PI0010958 (gene) Melon (PI 482460) v1

Overview


Name	PI0010958
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr11: 9866332 .. 9867478 (-)
RNA-Seq Expression	PI0010958
Synteny	PI0010958

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATACCAGATGACGTTGATGAGGGTGATTCTACATACGCCACCACTGGCGGTGAAGATATTCATTACATAGAAACCTCGAATGCATAGAGTCAATGGAATGACGAGTTTGTCGGAAAAATGTTCAGTGATTGGGAGTTGTGTAATCAGTAACACCCAATACTTCAAATCCCCTAACTTGTAATTGTTGAGTAGTTGGCTTATTTTATGTATTTCCATACGATGAACTTTGAATATATGTATTAACATAGTGATTATTGAAGTAATGCAGGATTCGCAACATGCTTTTGTTTGTTACATTAATTTCTTATTATTTTCTTTTTATAGTATGACAACTTCTTCAAGGACCCCAAAGCACCACTAGACGAAAGAGGAAATGCCACCCTCATTAAATGTTTGGTGGAATTGGTATCAGCCGGCGGCTGGAGGTCAGACAACGGGACATTTAGACCCGGTTACCATAGTCATTTGCAGAAAATGATGGCCGAGAGGATGTCGAGACATAACATAACGGCTTCGACAATTGATTGTTGGATAAAGACGCTTAAAAGAGCGTTCCAAGCCATATCTAAAATGAGGGACCCATAGTGCAGTAGGTTCGGTTGGAACGACGAGCTCAAATGTATCATTGCGGAGAAAGATTTGTACGACAATTGGGTGAAGGTATGTTATTGATTCTGTCGATTACTGTTCGTATGTAATAGTAAATTGACTAATTAGTTCCTGCAACATTTGTACAGAGTCATCCAGCCACAAAGGGTCTCCTAAACAAATCCTTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGTGCTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAGGGTACGATTGATCTTTCGCTTATGACAGGAACGATATGAAGTTCCCCACGATGTACAGTCAGGGACTAGACATGTCACCTGACGACATAATGGGTACACGACCCGATCGGTTGTTTGAGGATAGGACTGGTTCGAACGGTTCGAAGAGAAAATGGGGAGAGCAGGCGTTCAAGACGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAATGACCAGCTGAAGGCCATTGAGAATGACTCAAAGAACAATGCCGAGATGCAAGCGTGA

mRNA sequence

ATGACATACCAGATGACGTTGATGAGGGTGATTCTACATACGCCACCACTGGCGTATGACAACTTCTTCAAGGACCCCAAAGCACCACTAGACGAAAGAGGAAATGCCACCCTCATTAAATGTTTGGTGGAATTGGTATCAGCCGGCGGCTGGAGGTCAGACAACGGGACATTTAGACCCGGTTACCATAGTCATTTGCAGAAAATGATGGCCGAGAGGATGTCGAGACATAACATAACGGCTTCGACAATTGATTGTTGGATAAAGACGCTTAAAAGAGCGTTCCAAGCCATATCTAAAATGAGGGACCCATATAGGTTCGGTTGGAACGACGAGCTCAAATGTATCATTGCGGAGAAAGATTTGTACGACAATTGGGTGAAGAGTCATCCAGCCACAAAGGGTCTCCTAAACAAATCCTTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGTGCTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAGGGAACGATATGAAGTTCCCCACGATGTACAGTCAGGGACTAGACATGTCACCTGACGACATAATGGGTACACGACCCGATCGGTTGTTTGAGGATAGGACTGGTTCGAACGGTTCGAAGAGAAAATGGGGAGAGCAGGCGTTCAAGACGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAATGACCAGCTGAAGGCCATTGAGAATGACTCAAAGAACAATGCCGAGATGCAAGCGTGA

Coding sequence (CDS)

ATGACATACCAGATGACGTTGATGAGGGTGATTCTACATACGCCACCACTGGCGTATGACAACTTCTTCAAGGACCCCAAAGCACCACTAGACGAAAGAGGAAATGCCACCCTCATTAAATGTTTGGTGGAATTGGTATCAGCCGGCGGCTGGAGGTCAGACAACGGGACATTTAGACCCGGTTACCATAGTCATTTGCAGAAAATGATGGCCGAGAGGATGTCGAGACATAACATAACGGCTTCGACAATTGATTGTTGGATAAAGACGCTTAAAAGAGCGTTCCAAGCCATATCTAAAATGAGGGACCCATATAGGTTCGGTTGGAACGACGAGCTCAAATGTATCATTGCGGAGAAAGATTTGTACGACAATTGGGTGAAGAGTCATCCAGCCACAAAGGGTCTCCTAAACAAATCCTTTCCCCATTACGACGACCTATGCTACATCTTTGGAAGAGATCGTGCAACAGGAGGTCGTGCTGAAACCTTTGCCGATGTTGGGTCGAACGTGCCTGCAGGGAACGATATGAAGTTCCCCACGATGTACAGTCAGGGACTAGACATGTCACCTGACGACATAATGGGTACACGACCCGATCGGTTGTTTGAGGATAGGACTGGTTCGAACGGTTCGAAGAGAAAATGGGGAGAGCAGGCGTTCAAGACGGCAGAAATTATTCGCAGTGCCATGGAATATGCGAATGACCAGCTGAAGGCCATTGAGAATGACTCAAAGAACAATGCCGAGATGCAAGCGTGA

Protein sequence

MTYQMTLMRVILHTPPLAYDNFFKDPKAPLDERGNATLIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNITASTIDCWIKTLKRAFQAISKMRDPYRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPHYDDLCYIFGRDRATGGRAETFADVGSNVPAGNDMKFPTMYSQGLDMSPDDIMGTRPDRLFEDRTGSNGSKRKWGEQAFKTAEIIRSAMEYANDQLKAIENDSKNNAEMQA

Homology

[Close]

BLAST of PI0010958 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 4.2e-67
Identity = 132/227 (58.15%), Postives = 164/227 (72.25%), Query Frame = 0


Query: 26  PKAPLDERGNATLIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNITASTID 85
           PK    +   A+L++CLVELV+AGGWRSDNGTFRPGY + L +MMA ++   NI ASTID
Sbjct: 8   PKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTID 67

Query: 86  CWIKTLKRAFQAISKMRDP--YRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPH 145
             IK +KR F A+++MR P    FGWNDE KCI+ EK+L+D+WVKSHPA KGLLNKSF H
Sbjct: 68  SRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGLLNKSFVH 127

Query: 146 YDDLCYIFGRDRATGGRAETFADVGSNVPAG---------NDMKFPTMYSQGLDMSPDDI 205
           YD+L Y+FG+DRATGGRAE+FAD+GSN P G          D  FP MYS GL+MSPDD+
Sbjct: 128 YDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDL 187

Query: 206 MGTRPDRLFEDRTGSNGSKRKWGEQAFKTAEIIRSAMEYANDQLKAI 242
           M TR  R+ E R  S+GSKRK    A  + +I+R+A+EY N+QL  I
Sbjct: 188 METRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 234

[Close]

BLAST of PI0010958 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.7e-66
Identity = 130/240 (54.17%), Postives = 172/240 (71.67%), Query Frame = 0


Query: 26  PKAPLDERGNATLIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNI-TASTI 85
           PK    +      ++CLVELVS+GGWRSDNGTF+PGY + LQ+MMAE++   NI  +STI
Sbjct: 8   PKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTI 67

Query: 86  DCWIKTLKRAFQAISKMRDP--YRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFP 145
           DC +K+LK+ + AI++MR P    FGWN+E +CIIAE+DL+D+W+KSHPA KGLL+KSFP
Sbjct: 68  DCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFP 127

Query: 146 HYDDLCYIFGRDRATGGRAETFADVGSNV--------PAG--NDMKFPTMYSQGLDMSPD 205
           +YDDL Y+FG+DRATG R+ETF +VGSNV        P G  +D   PTMYSQG+ MSPD
Sbjct: 128 YYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPD 187

Query: 206 DIMGTRPDRLFEDRTGSNGSKRKWGEQAFKTAEIIRSAMEYANDQLKAIENDSKNNAEMQ 253
           ++ G R  +  E R  S+ SKRK G + ++T E+IRS ME+ N+QLKAI +  K    M+
Sbjct: 188 EMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAME 247

[Close]

BLAST of PI0010958 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.7e-66
Identity = 130/240 (54.17%), Postives = 172/240 (71.67%), Query Frame = 0


Query: 26  PKAPLDERGNATLIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNI-TASTI 85
           PK    +      ++CLVELVS+GGWRSDNGTF+PGY + LQ+MMAE++   NI  +STI
Sbjct: 8   PKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTI 67

Query: 86  DCWIKTLKRAFQAISKMRDP--YRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFP 145
           DC +K+LK+ + AI++MR P    FGWN+E +CIIAE+DL+D+W+KSHPA KGLL+KSFP
Sbjct: 68  DCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFP 127

Query: 146 HYDDLCYIFGRDRATGGRAETFADVGSNV--------PAG--NDMKFPTMYSQGLDMSPD 205
           +YDDL Y+FG+DRATG R+ETF +VGSNV        P G  +D   PTMYSQG+ MSPD
Sbjct: 128 YYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPD 187

Query: 206 DIMGTRPDRLFEDRTGSNGSKRKWGEQAFKTAEIIRSAMEYANDQLKAIENDSKNNAEMQ 253
           ++ G R  +  E R  S+ SKRK G + ++T E+IRS ME+ N+QLKAI +  K    M+
Sbjct: 188 EMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAME 247

[Close]

BLAST of PI0010958 vs. ExPASy TrEMBL
Match: A0A5A7V6Q9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00200 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 3.5e-66
Identity = 131/217 (60.37%), Postives = 161/217 (74.19%), Query Frame = 0


Query: 37  TLIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNITAST-IDCWIKTLKRAF 96
           TL++CL+ELVS GGW+SDNGTFRPGY + L +MMA+++    + A+T IDC IKTLKR F
Sbjct: 19  TLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTF 78

Query: 97  QAISKMRDP--YRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPHYDDLCYIFGR 156
           QAI++MR P    FGWNDE KCI+AEK+L+DNWV+SHPA KGLLNKSFP+YD+L Y+FGR
Sbjct: 79  QAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYVFGR 138

Query: 157 DRATGGRAETFADVGSNVPAGN----DM-----KFPTMYSQGLDMSPDDIMGTRPDRLFE 216
           DRATG  AETFADVGSN P G     DM      FP +YSQG+D+S DD+  +RP R  E
Sbjct: 139 DRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASE 198

Query: 217 DRTGSNGSKRKWGEQAFKTAEIIRSAMEYANDQLKAI 242
            RTGS+GSKRK G Q     E I  A++  N+QL+ I
Sbjct: 199 GRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQI 235

[Close]

BLAST of PI0010958 vs. ExPASy TrEMBL
Match: A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 3.5e-66
Identity = 132/217 (60.83%), Postives = 160/217 (73.73%), Query Frame = 0


Query: 37  TLIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNITAST-IDCWIKTLKRAF 96
           TL++CL+ELVS GGW+SDNGTFRPGY + L +MMAE++    + A+T IDC IKTLKR F
Sbjct: 19  TLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTF 78

Query: 97  QAISKMRDP--YRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPHYDDLCYIFGR 156
           QAI++MR P    FGWNDE KCIIAEK+L+DNWV+SHPA KGLLNK FP+YD+L Y+FGR
Sbjct: 79  QAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGR 138

Query: 157 DRATGGRAETFADVGSNVPAGN----DM-----KFPTMYSQGLDMSPDDIMGTRPDRLFE 216
           DRATG  AETFADVGSN P G     DM      FP +YSQG+D+S DD+  +RP R  E
Sbjct: 139 DRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASE 198

Query: 217 DRTGSNGSKRKWGEQAFKTAEIIRSAMEYANDQLKAI 242
            RTGS+GSKRK G Q     E I  A++  N+QL+ I
Sbjct: 199 GRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQI 235

[Close]

BLAST of PI0010958 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 264.6 bits (675), Expect = 8.6e-67
Identity = 132/227 (58.15%), Postives = 164/227 (72.25%), Query Frame = 0


Query: 26  PKAPLDERGNATLIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNITASTID 85
           PK    +   A+L++CLVELV+AGGWRSDNGTFRPGY + L +MMA ++   NI ASTID
Sbjct: 8   PKHTWTKEEEASLVECLVELVNAGGWRSDNGTFRPGYLNQLVRMMAFKIPGCNIHASTID 67

Query: 86  CWIKTLKRAFQAISKMRDP--YRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPH 145
             IK +KR F A+++MR P    FGWNDE KCI+ EK+L+D+WVKSHPA KGLLNKSF H
Sbjct: 68  SRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDDWVKSHPAAKGLLNKSFVH 127

Query: 146 YDDLCYIFGRDRATGGRAETFADVGSNVPAG---------NDMKFPTMYSQGLDMSPDDI 205
           YD+L Y+FG+DRATGGRAE+FAD+GSN P G          D  FP MYS GL+MSPDD+
Sbjct: 128 YDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAMPDTDFPPMYSPGLNMSPDDL 187

