PI0010959 (gene) Melon (PI 482460) v1

Overview


Name	PI0010959
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr11: 19236284 .. 19240098 (-)
RNA-Seq Expression	PI0010959
Synteny	PI0010959

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTCCTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGATCACTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATATCTGACGTACTGAGCAAGAAACATGAGTCTATAGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGACTATTAAATACGTTTATAATACCCGTATGAAGAAAGGCCAATTAGAACATGTTCTCGACATGATGATCCAATTCAACGTGGCAGAAACGAACGGGGCGGCCATTGACGAGCAAACTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACTCTTCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTTTGGGACTAAAAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGGTCCTACTGTTGCTGCTAAGGGCAAGGGGAAGGCTAAGGTAGCCGACAAGAGGAAATGCTTCCACTGCAATATGGATGGACATTGGAAGAGAAACTGCCCCAAGTACCTTGCTGAGAAGAAGAAGGAAAAAGAAGGTAAATATGATTTACTTGTTTTAGAAACTTGTTTAGTGGAAAATGACCAAAATGCCTAGATACTTGATTCAGGAGCCACTAATCATGTTTGTTCTTCTTTACAGAAAACTAGTTCCTTCCAGCAGCTCGAGGAGGGTGAAATGACGCTCAAGGTTGGAACGGGAGACACCATTTCAGCTTGTGCAGTGGGAGATGTGAAGTTTTTTAGAAATAGATATTTAATCTTAGACAATTTGTATATAGTTCCTAAGATTAAAAGGAATCTTGTATCTATTTCTTGTCTTCTTGAACAATGTTACTCTATAAATTTTTCTTTAAATGAAGCGTTCATTTCTAAGAATGGTGTACACATTTGTTCAGCTAAGTTAGAAAACAACTTGTATGTATTAAGACTTAACGAAGCGAAAACAATTTTAAATCATGAGATGTTTAAAACTGCTAACACTCAAAATAAAAGGCAAAGAATTTCTCAAAATAACAATACTTATCTTAGGCATTTAAGATTAGGTCACATTAATCTAGATCGGATCTGGAGATTAGTAAAGAATGGACTTCTAAATGAGTTAGAAGATGATTCATTACCTCCATGTGAATCTTGTCTTGAAGGAAAAATGACTAAAAGACCTTTTACTGGAAAAGGTTATAGAGCCAAAGAGCCCCTAGAACTTATACATTCAGACCTCTGTGGTCCGATGAATGTGAAAGCTCGAGGAGGTTTCGAATACTTCATCTCTTTTATAGATGATTATTCAAGGTATGGTTATTTATACTTAATGGAGCGTAAGTCTGAAGCTCTTGAAAAGTTCAAGGAGTATAAGGCTGAAGTTGAAAATCTGTTAAGTAAAAAGATTAAAATACTTCGATCTGATCGAGGTGGAGAGTACATGGATTTGAGATTCCAAGACTATATGATAGAACATGGAACTCAATCTCAATTCTCAGTATCAGGTACACCTCAACAAAACAGTGTATCAGAAAGGAGAAATAGAACCCTATTAGACATGGTTCGTTCAATGATGAACTATGCTCAATTGCCTAGCTCGTTTTGGGGGTATGCTGTAGAGACTACAGTTCATATCTTGAACAATGTTCCCTCGAAGAGTGTTTTTGAAACACCTTTCGAGTTATGGAGAGGACGTAAACCTAGTTTAAGTCACTTCAGGATATGGGGTTGTCCAGCACACGTGCTAGTGACAAATCCCAAAAAGTTGGAACCTCATTCAAGATTATGCCAATTTATTGGTTACTCTAAAGAAACGAGAGGTGGTCTATTCTTCGATCCACAAGAAAACAGAGTATTTGTATCGACAAACGCTACTTTCTTGGAAGAAGATCACATGAGAGATCATAAACCACGAAGCAAATTAGTATTAAATGAAGCTACTGATGAATCAACAAGAGTTGTTGATGAAGCTGGTCCCTCATCAAGAGTTGATGAAACCAATGCATCAGGTCAGTCCCATCCTTCTCAATCGTTGAGATTGCCTCGACGCAGTGGGAGGATTGTATCACAACCTAACCGTTACTTGGGTTTAACTGAAACTCAGGTTGTTATACCAGATGATGGTGTTGAGGATCTATTGTCCTATAAACAGGCAATGAATGATGTAGACAAAGACCAATGGGTCAAAGCCATGGACCTTAAAATGGAGTCTATGTACTTCAATTCAGTATGGGAGCTTGTAGATCTACCTGAAGGGGTGAAACCCATAGGGTGCAAATGGATCTATAAGAGAAAGAGAGATTCAGCTGGGAAGGTACAGACCTTCAAAGCTAGACTTGTAGCAAAAGGGTACACCCAAAGGGAAGAGGTTGGCTATGAAGAAACTTTTTCCTCTGTTGTTATGTTAAAGTCTGTAAGGATTCTCTTGTCCATAGCCACATTTTATGATTATGAAATATGGCAAATGGATGTCAAGACTGCTTTTCTAAATGGCAATCTTGAAGAGAGTATCTTTATGTCTCAGCCCGAAGGGTCCATAACCCAAGGTCATGAGCAAAAAGTTTGCAAGCTAAATCGATCCATTTATGGGTTGAAACAAGCATCCAGATCTTGGAACATTAGGTTTGATACCACGATCAAATCTTATGGTTTTGACCAAAATGTTGATGAACCTTGTGTATACAAGAAAATCAACAAAGGTAAAGTAGCTGAACTCAAAAGCAAACACAAAAACATATATAATAATTCTAATTGTACCTTCTTAACTCAAAAGCAAACACAAAAACATAATATCTTTAACTCTAAAAACAACAACTTACAAACGAACATAAATAGTTCATAATATGTCTCAACAACCTAACAACTAACAAAATGACATAAATAGTTCATAAGAGACACTTACTTAACTTATCCAAATTATTAGGTTTAAAAAAAGTGTGCAAGATACATGTTTTGAAGTCACATGTTTCAATATCAAAACCAAATATATCTTATCGCCAAAGCTATTTACAAAATTTAACAAGTGTCATTTTCACACATTGTCAGCCTTCTTAAGCTTAGCAAATCATGTTGAATGCATTCTCCCTTTACCTCGAGTTTCTAAGTCATTAAAAACATAACCTCCATTATAGAACTCAACTCAATGCATCAATATCAATTATAATTATAATATATCTACTTATCCTAGTAAACCGACTAAGTCATTAAAATATCAAACATAACACACATCTTCTACAAAATACACCAAACTTGCATATAATGGAGTAGTTCTCCATCAAACTTGACAAATATTACCTTCATCAAAAGAGTTAAGAATACGTTCTCCATCAACTAGAATGAAGCAAAAAACAAAGCCATCAAATTTACCCAAAAAACTAAACTTAACAAACCATGAACAAAGCCATTGACTGTCAATCTCTATACTTTAGTATTCTCATCACAATTGAATTGACAATAACAATTTAACACCACACTATAGAAAGAAATATTTGGTAAAATATATGCTTCTCAATACCAAAAATAGTACAGATGGATGGATTTTTAGCAGACAATTCACTAGTGAAAGCAATACACTACATAAAATACACTCCTCAAGAAGCGAAACTATTTGCTCTTTCAACTCTATCTTTCACAACATGA

