PI0011109 (gene) Melon (PI 482460) v1

Overview


Name	PI0011109
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Elongation factor
Location	chr07: 22829636 .. 22831080 (+)
RNA-Seq Expression	PI0011109
Synteny	PI0011109

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGATGCTAAAATTAGGTTAATATAGTTTTTAATTACTGAATAAAATATAAAGAATGATTTTATTTAAAAATAAATATTATAAGTAACTCATGTATTCATAACAAGTAATTAAAAAACAAAAATATCTTTTTACTAAGCTGCAGAGTGAGTGCCACGTAGTAGCACTGTCCTGAGTACACGAGAATCGTCCAGGGCCCACAATGTAGAACAATGAGCGTGAGCATCACGCGAAGGTTTAGAAGGACCGTGATTACACGCGCCTCAACTTTAAATGAAAACGTCCTGAATTTACGAAGTTTTGTAACGGAACGGAGAGTAACGTGTGGTCCACGAAGCGATAAAAAGGAAACAACGTTTTCAAAAAAGAAATTTGATAAGCCAGTAAGAAAGTCCCACGTGGCGGGAAAGAGCAAAATCTGAATGAAAGAGGCCGTCATGATCAACGCAACGGTCACATAGGAATCGGTGAAAGGCGGAACTGTAGAATGAGATTGGGCGGAAAGCGGTTAATATTTTCGAATTACGTTCCACTGTTTGCTAACAATACTCTTTAGAGAAGGGAGACGAGAGAGCGAGTTTCGCCAAGTTGCCTTCTACTTTCCTCATGATTATCAGTTTTAAATTTTGTTAATTATCTATTTCTCTTGATTTTGTTTTCCATTTTGATCTAATTTTGTTTCGTGTTCGTTGGTGTTTCAGGTGAATTTTCTGTTTGTTCAGATTTAAGATCTTAGCGTTGCTTCTCTCTTTAATCTCTTCTCTCACTGGAGTAGAAGCAGAGAACCCCAAAATGGAATGGTGGAACAAGATGAGTACTCCCTTGCGAAGTTTTACCTTCAGAGTCGCCTCTCGTCTTGGATTTCGCAAACGCGGTAAACCACTTCTTTACATAAATCTGAGAATATAAAACAATTAGGATTCTCAATCTCAAATTCAGATTTGTTCGTTTTTGGTTGAATTGGGGATTTTATGAAATGAATTAGGGCTAGTGAAACTGGGGCGAGATGTGAAGGCATGTGAATACGAGGACGTGCACGTGATGTGGGAGATGCTGAAGAGAAACGAAACGGATCAACTAATTGGATCGTCGGAAAGGCACCGGAAAAGGAGATCGCTATGGAATATATTTTGGTGGGCTCGATCAGCTCCATGCATTGGCGGCAGAATCTGAACAATCAATCAGCAATCACCACTATTTGGTATAAATCAACACCATAAATTTGGGTCATATGGTAACCAGGTAATGAATCAGAAGAAAAAAAAACATCTATCCAAATATCAGCTATGTTACTAGTTTGTTAGAAAAAATAGTCCCCTACTACTGCATAATAGATACAAAACTGATTACCTAATTTTGATCCCATCAAGGCCCCCTCTCTTCTCTCCTTGCTTTTCTTATCTTTATATCTATTAAAATAATAAAAAACTAATTTGTTCTTATTT

