PI0011056 (gene) Melon (PI 482460) v1

Overview
NamePI0011056
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionTransforming growth factor-beta receptor-associated protein 1 isoform X1
Locationchr05: 7254360 .. 7256114 (-)
RNA-Seq ExpressionPI0011056
SyntenyPI0011056
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTCGGTTCAACCTTTGTTTGCAAAAATATTGATGCTGCAAAAAAGGTATGCTAATTTAGTGCCCATGTTGAAAGGGAAACGTCAATATTCTTTTCACCTCTTATTTCTTTCTGTTACTTATATTGAGAATATCCTCAGTTTCGCGCTTCCAAAAGCACGATTTGTTCGTCTAGCGTCGTCAGGCTCAATTCAATATGAGTTCAATCCGGTCAATCCAATCGAGCCGACGATTACTCTTTCGAGACTGACTCTTTCTTAGGAGCTTTCTTCATTCTCTGGTCTGAACCCTGGAGGGCGGCAACCCGGTAACTGAACCCCCTAGGGCAACTGCCTTAGAGTTGGGAGAGAGAGCATCCTTTCTCACTCGTCGTGTGATAAGGATCCTGGTAGAAAAAGGCTTCAGCAAGGAGTTCGTCAATATTCTTTTCACCGCTCTGTGGGTATCCTTTTCACCTTTCCTTATTTAAAAGATAATGACTTTACAACCTACAACGATTAACTTTTTATGATTGTAAAGAAAGACGGAATGATATGGATTTGAATCTTTCGTCTAGTTTATCTAAAACTGCTACGATCCCACTACGCTGTTCTTAAAGTCAACAATAAGTTTTCTTATTGTAGCCTTTTTTTAATTTATTAAGCTGCATGTTGCTTTTAATAAGTTTTCTTATTGTAGCATTTTTGTTATTTATTATGTTGAACGATAATAGCATATTTGTCTTCAAGCTTTCATTGCTAAGAATCTAAAATGTTTTCAAAATTTGAACTCAGCTTGTTGGATATTAAGCAACAATCTACTTGACAGGGGTGGTGGCCAATTCGTTTGGTTAAGATTTAGACGATAATGTTGCTCTAAATTCTTTTTGGATTAAATTTGAGTGTTTTATTATCTAAGTTTCATTTGTAGTTTTGTCTAACTTTTAGTTTAGAGTTTTCTTTGATATATTCTTAATATTTGTTGTGATACATGTTTACATTGTTACTAATTCTTACTAATGTCGCAACTTAATTATATTGTAGGTAAATTTGATGCCTTAGAAGTGCCTTTTGGAGTCACAAGCTACATTTAAATTAAACACTTATCTTGTTCAAAATAACTCCCGATGGGGATTTTCTAACTACGCTTCTGACAATACCGACGGCGTCGGGAGAGGATCTCCCGACGCATTTTTGGCCATTTCCTGACGATTATAGGCATCGGGAGATCACCTTTTTCTTGTAGTGTGGGGTGTTTGTAATTGCAGAAACCTTCTTAAGCAAAGTGGCAGTGCCCTAGAGCGCAATATTTTGCTAAACAAGATCTCTTTTCACGTAGAGGAGTTTGTTGGTGTTGATGGGGATGGCCAGGCATCGTTGAGGAGGGAGAGCCCAAGGAGTCATGAGGTGTGGATGTTGCCTGATGCTAGATTTTGGAAGTTTAACCCTAATGCCCTTTGTGGAACGATGTTGAGGAGGTTAGGTGGCATTAGTTGGGTTGTCCATGACTCTACTAGATCTCTCATCCTCGCTAGTTGTGAGAGAGTTGGGTTCAAGTGGCCCGTGGAGGTTCTTGAGACTTTGGCTATGGTTAGAGGTTTGTTTGTGTTATTTTTTTTAGCATGGGTCTCTTCCTCATGTGGTTGTGGAGTCTGATTTTGCTAATCTTATTAAAGTCATTAAGCATAAGTCTTTGGTTCTGTCAGATCAGTTCTCGAACTTTGTTGCTGAGGTGGAGTTGTTGGTTGTGTATGTCCATGTTTCTTTTGACTAG

mRNA sequence

ATGTTTTCGGTTCAACCTTTGTTTGCAAAAATATTGATGCTGCAAAAAAGTTTCGCGCTTCCAAAAGCACGATTTGTTCGTCTAGCGTCGTCAGGCTCAATTCAATATGAGTTCAATCCGGGCGGCAACCCGGTAACTGAACCCCCTAGGGCAACTGCCTTAGAGTTGGGAGAGAGAGCATCCTTTCTCACTCGTCGTGTGATAAGGATCCTGGTAGAAAAAGGCTTCAGCAAGGAGTTCGTCAATATTCTTTTCACCGCTCTAAACCTTCTTAAGCAAAGTGGCAGTGCCCTAGAGCGCAATATTTTGCTAAACAAGATCTCTTTTCACGTAGAGGAGTTTGTTGGTGTTGATGGGGATGGCCAGGCATCGTTGAGGAGGGAGAGCCCAAGGAGTCATGAGGTGTGGATGTTGCCTGATGCTAGATTTTGGAAGTTTAACCCTAATGCCCTTTGTGGAACGATGTTGAGGAGGTTAGGTGGCATTAGTTGGGTTGTCCATGACTCTACTAGATCTCTCATCCTCGCTAGTTGTGAGAGAGTTGGGTTCAAGTGGCCCGTGGAGGTTCTTGAGACTTTGGCTATGGTTAGAGATCAGTTCTCGAACTTTGTTGCTGAGGTGGAGTTGTTGGTTGTGTATGTCCATGTTTCTTTTGACTAG

Coding sequence (CDS)

ATGTTTTCGGTTCAACCTTTGTTTGCAAAAATATTGATGCTGCAAAAAAGTTTCGCGCTTCCAAAAGCACGATTTGTTCGTCTAGCGTCGTCAGGCTCAATTCAATATGAGTTCAATCCGGGCGGCAACCCGGTAACTGAACCCCCTAGGGCAACTGCCTTAGAGTTGGGAGAGAGAGCATCCTTTCTCACTCGTCGTGTGATAAGGATCCTGGTAGAAAAAGGCTTCAGCAAGGAGTTCGTCAATATTCTTTTCACCGCTCTAAACCTTCTTAAGCAAAGTGGCAGTGCCCTAGAGCGCAATATTTTGCTAAACAAGATCTCTTTTCACGTAGAGGAGTTTGTTGGTGTTGATGGGGATGGCCAGGCATCGTTGAGGAGGGAGAGCCCAAGGAGTCATGAGGTGTGGATGTTGCCTGATGCTAGATTTTGGAAGTTTAACCCTAATGCCCTTTGTGGAACGATGTTGAGGAGGTTAGGTGGCATTAGTTGGGTTGTCCATGACTCTACTAGATCTCTCATCCTCGCTAGTTGTGAGAGAGTTGGGTTCAAGTGGCCCGTGGAGGTTCTTGAGACTTTGGCTATGGTTAGAGATCAGTTCTCGAACTTTGTTGCTGAGGTGGAGTTGTTGGTTGTGTATGTCCATGTTTCTTTTGACTAG

Protein sequence

MFSVQPLFAKILMLQKSFALPKARFVRLASSGSIQYEFNPGGNPVTEPPRATALELGERASFLTRRVIRILVEKGFSKEFVNILFTALNLLKQSGSALERNILLNKISFHVEEFVGVDGDGQASLRRESPRSHEVWMLPDARFWKFNPNALCGTMLRRLGGISWVVHDSTRSLILASCERVGFKWPVEVLETLAMVRDQFSNFVAEVELLVVYVHVSFD
Homology
BLAST of PI0011056 vs. ExPASy TrEMBL
Match: A0A0A0LGZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070910 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-16
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 89  NLLKQSGSALERNILLNKISFHVEEFVGVDGDGQASLRRESPRSHEVWMLPDA--RFWKF 147
           NL KQSG++LERNILLNKISFHVEEF GV GDGQASLRRES RSHE+W+ PD    FWKF
Sbjct: 25  NLFKQSGNSLERNILLNKISFHVEEFSGVGGDGQASLRRESLRSHEIWVPPDICYCFWKF 84

BLAST of PI0011056 vs. ExPASy TrEMBL
Match: A0A5D3E6P6 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005870 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.1e-10
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 128 ESPRSHEVWMLPDARFWKFNPNALCGTMLRRLGGISWVVHDSTRSLILASCERVGFKWPV 187
           ES RS ++WM P   FW+FN +A     +  + G SWVV DS  + ILASCER   KWP+
Sbjct: 4   ESTRSQKIWMSPYVGFWRFNLDASWND-VEEISGTSWVVRDSAGAFILASCERAEVKWPM 63

Query: 188 EVLETLAMVRD--QFSNFVAEVELLV 212
           EVLE LA  R    +S++    ++L+
Sbjct: 64  EVLEALATNRGLIVYSDYFGHEDVLI 88

BLAST of PI0011056 vs. ExPASy TrEMBL
Match: A0A5D3E1D7 (Transforming growth factor-beta receptor-associated protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00380 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 36/92 (39.13%), Postives = 48/92 (52.17%), Query Frame = 0

Query: 89  NLLKQSGSALERNILLNKISFHVEEFVGVDGDGQASLRRESPRSHEVWMLPDARFWKFNP 148
           N+++ SG   +RN+LL++     EEF  +       +RRESP SH  W LP    WK N 
Sbjct: 8   NIMRSSGVVSDRNVLLHRAWVRSEEFGLLASVCSPLVRRESPSSHSCWSLPIVGVWKLNF 67

Query: 149 NALCGTMLRRLGGISWVVHDSTRSLILASCER 181
           +A         GGI W+V DS  S IL  CE+
Sbjct: 68  DAY-WVDSPSCGGIGWLVCDSVGSPILVGCEK 98

BLAST of PI0011056 vs. ExPASy TrEMBL
Match: A0A5D3BMW1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00100 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 36/88 (40.91%), Postives = 48/88 (54.55%), Query Frame = 0

Query: 84  LFTALNLLKQSGSALERNILLNKISFHVEEFVGVDGDGQASLRRESPRSHEVWMLPDARF 143
           L+  L ++  S  +L+R  LL++IS HVEEFVG DG G +S  RE+  SHE+W       
Sbjct: 10  LWNYLIMISSSYKSLDRKTLLDRISLHVEEFVGFDGFG-SSFIRETSMSHELWTPQVNSC 69

Query: 144 WKFNPNALCGTMLRRLGGISWVVHDSTR 172
           WK N  A          GI W+VH S +
Sbjct: 70  WKLNLYASWSDH-DHASGIGWLVHASIK 95

BLAST of PI0011056 vs. ExPASy TrEMBL
Match: A0A0A0LGW5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890000 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 33/70 (47.14%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 128 ESPRSHEVWMLPDARFWKFNPNALCGTMLRRLGGISWVVHDSTRSLILASCERVGFKWPV 187
           ESPRS E+WM  +A FWKFN +A            SW   +   + ILA C RV  KWP 
Sbjct: 6   ESPRSQEIWMASNADFWKFNLDA------------SWNDVEEI-TFILAGCARVEVKWPK 62

Query: 188 EVLETLAMVR 198
           EVLE LA +R
Sbjct: 66  EVLEALARIR 62

BLAST of PI0011056 vs. NCBI nr
Match: KGN61225.1 (hypothetical protein Csa_006336 [Cucumis sativus])

HSP 1 Score: 96.3 bits (238), Expect = 3.5e-16
Identity = 47/60 (78.33%), Postives = 51/60 (85.00%), Query Frame = 0

Query: 89  NLLKQSGSALERNILLNKISFHVEEFVGVDGDGQASLRRESPRSHEVWMLPDA--RFWKF 147
           NL KQSG++LERNILLNKISFHVEEF GV GDGQASLRRES RSHE+W+ PD    FWKF
Sbjct: 25  NLFKQSGNSLERNILLNKISFHVEEFSGVGGDGQASLRRESLRSHEIWVPPDICYCFWKF 84

BLAST of PI0011056 vs. NCBI nr
Match: KAA0038679.1 (hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK31290.1 hypothetical protein E5676_scaffold455G005870 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 8.4e-10
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 128 ESPRSHEVWMLPDARFWKFNPNALCGTMLRRLGGISWVVHDSTRSLILASCERVGFKWPV 187
           ES RS ++WM P   FW+FN +A     +  + G SWVV DS  + ILASCER   KWP+
Sbjct: 4   ESTRSQKIWMSPYVGFWRFNLDASWND-VEEISGTSWVVRDSAGAFILASCERAEVKWPM 63

Query: 188 EVLETLAMVRD--QFSNFVAEVELLV 212
           EVLE LA  R    +S++    ++L+
Sbjct: 64  EVLEALATNRGLIVYSDYFGHEDVLI 88

BLAST of PI0011056 vs. NCBI nr
Match: KAA0043266.1 (transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK29330.1 transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 3.0e-07
Identity = 36/92 (39.13%), Postives = 48/92 (52.17%), Query Frame = 0

Query: 89  NLLKQSGSALERNILLNKISFHVEEFVGVDGDGQASLRRESPRSHEVWMLPDARFWKFNP 148
           N+++ SG   +RN+LL++     EEF  +       +RRESP SH  W LP    WK N 
Sbjct: 8   NIMRSSGVVSDRNVLLHRAWVRSEEFGLLASVCSPLVRRESPSSHSCWSLPIVGVWKLNF 67

Query: 149 NALCGTMLRRLGGISWVVHDSTRSLILASCER 181
           +A         GGI W+V DS  S IL  CE+
Sbjct: 68  DAY-WVDSPSCGGIGWLVCDSVGSPILVGCEK 98

BLAST of PI0011056 vs. NCBI nr
Match: TYK00062.1 (hypothetical protein E5676_scaffold596G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 4.3e-06
Identity = 36/88 (40.91%), Postives = 48/88 (54.55%), Query Frame = 0

Query: 84  LFTALNLLKQSGSALERNILLNKISFHVEEFVGVDGDGQASLRRESPRSHEVWMLPDARF 143
           L+  L ++  S  +L+R  LL++IS HVEEFVG DG G +S  RE+  SHE+W       
Sbjct: 10  LWNYLIMISSSYKSLDRKTLLDRISLHVEEFVGFDGFG-SSFIRETSMSHELWTPQVNSC 69

Query: 144 WKFNPNALCGTMLRRLGGISWVVHDSTR 172
           WK N  A          GI W+VH S +
Sbjct: 70  WKLNLYASWSDH-DHASGIGWLVHASIK 95

BLAST of PI0011056 vs. NCBI nr
Match: KGN60244.1 (hypothetical protein Csa_002227 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-05
Identity = 33/70 (47.14%), Postives = 39/70 (55.71%), Query Frame = 0

Query: 128 ESPRSHEVWMLPDARFWKFNPNALCGTMLRRLGGISWVVHDSTRSLILASCERVGFKWPV 187
           ESPRS E+WM  +A FWKFN +A            SW   +   + ILA C RV  KWP 
Sbjct: 6   ESPRSQEIWMASNADFWKFNLDA------------SWNDVEEI-TFILAGCARVEVKWPK 62

Query: 188 EVLETLAMVR 198
           EVLE LA +R
Sbjct: 66  EVLEALARIR 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LGZ41.7e-1678.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G070910 PE=4 SV=1[more]
A0A5D3E6P64.1e-1044.19RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3E1D71.4e-0739.13Transforming growth factor-beta receptor-associated protein 1 isoform X1 OS=Cucu... [more]
A0A5D3BMW12.1e-0640.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LGW51.0e-0547.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G890000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN61225.13.5e-1678.33hypothetical protein Csa_006336 [Cucumis sativus][more]
KAA0038679.18.4e-1044.19hypothetical protein E6C27_scaffold92G002210 [Cucumis melo var. makuwa] >TYK3129... [more]
KAA0043266.13.0e-0739.13transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumi... [more]
TYK00062.14.3e-0640.91hypothetical protein E5676_scaffold596G00100 [Cucumis melo var. makuwa][more]
KGN60244.12.1e-0547.14hypothetical protein Csa_002227 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0011056.1PI0011056.1mRNA