mRNA sequence

ATGTCCTCCTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGATCACTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATATCTGACGTACTGAGCAAGAAACATGAGTCTATAGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGACTATTAAATACGTTTATAATACCCGTATGAAGAAAGGCCAATTAGAACATGTTCTCGACATGATGATCCAATTCAACGTGGCAGAAACGAACGGGGCGGCCATTGACGAGCAAACTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACTCTTCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTTTGGGACTAAAAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGACAATTCACTAGTGAAAGCAATACACTACATAAAATACACTCCTCAAGAAGCGAAACTATTTGCTCTTTCAACTCTATCTTTCACAACATGA

Coding sequence (CDS)

ATGTCCTCCTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATGATCACTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATATCTGACGTACTGAGCAAGAAACATGAGTCTATAGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGACTATTAAATACGTTTATAATACCCGTATGAAGAAAGGCCAATTAGAACATGTTCTCGACATGATGATCCAATTCAACGTGGCAGAAACGAACGGGGCGGCCATTGACGAGCAAACTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTAGCAATGCGGTTATGAACAAGATAGAGTATACCATGACTACTCTTCTTAACGAGTTGCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTTTGGGACTAAAAAAATCCAGAAGAAGAAAGGAGGAAAGGGGAAAGACAATTCACTAGTGAAAGCAATACACTACATAAAATACACTCCTCAAGAAGCGAAACTATTTGCTCTTTCAACTCTATCTTTCACAACATGA

Protein sequence

MSSSPVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPSIQIRHETIKYVYNTRMKKGQLEHVLDMMIQFNVAETNGAAIDEQTQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSFGTKKIQKKKGGKGKDNSLVKAIHYIKYTPQEAKLFALSTLSFTT

Homology

[Close]

BLAST of PI0010959 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.4e-66
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 5   PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPS 64
           P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S
Sbjct: 47  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 106

Query: 65  IQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNGAAIDEQTQVSFILESLPKSF 124
            QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NGA IDE +QVSFILESLP+SF
Sbjct: 107 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 166

Query: 125 LQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 184
           LQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 226

Query: 185 PSSFGTKKIQKKKGGKGKDNSLVKA 207
           PSS G KK +KKKGG+G   +L  A
Sbjct: 227 PSSSGNKKWKKKKGGQGNKANLAAA 250

[Close]

BLAST of PI0010959 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.4e-66
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 5   PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPS 64
           P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S
Sbjct: 47  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 106

Query: 65  IQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNGAAIDEQTQVSFILESLPKSF 124
            QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NGA IDE +QVSFILESLP+SF
Sbjct: 107 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 166

Query: 125 LQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 184
           LQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 226

Query: 185 PSSFGTKKIQKKKGGKGKDNSLVKA 207
           PSS G KK +KKKGG+G   +L  A
Sbjct: 227 PSSSGNKKWKKKKGGQGNKANLAAA 250

[Close]

BLAST of PI0010959 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.4e-66
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 5   PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPS 64
           P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S
Sbjct: 164 PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 223

Query: 65  IQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNGAAIDEQTQVSFILESLPKSF 124
            QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NGA IDE +QVSFILESLP+SF
Sbjct: 224 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 283

Query: 125 LQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 184
           LQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 284 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 343

Query: 185 PSSFGTKKIQKKKGGKGKDNSLVKA 207
           PSS G KK +KKKGG+G   +L  A
Sbjct: 344 PSSSGNKKWKKKKGGQGNKANLAAA 367

[Close]

BLAST of PI0010959 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.4e-66
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 5   PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPS 64
           P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S
Sbjct: 47  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 106

Query: 65  IQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNGAAIDEQTQVSFILESLPKSF 124
            QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NGA IDE +QVSFILESLP+SF
Sbjct: 107 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 166

Query: 125 LQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 184
           LQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 226

Query: 185 PSSFGTKKIQKKKGGKGKDNSLVKA 207
           PSS G KK +KKKGG+G   +L  A
Sbjct: 227 PSSSGNKKWKKKKGGQGNKANLAAA 250

[Close]

BLAST of PI0010959 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.4e-66
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 5   PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPS 64
           P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S
Sbjct: 47  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 106

Query: 65  IQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNGAAIDEQTQVSFILESLPKSF 124
            QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NGA IDE +QVSFILESLP+SF
Sbjct: 107 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 166

Query: 125 LQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 184
           LQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 226

Query: 185 PSSFGTKKIQKKKGGKGKDNSLVKA 207
           PSS G KK +KKKGG+G   +L  A
Sbjct: 227 PSSSGNKKWKKKKGGQGNKANLAAA 250

[Close]

BLAST of PI0010959 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 262.7 bits (670), Expect = 3.0e-66
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 5   PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPS 64
           P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S
Sbjct: 47  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 106

Query: 65  IQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNGAAIDEQTQVSFILESLPKSF 124
            QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NGA IDE +QVSFILESLP+SF
Sbjct: 107 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 166

Query: 125 LQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 184
           LQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 226