mRNA sequence

GTAGATGCTAAAATTAGGTTAATATAGTTTTTAATTACTGAATAAAATATAAAGAATGATTTTATTTAAAAATAAATATTATAAGTAACTCATGTATTCATAACAAGTAATTAAAAAACAAAAATATCTTTTTACTAAGCTGCAGAGTGAGTGCCACGTAGTAGCACTGTCCTGAGTACACGAGAATCGTCCAGGGCCCACAATGTAGAACAATGAGCGTGAGCATCACGCGAAGGTTTAGAAGGACCGTGATTACACGCGCCTCAACTTTAAATGAAAACGTCCTGAATTTACGAAGTTTTGTAACGGAACGGAGAGTAACGTGTGGTCCACGAAGCGATAAAAAGGAAACAACGTTTTCAAAAAAGAAATTTGATAAGCCAGTAAGAAAGTCCCACGTGGCGGGAAAGAGCAAAATCTGAATGAAAGAGGCCGTCATGATCAACGCAACGGTCACATAGGAATCGGTGAAAGGCGGAACTGTAGAATGAGATTGGGCGGAAAGCGGTTAATATTTTCGAATTACGTTCCACTGTTTGCTAACAATACTCTTTAGAGAAGGGAGACGAGAGAGCGAGTTTCGCCAAGTGAATTTTCTGTTTGTTCAGATTTAAGATCTTAGCGTTGCTTCTCTCTTTAATCTCTTCTCTCACTGGAGTAGAAGCAGAGAACCCCAAAATGGAATGGTGGAACAAGATGAGTACTCCCTTGCGAAGTTTTACCTTCAGAGTCGCCTCTCGTCTTGGATTTCGCAAACGCGGGCTAGTGAAACTGGGGCGAGATGTGAAGGCATGTGAATACGAGGACGTGCACGTGATGTGGGAGATGCTGAAGAGAAACGAAACGGATCAACTAATTGGATCGTCGGAAAGGCACCGGAAAAGGAGATCGCTATGGAATATATTTTGGTGGGCTCGATCAGCTCCATGCATTGGCGGCAGAATCTGAACAATCAATCAGCAATCACCACTATTTGGTATAAATCAACACCATAAATTTGGGTCATATGGTAACCAGGTAATGAATCAGAAGAAAAAAAAACATCTATCCAAATATCAGCTATGTTACTAGTTTGTTAGAAAAAATAGTCCCCTACTACTGCATAATAGATACAAAACTGATTACCTAATTTTGATCCCATCAAGGCCCCCTCTCTTCTCTCCTTGCTTTTCTTATCTTTATATCTATTAAAATAATAAAAAACTAATTTGTTCTTATTT

Coding sequence (CDS)

ATGGAATGGTGGAACAAGATGAGTACTCCCTTGCGAAGTTTTACCTTCAGAGTCGCCTCTCGTCTTGGATTTCGCAAACGCGGGCTAGTGAAACTGGGGCGAGATGTGAAGGCATGTGAATACGAGGACGTGCACGTGATGTGGGAGATGCTGAAGAGAAACGAAACGGATCAACTAATTGGATCGTCGGAAAGGCACCGGAAAAGGAGATCGCTATGGAATATATTTTGGTGGGCTCGATCAGCTCCATGCATTGGCGGCAGAATCTGA

Protein sequence

MEWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLIGSSERHRKRRSLWNIFWWARSAPCIGGRI

Homology

[Close]

BLAST of PI0011109 vs. ExPASy TrEMBL
Match: A0A0A0L522 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642370 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.2e-40
Identity = 79/86 (91.86%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 1  MEWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          MEWW KMS PLRSFTFRVA RLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI
Sbjct: 1  MEWWIKMSAPLRSFTFRVACRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60

Query: 61 GSSERHRKRRSLWNIFWWARSAPCIG 87
          GSSER +KR+SLWNIFWWARSAPC+G
Sbjct: 61 GSSERRQKRKSLWNIFWWARSAPCLG 86

[Close]

BLAST of PI0011109 vs. ExPASy TrEMBL
Match: A0A7N2RF01 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.1e-21
Identity = 49/85 (57.65%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 1  MEWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          MEWW+K+  P+R     VA+RLG RK GL+KL  DV  CEYEDV VMWEMLKR+ET+Q++
Sbjct: 3  MEWWDKVKIPIRRVWIGVATRLGIRKSGLLKLRHDVSTCEYEDVRVMWEMLKRSETEQVV 62

Query: 61 GSSERHRKRRSLWNIFWWARSAPCI 86
                 K+RS WNIF WAR  PC+
Sbjct: 63 PEKS---KKRSFWNIFDWARCTPCL 84

[Close]

BLAST of PI0011109 vs. ExPASy TrEMBL
Match: A0A218WD46 (uncharacterized protein LOC116215154 OS=Punica granatum OX=22663 GN=LOC116215154 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.2e-18
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 0


Query: 1  MEWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          ++ W+KM  PLR+    VA+RLG R RGL+KL +DV+ CEY+DVHVMW MLK+NET+   
Sbjct: 3  LDCWDKMRVPLRNLWIDVATRLGVRNRGLLKLRQDVRRCEYDDVHVMWNMLKKNETEAAA 62

Query: 61 GSSERHRKRRSLWNIFWWARSAP 84
           S +R RK+RS W+ F WAR AP
Sbjct: 63 LSPKR-RKKRSFWSFFDWARCAP 84

[Close]

BLAST of PI0011109 vs. ExPASy TrEMBL
Match: A0A2C9U1C8 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G044800 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.8e-18
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1  MEWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          MEWW+K+  P++     VA R+G RKRGL+KL  DV+ACEYEDV VMWEMLKRNET+   
Sbjct: 1  MEWWDKVIHPVQRVWKGVALRIGIRKRGLLKLHHDVRACEYEDVRVMWEMLKRNETENAK 60

Query: 61 GSSERHRKRRSLWNIFWWARSAPCIG 87
           S +  +K+R LW+ F WAR  P  G
Sbjct: 61 LSGK--KKKRCLWDCFSWARCTPYFG 84

[Close]

BLAST of PI0011109 vs. ExPASy TrEMBL
Match: A0A2C9U1E6 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G044800 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.8e-18
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 1   MEWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
           MEWW+K+  P++     VA R+G RKRGL+KL  DV+ACEYEDV VMWEMLKRNET+   
Sbjct: 30  MEWWDKVIHPVQRVWKGVALRIGIRKRGLLKLHHDVRACEYEDVRVMWEMLKRNETENAK 89

Query: 61  GSSERHRKRRSLWNIFWWARSAPCIG 87
            S +  +K+R LW+ F WAR  P  G
Sbjct: 90  LSGK--KKKRCLWDCFSWARCTPYFG 113

[Close]

BLAST of PI0011109 vs. NCBI nr
Match: KAG6608437.1 (hypothetical protein SDJN03_01779, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 67/88 (76.14%), Postives = 76/88 (86.36%), Query Frame = 0


Query: 1   MEWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
           MEWW K+++PLR FT RVASRLG+RKRGL+KLGRDVKACEYEDVHVMWEMLKRNET+ + 
Sbjct: 69  MEWWIKVASPLRRFTSRVASRLGYRKRGLLKLGRDVKACEYEDVHVMWEMLKRNETEAVG 128

Query: 61  GSSERHRKRRSLWNIFWWARSAPCIGGR 89
               R RK+R +WNIFWWARSAPCIG R
Sbjct: 129 IPEGRRRKKRPIWNIFWWARSAPCIGCR 156

[Close]

BLAST of PI0011109 vs. NCBI nr
Match: KAG7024293.1 (hypothetical protein SDJN02_13107, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.9 bits (333), Expect = 1.4e-27
Identity = 60/88 (68.18%), Postives = 72/88 (81.82%), Query Frame = 0


Query: 1   MEWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
           M WW++M++PLR F+FR+ASRLGFRKRGL+KLGRDV+ACEY DV VMWEM+KRNE  +++
Sbjct: 48  MGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNE-KEVV 107

Query: 61  GSSERHRKRRSLWNIFWWARSAPCIGGR 89
           G  ER RKRRSL NI WW  S  CIG R
Sbjct: 108 GVQERRRKRRSLLNILWWGGSGACIGCR 134

[Close]

BLAST of PI0011109 vs. NCBI nr
Match: KAG6591414.1 (hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 124.4 bits (311), Expect = 4.9e-25
Identity = 56/81 (69.14%), Postives = 68/81 (83.95%), Query Frame = 0


Query: 1   MEWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
           M WW++M++PLR F+FR+ASRLGFRKRGL+KLGRDV+ACEY DV VMWEM+KRNE  +++
Sbjct: 23  MGWWSRMTSPLRRFSFRIASRLGFRKRGLLKLGRDVRACEYGDVQVMWEMVKRNE-KEVV 82

