PI0011125 (gene) Melon (PI 482460) v1

Overview


Name	PI0011125
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Protein Ycf2-like
Location	chr06: 18565138 .. 18565323 (+)
RNA-Seq Expression	PI0011125
Synteny	PI0011125

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAGATAGGGAAAAACGAATGAGAAGAGTAGATGATAAACCCTATATAGAGGAGAAGCCAGTGACATCGGGAATATGGATAGATGCAACAAGAGGAAAAATGGGACCATCAAACAAAGAGAAAGAAAATTCACCTCCATCACACATGCCGTCATTTGACTTGCATCTGAGTCAAGCTTGA

mRNA sequence

ATGGCAGAAGATAGGGAAAAACGAATGAGAAGAGTAGATGATAAACCCTATATAGAGGAGAAGCCAGTGACATCGGGAATATGGATAGATGCAACAAGAGGAAAAATGGGACCATCAAACAAAGAGAAAGAAAATTCACCTCCATCACACATGCCGTCATTTGACTTGCATCTGAGTCAAGCTTGA

Coding sequence (CDS)

ATGGCAGAAGATAGGGAAAAACGAATGAGAAGAGTAGATGATAAACCCTATATAGAGGAGAAGCCAGTGACATCGGGAATATGGATAGATGCAACAAGAGGAAAAATGGGACCATCAAACAAAGAGAAAGAAAATTCACCTCCATCACACATGCCGTCATTTGACTTGCATCTGAGTCAAGCTTGA

Protein sequence

MAEDREKRMRRVDDKPYIEEKPVTSGIWIDATRGKMGPSNKEKENSPPSHMPSFDLHLSQA

Homology

[Close]

BLAST of PI0011125 vs. ExPASy TrEMBL
Match: A0A5A7SVZ4 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00830 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.6e-09
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   MAEDREKRMRRVDDKPYIEEKPVTSGIWIDATRGKMGPSNKEKENS 47
           M ED+E+RM+R +DK Y E KPV++GIWID  RGK+GPSNKEKENS
Sbjct: 131 MVEDKEQRMKRSNDKSYREVKPVSTGIWIDVVRGKVGPSNKEKENS 176

[Close]

BLAST of PI0011125 vs. ExPASy TrEMBL
Match: A0A5A7TZZ0 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G001330 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-07
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 9   MRRVDDKPYIEEKPVTSGIWIDATRGKMGPSNKEKENSPPSHMPSFDLHLSQA 62
           M+R + K Y E  PV++GIWIDA RGK+ P  K+KENS  S  PSFDLHLSQA
Sbjct: 416 MKRSNAKEYREVTPVSTGIWIDALRGKVVPPRKDKENS-SSEWPSFDLHLSQA 467

[Close]

BLAST of PI0011125 vs. ExPASy TrEMBL
Match: A0A5A7SWP9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00260 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.8e-07
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 8   RMRRVDDKPYIEEKPVTSGIWIDATRGKMGPSNKEKENSPPSHMPSFDLHLSQA 62
           RM+R + K Y E  PV++GIWIDA RGK+    K+KENS  S  PSFDLHLSQA
Sbjct: 466 RMKRSNAKEYREVTPVSTGIWIDALRGKVVEPRKDKENS-SSEWPSFDLHLSQA 518

[Close]

BLAST of PI0011125 vs. ExPASy TrEMBL
Match: A0A5A7SN41 (DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001540 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.8e-07
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 8   RMRRVDDKPYIEEKPVTSGIWIDATRGKMGPSNKEKENSPPSHMPSFDLHLSQA 62
           RM+R + K Y E  PV++GIWIDA RGK+    K+KENS  S  PSFDLHLSQA
Sbjct: 535 RMKRSNAKEYREVTPVSTGIWIDALRGKVVEPRKDKENS-SSEWPSFDLHLSQA 587

[Close]

BLAST of PI0011125 vs. ExPASy TrEMBL
Match: A0A5A7U047 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00640 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.2e-06
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 0


Query: 9   MRRVDDKPYIEEKPVTSGIWIDATRGKMGPSNKEKENSPPSHMPSFDLHLSQA 62
           M+R + K Y E  PV++GIWIDA RGK+    K+KENS  S  PSFDLHLSQA
Sbjct: 744 MKRSNAKEYREVTPVSTGIWIDALRGKVVEPRKDKENS-SSEWPSFDLHLSQA 795

[Close]

BLAST of PI0011125 vs. NCBI nr
Match: KAA0033325.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK21581.1 protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 3.4e-09
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 0


Query: 1   MAEDREKRMRRVDDKPYIEEKPVTSGIWIDATRGKMGPSNKEKENS 47
           M ED+E+RM+R +DK Y E KPV++GIWID  RGK+GPSNKEKENS
Sbjct: 131 MVEDKEQRMKRSNDKSYREVKPVSTGIWIDVVRGKVGPSNKEKENS 176

[Close]

BLAST of PI0011125 vs. NCBI nr
Match: KAA0048518.1 (protein Ycf2-like [Cucumis melo var. makuwa] >TYK28309.1 protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 5.4e-07
Identity = 33/53 (62.26%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 9   MRRVDDKPYIEEKPVTSGIWIDATRGKMGPSNKEKENSPPSHMPSFDLHLSQA 62
           M+R + K Y E  PV++GIWIDA RGK+ P  K+KENS  S  PSFDLHLSQA
Sbjct: 416 MKRSNAKEYREVTPVSTGIWIDALRGKVVPPRKDKENS-SSEWPSFDLHLSQA 467

[Close]

BLAST of PI0011125 vs. NCBI nr
Match: KAA0035754.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 8   RMRRVDDKPYIEEKPVTSGIWIDATRGKMGPSNKEKENSPPSHMPSFDLHLSQA 62
           RM+R + K Y E  PV++GIWIDA RGK+    K+KENS  S  PSFDLHLSQA
Sbjct: 466 RMKRSNAKEYREVTPVSTGIWIDALRGKVVEPRKDKENS-SSEWPSFDLHLSQA 518

[Close]

BLAST of PI0011125 vs. NCBI nr
Match: KAA0025875.1 (uncharacterized protein E6C27_scaffold34G001540 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.2e-06
Identity = 33/54 (61.11%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 8   RMRRVDDKPYIEEKPVTSGIWIDATRGKMGPSNKEKENSPPSHMPSFDLHLSQA 62
           RM+R + K Y E  PV++GIWIDA RGK+    K+KENS  S  PSFDLHLSQA
Sbjct: 535 RMKRSNAKEYREVTPVSTGIWIDALRGKVVEPRKDKENS-SSEWPSFDLHLSQA 587

[Close]

BLAST of PI0011125 vs. NCBI nr
Match: KAA0035574.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 4.6e-06
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 0


Query: 8    RMRRVDDKPYIEEKPVTSGIWIDATRGKMGPSNKEKENSPPSHMPSFDLHLSQA 62
            RM+ ++ K Y E  PV++ IWIDA RGK+ P  K+KENS  S  PSFDLHLSQA
Sbjct: 1812 RMKILNAKEYREVTPVSTEIWIDALRGKVIPQGKDKENS-SSEWPSFDLHLSQA 1864

The following BLAST results are available for this feature:

BLAST of PI0011125 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011125 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVZ4	1.6e-09	69.57	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00...	[more]
A0A5A7TZZ0	2.6e-07	62.26	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00...	[more]
A0A5A7SWP9	5.8e-07	61.11	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold403G00...	[more]
A0A5A7SN41	5.8e-07	61.11	DUF1985 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U047	2.2e-06	60.38	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00...	[more]

BLAST of PI0011125 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033325.1	3.4e-09	69.57	protein Ycf2-like [Cucumis melo var. makuwa] >TYK21581.1 protein Ycf2-like [Cucu...	[more]
KAA0048518.1	5.4e-07	62.26	protein Ycf2-like [Cucumis melo var. makuwa] >TYK28309.1 protein Ycf2-like [Cucu...	[more]
KAA0035754.1	1.2e-06	61.11	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0025875.1	1.2e-06	61.11	uncharacterized protein E6C27_scaffold34G001540 [Cucumis melo var. makuwa]	[more]
KAA0035574.1	4.6e-06	59.26	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0011125 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011125.1	PI0011125.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding
molecular_function	GO:0004518	nuclease activity
molecular_function	GO:0016779	nucleotidyltransferase activity