Query: 185 PSSFGTKKIQKKKGGKGKDNSLVKA 207
           PSS G KK +KKKGG+G   +L  A
Sbjct: 227 PSSSGNKKWKKKKGGQGNKANLAAA 250

[Close]

BLAST of PI0010959 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 262.7 bits (670), Expect = 3.0e-66
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 5   PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPS 64
           P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S
Sbjct: 46  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 105

Query: 65  IQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNGAAIDEQTQVSFILESLPKSF 124
            QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NGA IDE +QVSFILESLP+SF
Sbjct: 106 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 165

Query: 125 LQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 184
           LQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 166 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 225

Query: 185 PSSFGTKKIQKKKGGKGKDNSLVKA 207
           PSS G KK +KKKGG+G   +L  A
Sbjct: 226 PSSSGNKKWKKKKGGQGNKANLAAA 249

[Close]

BLAST of PI0010959 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 262.7 bits (670), Expect = 3.0e-66
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 5   PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPS 64
           P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S
Sbjct: 47  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 106

Query: 65  IQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNGAAIDEQTQVSFILESLPKSF 124
            QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NGA IDE +QVSFILESLP+SF
Sbjct: 107 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 166

Query: 125 LQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 184
           LQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 226

Query: 185 PSSFGTKKIQKKKGGKGKDNSLVKA 207
           PSS G KK +KKKGG+G   +L  A
Sbjct: 227 PSSSGNKKWKKKKGGQGNKANLAAA 250

[Close]

BLAST of PI0010959 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 262.7 bits (670), Expect = 3.0e-66
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 5   PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPS 64
           P  NA++TVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S
Sbjct: 47  PAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 106

Query: 65  IQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNGAAIDEQTQVSFILESLPKSF 124
            QI+H+ +KY+YN RM +G    EHVL+MM+ FNVAE NGA IDE +QVSFILESLP+SF
Sbjct: 107 YQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESF 166

Query: 125 LQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 184
           LQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 226

Query: 185 PSSFGTKKIQKKKGGKGKDNSLVKA 207
           PSS G KK +KKKGG+G   +L  A
Sbjct: 227 PSSSGNKKWKKKKGGQGNKANLAAA 250

[Close]

BLAST of PI0010959 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 262.7 bits (670), Expect = 3.0e-66
Identity = 142/205 (69.27%), Postives = 171/205 (83.41%), Query Frame = 0


Query: 5   PVRNASQTVRDAHDHWTKANEKARVYILASISDVLSKKHESIVTARQIMDSLQEMFGQPS 64
           P  NA+QTVR+ ++ W KANEKAR YILAS+S+VL+KKHES++TAR+IMDSLQEMFGQ S
Sbjct: 47  PAANATQTVREPYERWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQAS 106

Query: 65  IQIRHETIKYVYNTRMKKGQ--LEHVLDMMIQFNVAETNGAAIDEQTQVSFILESLPKSF 124
            QI+H+ +KY+YN RM +G    EHVL++M+ FNVAE NGA IDE +QVSFILESLP+SF
Sbjct: 107 YQIKHDALKYIYNARMNEGASVREHVLNIMVHFNVAEMNGAVIDEASQVSFILESLPESF 166

Query: 125 LQFRSNAVMNKIEYTMTTLLNELQTFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSA 184
           LQFRSNAVMNKI YT+TTLLNELQTF+SLMK KGQK GEANVA S ++F +GS+SGTKS 
Sbjct: 167 LQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQK-GEANVATSTRKFHRGSTSGTKSM 226

Query: 185 PSSFGTKKIQKKKGGKGKDNSLVKA 207
           PSS G KK +KKKGG+G   +L  A
Sbjct: 227 PSSSGNKKWKKKKGGQGNKANLAAA 250

The following BLAST results are available for this feature:

BLAST of PI0010959 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010959 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	1.4e-66	69.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.4e-66	69.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	1.4e-66	69.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	1.4e-66	69.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	1.4e-66	69.27	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of PI0010959 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	3.0e-66	69.27	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	3.0e-66	69.27	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	3.0e-66	69.27	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	3.0e-66	69.27	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061339.1	3.0e-66	69.27	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0010959 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 20..148 e-value: 8.8E-15 score: 54.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..187
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 9..211
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 9..211

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010959.1	PI0010959.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding