PI0011078 (gene) Melon (PI 482460) v1

Overview


Name	PI0011078
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr03: 26162033 .. 26163149 (-)
RNA-Seq Expression	PI0011078
Synteny	PI0011078

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCGTCAATCAAATGACCTTGAAACCACCTGACAAGGAAGCTAGTGAATTAAGCAGAGAGAAAGAAGAAACAGAAGTTGGAGGATAGAGTTCCAAACTGAGCAAAAAAAACAAACGGTAACAAGTAGAAATGGGAGATGACAGAGAAGAACGAGGAAAGCTCGGATGATTTTACTGGAGCAAAGGCAGAGTAGAGGAATGAAGAAGAATCGGAAAAACCACCGAATTCGGAAAGTTAGAGTCTTGGGTGGCGCGGCGGCCGAAAGGGACGGACAAATTGGCGGGGCTTGTTTGCAGATGCTTTGGCCGGACAGTCCACTAGAGGATACCTCCTCTAGTCCTCTCTTTATTTTCTGCTCCGTTTCTCTCTACTCTTCAAATACTGCATTTGGAATTTGGAAATTGGAATTTTAACTTTGTTCGTTTCGTGATCAGAAATTGTTTTAGAAAACAAAAACTAATTTTTCGGGTTTAGTTTCCATTTAAAATTTTGACGTAAAAAATTTTTAATTTATGTTTCCCTGTAAATTTAAAAATACAATAGTACAGTCTAGATTCATAATTTCTAAAAATAAACATAAATTTTAAAAATAAAAAAACCGATAATTTATTGTTTTTAAAATTAACTATTTTAAGTGTTTTTAAAAATTAATTAAGTATATCAAACATATATTTTAATAGCTTTTCTTGTATTTTATTTCTTTTGTAAAAACCGTCTCTAAATACAATTGTATCTATAATTATATCCTTAAACTTTTAAAATTTAAAATTAAGTCCACAAGCTTATCTAAATTATAAAATTAAACTCTCAAATTTAGATTTGAAAATTTAATTTTTAATATTTATAGGTCCAAATTTAGTACTGGTCCAATTATTCACTAATACTAATAAAAATTGAAGAGTGCAAGAGTAACTCATTCACCCATGTGGTTTTTGCAATTAGTACTATTCTCTGCTATTCCAATAATTCAAACCACAGCATAGTAGAGTACTATTGCAAGAGCACAAGCGCCGAGAAAAATAGACTTAGATGTAGTAATGGGCTTAGGCCTAAGTTCGGGATTCGTAATGGGCTTAGATATAGGCTTGAAATTGGACCTGGGTACGGGCTTTGA

mRNA sequence

ATGTCCGTCAATCAAATGACCTTGAAACCACCTGACAAGGAAGCTAGTGAATTAAGCAGAGAGAAAGAAGAAACAGAACAAAGGCAGAGTAGAGGAATGAAGAAGAATCGGAAAAACCACCGAATTCGGAAAGTTAGAGTCTTGGGTGGCGCGGCGGCCGAAAGGGACGGACAAATTGGCGGGGCTTGTTTGCAGATGCTTTGGCCGGACAGTCCACTAGAGGATACCTCCTCTAGTCCTCTCTTTATTTTCTGCTCCTACTATTGCAAGAGCACAAGCGCCGAGAAAAATAGACTTAGATGTAGTAATGGGCTTAGGCCTAAGTTCGGGATTCGTAATGGGCTTAGATATAGGCTTGAAATTGGACCTGGGTACGGGCTTTGA

Coding sequence (CDS)

ATGTCCGTCAATCAAATGACCTTGAAACCACCTGACAAGGAAGCTAGTGAATTAAGCAGAGAGAAAGAAGAAACAGAACAAAGGCAGAGTAGAGGAATGAAGAAGAATCGGAAAAACCACCGAATTCGGAAAGTTAGAGTCTTGGGTGGCGCGGCGGCCGAAAGGGACGGACAAATTGGCGGGGCTTGTTTGCAGATGCTTTGGCCGGACAGTCCACTAGAGGATACCTCCTCTAGTCCTCTCTTTATTTTCTGCTCCTACTATTGCAAGAGCACAAGCGCCGAGAAAAATAGACTTAGATGTAGTAATGGGCTTAGGCCTAAGTTCGGGATTCGTAATGGGCTTAGATATAGGCTTGAAATTGGACCTGGGTACGGGCTTTGA

Protein sequence

MSVNQMTLKPPDKEASELSREKEETEQRQSRGMKKNRKNHRIRKVRVLGGAAAERDGQIGGACLQMLWPDSPLEDTSSSPLFIFCSYYCKSTSAEKNRLRCSNGLRPKFGIRNGLRYRLEIGPGYGL

Homology

[Close]

BLAST of PI0011078 vs. ExPASy TrEMBL
Match: A0A0A0LQL4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401320 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.3e-29
Identity = 81/109 (74.31%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MSVNQMTLKPPDKEASELSREKEETE------------QRQSRGMKKNRKNHRIRKVRVL 60
           M  NQ TLKPPDKEASELSRE+EETE             RQ+RGMKKNRKNHRIRKVRVL
Sbjct: 1   MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL 60

Query: 61  GGAAAERDGQIGGACLQMLWPDSPLEDTSSSPLFIFCSYYCKSTSAEKN 98
           GGAAAERD QIGG CLQMLWPDSPLEDTSSSPLFI    + KS  AEKN
Sbjct: 61  GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILL-IWNKSPGAEKN 108

[Close]

BLAST of PI0011078 vs. NCBI nr
Match: KGN63072.1 (hypothetical protein Csa_022309 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 2.8e-29
Identity = 81/109 (74.31%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 1   MSVNQMTLKPPDKEASELSREKEETE------------QRQSRGMKKNRKNHRIRKVRVL 60
           M  NQ TLKPPDKEASELSRE+EETE             RQ+RGMKKNRKNHRIRKVRVL
Sbjct: 1   MPGNQKTLKPPDKEASELSREEEETEFGAKSSELSKKLNRQTRGMKKNRKNHRIRKVRVL 60

Query: 61  GGAAAERDGQIGGACLQMLWPDSPLEDTSSSPLFIFCSYYCKSTSAEKN 98
           GGAAAERD QIGG CLQMLWPDSPLEDTSSSPLFI    + KS  AEKN
Sbjct: 61  GGAAAERDEQIGGDCLQMLWPDSPLEDTSSSPLFILL-IWNKSPGAEKN 108

The following BLAST results are available for this feature:

BLAST of PI0011078 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011078 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQL4	1.3e-29	74.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G401320 PE=4 SV=1	[more]

BLAST of PI0011078 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN63072.1	2.8e-29	74.31	hypothetical protein Csa_022309 [Cucumis sativus]	[more]

BLAST of PI0011078 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0011078.1	PI0011078.1	mRNA