRSVFREGLPAPYP---------PA 136
RG F L N F N + P + + + +PY
Sbjct: 81 IRGNPAFPLQNPFHQRNPFHDVHNNQIGFAPPPPHHQYPYPQQQLSPYALPRNVNVNVNQ 140
Query: 137 GVVGQYFTNL---------IAMEE--AGGDCTKPYINQLEKCLPKVGGGGEEEDGR---- 184
GVVG ++ + +A EE DCT P ++QLE+ LP V E D R
Sbjct: 141 GVVGSHYMVMQSANQTAARMASEEDDLSSDCTMPLLSQLERPLPPV---NYELDHRGNIG 200
BLAST of PI0011181 vs. NCBI nr
Match:
KAA0050710.1 (hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa])
HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 162/185 (87.57%), Postives = 169/185 (91.35%), Query Frame = 0
Query: 1 MADFGRGATADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRSQ 60
MADF RG TADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRSQ
Sbjct: 1 MADFARGTTADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRSQ 60
Query: 61 N-QQRRFPAGPAFLTPPRGTAVFLPNRFSSPNSIGFEAAESVRAN-QMSPFGRSVFREGL 120
+ QQRRFP GPAFLTP R TAVFLPNRFSSPNSIGFE AESV N Q+SPFGRSVFR+G+
Sbjct: 61 DQQQRRFPGGPAFLTPARATAVFLPNRFSSPNSIGFEGAESVWGNHQISPFGRSVFRDGV 120
Query: 121 PAPYPPAGVVGQYFTNLIAMEEAGGDCTKPYINQLEKCLPKVGGGGEEEDGRQLYLSKID 180
P PYPP G+VGQYFTNLI M+E GGDCTKPYINQLEKCLPKVG GGEE+D RQLYLSKID
Sbjct: 121 PPPYPPPGMVGQYFTNLIGMDEGGGDCTKPYINQLEKCLPKVGKGGEEDDCRQLYLSKID 180
Query: 181 LTLKL 184
LTLKL
Sbjct: 181 LTLKL 185
BLAST of PI0011181 vs. NCBI nr
Match:
KAE8651808.1 (hypothetical protein Csa_006798 [Cucumis sativus])
HSP 1 Score: 323.9 bits (829), Expect = 8.7e-85
Identity = 160/185 (86.49%), Postives = 167/185 (90.27%), Query Frame = 0
Query: 1 MADFGRGATADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRS- 60
MADF R ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRR
Sbjct: 1 MADFARPTPADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRPV 60
Query: 61 QNQQRRFPAGPAFLTPPRGTAVFLPNRFSSPNSIGFEAAESVRANQMSPFGRSVFREGLP 120
Q+QQRRFPAGPAFLT PR TAVFLPNR+SSPN IGFE AESV NQ+SPFGRSVFREG+
Sbjct: 61 QDQQRRFPAGPAFLTAPRATAVFLPNRYSSPNGIGFEGAESVWGNQISPFGRSVFREGVA 120
Query: 121 APYPPAGVVGQYFTNLIAMEE-AGGDCTKPYINQLEKCLPKVGGGGEEEDGRQLYLSKID 180
APYPP G++GQYFTNLIAMEE GGDCTKPYINQLEKCLPKVG GGEE+D RQLYLSKID
Sbjct: 121 APYPPPGLMGQYFTNLIAMEEGGGGDCTKPYINQLEKCLPKVGNGGEEDDCRQLYLSKID 180
Query: 181 LTLKL 184
LTLKL
Sbjct: 181 LTLKL 185
BLAST of PI0011181 vs. NCBI nr
Match:
KAG6574909.1 (hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 261.2 bits (666), Expect = 6.9e-66
Identity = 139/192 (72.40%), Postives = 154/192 (80.21%), Query Frame = 0
Query: 1 MADFGRGATADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATS---R 60
MA+FGR ADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGA+S
Sbjct: 1 MAEFGRATAADLHHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGASSAAAS 60
Query: 61 RSQNQQR----RFPAGPAFLTPPRGTAVFLPNRFS-SPNSIGFEAAESVRANQMSPFGRS 120
R Q+QQR R P G PPR TA+FLP+R+S PNS+GF+AAES+ NQ+SPF RS
Sbjct: 61 RRQSQQRSQTHRLPPG-----PPRATAMFLPSRYSVPPNSLGFDAAESLWPNQLSPFARS 120
Query: 121 VFREGLPAPYPPAGVVGQYFTNLIAMEEAGGDCTKPYINQLEKCLPKV-GGGGEEEDGRQ 180
+FREG P YPP VGQY TN A EEA GDCTKPYINQLEKCLPKV GGGGEE+DGRQ
Sbjct: 121 LFREG-PPSYPPP--VGQYLTNWNAAEEATGDCTKPYINQLEKCLPKVGGGGGEEDDGRQ 180
Query: 181 LYLSKIDLTLKL 184
LY SK+DL+L+L
Sbjct: 181 LYFSKLDLSLRL 184
BLAST of PI0011181 vs. NCBI nr
Match:
OAY55555.1 (hypothetical protein MANES_03G163100v8 [Manihot esculenta])
HSP 1 Score: 72.8 bits (177), Expect = 3.5e-09
Identity = 64/180 (35.56%), Postives = 83/180 (46.11%), Query Frame = 0
Query: 24 PLVACRICDAVFSSSQALINHIGAHVSDEGATSRRSQN----QQRRF--PAGPAFLTPPR 83
P +ACRIC+ VF SSQALI HI +H++DE SRR QN Q+ F P+ A L P
Sbjct: 19 PPIACRICNHVFMSSQALIEHIESHMADEDPNSRRPQNLISCQRNPFANPSSQASLPP-- 78
Query: 84 GTAVFLPN-------RFSSPNSIGFEAAE---SVRANQMSPFGRSVFREGL--PAPYPPA 143
T F PN F N I + + S+R R P+PP
Sbjct: 79 -TLPFTPNSYSQLASNFQERNPIFSSSPQMIVSMRPTSQPQISLMGVRNSWSHQVPFPP- 138
Query: 144 GVVGQYFTNLIAMEEAGG-DCTKPYINQLEKCLP-KVGGGGEEEDGRQLYLSKIDLTLKL 184
Q ++ ME+ D TKP + QLEK P K+ G ++ L +DLTLKL
Sbjct: 139 ----QLQRKMMMMEDPPSCDFTKPLLQQLEKPFPYKIELKGINDNRNSSDLDMLDLTLKL 190
BLAST of PI0011181 vs. NCBI nr
Match:
KAB8495643.1 (hypothetical protein FH972_025385 [Carpinus fangiana])
HSP 1 Score: 72.0 bits (175), Expect = 5.9e-09
Identity = 60/194 (30.93%), Postives = 83/194 (42.78%), Query Frame = 0
Query: 13 HHLRPLPIPGSPLVACRICDAVFSSSQALINHIGAHVSDEGATSRRSQNQQRRFPAGPAF 72
H R P +ACR+CD VF S+QALINHI +H+++E +T+ Q R
Sbjct: 21 HIARQEPFQSPTQIACRLCDQVFMSTQALINHIESHMAEEESTAASRSRQHR----ATTT 80
Query: 73 LTPPRGTAVF---LPNRFSSPNSIGFEAAESVRANQMSPFGRSVFREGLPAPYP------ 132
P + +F PN + P + + ++ PF V R P P P
Sbjct: 81 RLPSQRDLLFNCSQPNFATHPENRLPLVQRPSQPSERHPF-LCVHRSFAPPPPPTLLPQV 140
Query: 133 -PAGVVGQYFTNLI-----------AMEEAGGDCTKPYINQLEKCLPKVGGGGEEEDGRQ 184
P + LI A EE GDCTKPY++QLE + V + D
Sbjct: 141 SPMARFSSHAPQLILSSPQGQRRVLAPEEPLGDCTKPYLDQLEHPIMVVVQAADRNDENS 200
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U6B7 | 5.9e-87 | 87.57 | C2H2-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... | [more] |
A0A0A0LNN3 | 8.8e-75 | 85.63 | C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G174080 P... | [more] |
A0A2N9E7H8 | 1.8e-11 | 33.15 | C2H2-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2799... | [more] |
A0A2C9W9J2 | 1.7e-09 | 35.56 | C2H2-type domain-containing protein OS=Manihot esculenta OX=3983 GN=MANES_03G163... | [more] |
M5XVD2 | 2.9e-09 | 32.64 | C2H2-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_1G040800 ... | [more] |
Match Name | E-value | Identity | Description | |
KAA0050710.1 | 1.2e-86 | 87.57 | hypothetical protein E6C27_scaffold560G00040 [Cucumis melo var. makuwa] | [more] |
KAE8651808.1 | 8.7e-85 | 86.49 | hypothetical protein Csa_006798 [Cucumis sativus] | [more] |
KAG6574909.1 | 6.9e-66 | 72.40 | hypothetical protein SDJN03_25548, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
OAY55555.1 | 3.5e-09 | 35.56 | hypothetical protein MANES_03G163100v8 [Manihot esculenta] | [more] |
KAB8495643.1 | 5.9e-09 | 30.93 | hypothetical protein FH972_025385 [Carpinus fangiana] | [more] |
Match Name | E-value | Identity | Description | |