Query: 61  GSSERHRKRRSLWNIFWWARS 82
           G  ER RKRRSL NI WW  S
Sbjct: 83  GVQERRRKRRSLLNILWWGGS 102

[Close]

BLAST of PI0011109 vs. NCBI nr
Match: KAF7819640.1 (elongation factor [Senna tora])

HSP 1 Score: 108.2 bits (269), Expect = 3.6e-20
Identity = 49/85 (57.65%), Postives = 62/85 (72.94%), Query Frame = 0


Query: 1  MEWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          ME W K+  P+RS   RVA+RLG RK GL+KL  DV+ACEY+D+HVMW ML+RN  D + 
Sbjct: 1  MELWRKLMYPMRSVWIRVATRLGIRKTGLLKLRHDVRACEYKDIHVMWGMLERN--DSVF 60

Query: 61 GSSERHRKRRSLWNIFWWARSAPCI 86
           S E+ +KRR+ W +F WAR APCI
Sbjct: 61 ASPEKGKKRRNYWKLFRWARCAPCI 83

[Close]

BLAST of PI0011109 vs. NCBI nr
Match: KAF3975031.1 (hypothetical protein CMV_001685 [Castanea mollissima])

HSP 1 Score: 102.4 bits (254), Expect = 2.0e-18
Identity = 48/83 (57.83%), Postives = 56/83 (67.47%), Query Frame = 0


Query: 1  MEWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLI 60
          MEWW K+  P+R     VA+RLG RK GL+KL  DV  CEYEDV VMWEMLKR+ET+Q+I
Sbjct: 1  MEWWYKVKIPIRRVWIGVATRLGIRKSGLLKLRHDVSTCEYEDVRVMWEMLKRSETEQVI 60

Query: 61 GSSERHRKRRSLWNIFWWARSAP 84
                 K+RS WNIF WA   P
Sbjct: 61 PEKS---KKRSFWNIFEWASCTP 80

[Close]

BLAST of PI0011109 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 74.3 bits (181), Expect = 5.4e-14
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 2  EWWNKMSTPLRSFTFRVASRLGFRKRGLVKLGRDVKACEYEDVHVMWEMLKRNETDQLIG 61
          EWWN M+ P R    R   R+GFR  GL++L  DV +CEYED+H+MW +L +NE    + 
Sbjct: 8  EWWNTMAFPTRRIWNRFTVRVGFRHSGLLRLEHDVSSCEYEDIHIMWNLLHKNEDLTRVP 67

Query: 62 SSERHRKRRS-LWNI 76
            ++ ++R+   WN+
Sbjct: 68 IQQQQQQRKKPCWNL 82

The following BLAST results are available for this feature:

BLAST of PI0011109 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011109 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L522	1.2e-40	91.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G642370 PE=4 SV=1	[more]
A0A7N2RF01	6.1e-21	57.65	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A218WD46	2.2e-18	56.63	uncharacterized protein LOC116215154 OS=Punica granatum OX=22663 GN=LOC116215154...	[more]
A0A2C9U1C8	2.8e-18	55.81	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G044800 PE=4 SV=...	[more]
A0A2C9U1E6	2.8e-18	55.81	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_18G044800 PE=4 SV=...	[more]

BLAST of PI0011109 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6608437.1	1.1e-32	76.14	hypothetical protein SDJN03_01779, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7024293.1	1.4e-27	68.18	hypothetical protein SDJN02_13107, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6591414.1	4.9e-25	69.14	hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAF7819640.1	3.6e-20	57.65	elongation factor [Senna tora]	[more]
KAF3975031.1	2.0e-18	57.83	hypothetical protein CMV_001685 [Castanea mollissima]	[more]

BLAST of PI0011109 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43150.1	5.4e-14	41.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 1..84
None	No IPR available	PANTHER	PTHR33181:SF4	EXPRESSED PROTEIN	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011109.2	PI0011109.2	mRNA