Query: 206 MGTRPDRLFEDRTGSNGSKRKWGEQAFKTAEIIRSAMEYANDQLKAI 242
           M TR  R+ E R  S+GSKRK    A  + +I+R+A+EY N+QL  I
Sbjct: 188 METRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHRI 234

[Close]

BLAST of PI0010958 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.9 bits (668), Expect = 5.6e-66
Identity = 130/240 (54.17%), Postives = 172/240 (71.67%), Query Frame = 0


Query: 26  PKAPLDERGNATLIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNI-TASTI 85
           PK    +      ++CLVELVS+GGWRSDNGTF+PGY + LQ+MMAE++   NI  +STI
Sbjct: 8   PKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTI 67

Query: 86  DCWIKTLKRAFQAISKMRDP--YRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFP 145
           DC +K+LK+ + AI++MR P    FGWN+E +CIIAE+DL+D+W+KSHPA KGLL+KSFP
Sbjct: 68  DCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFP 127

Query: 146 HYDDLCYIFGRDRATGGRAETFADVGSNV--------PAG--NDMKFPTMYSQGLDMSPD 205
           +YDDL Y+FG+DRATG R+ETF +VGSNV        P G  +D   PTMYSQG+ MSPD
Sbjct: 128 YYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPD 187

Query: 206 DIMGTRPDRLFEDRTGSNGSKRKWGEQAFKTAEIIRSAMEYANDQLKAIENDSKNNAEMQ 253
           ++ G R  +  E R  S+ SKRK G + ++T E+IRS ME+ N+QLKAI +  K    M+
Sbjct: 188 EMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRSVMEFGNEQLKAIADWPKEKRAME 247

[Close]

BLAST of PI0010958 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 7.3e-66
Identity = 132/217 (60.83%), Postives = 160/217 (73.73%), Query Frame = 0


Query: 37  TLIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNITAST-IDCWIKTLKRAF 96
           TL++CL+ELVS GGW+SDNGTFRPGY + L +MMAE++    + A+T IDC IKTLKR F
Sbjct: 19  TLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTF 78

Query: 97  QAISKMRDP--YRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPHYDDLCYIFGR 156
           QAI++MR P    FGWNDE KCIIAEK+L+DNWV+SHPA KGLLNK FP+YD+L Y+FGR
Sbjct: 79  QAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGR 138

Query: 157 DRATGGRAETFADVGSNVPAGN----DM-----KFPTMYSQGLDMSPDDIMGTRPDRLFE 216
           DRATG  AETFADVGSN P G     DM      FP +YSQG+D+S DD+  +RP R  E
Sbjct: 139 DRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASE 198

Query: 217 DRTGSNGSKRKWGEQAFKTAEIIRSAMEYANDQLKAI 242
            RTGS+GSKRK G Q     E I  A++  N+QL+ I
Sbjct: 199 GRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQI 235

[Close]

BLAST of PI0010958 vs. NCBI nr
Match: KAA0064022.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 7.3e-66
Identity = 131/217 (60.37%), Postives = 161/217 (74.19%), Query Frame = 0


Query: 37  TLIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNITAST-IDCWIKTLKRAF 96
           TL++CL+ELVS GGW+SDNGTFRPGY + L +MMA+++    + A+T IDC IKTLKR F
Sbjct: 19  TLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAKKLPGCQVRATTVIDCRIKTLKRTF 78

Query: 97  QAISKMRDP--YRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPHYDDLCYIFGR 156
           QAI++MR P    FGWNDE KCI+AEK+L+DNWV+SHPA KGLLNKSFP+YD+L Y+FGR
Sbjct: 79  QAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKSFPYYDELTYVFGR 138

Query: 157 DRATGGRAETFADVGSNVPAGN----DM-----KFPTMYSQGLDMSPDDIMGTRPDRLFE 216
           DRATG  AETFADVGSN P G     DM      FP +YSQG+D+S DD+  +RP R  E
Sbjct: 139 DRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASE 198

Query: 217 DRTGSNGSKRKWGEQAFKTAEIIRSAMEYANDQLKAI 242
            RTGS+GSKRK G Q     E I  A++  N+QL+ I
Sbjct: 199 GRTGSSGSKRKRGSQRDFDVEAIHLALDQTNEQLRQI 235

[Close]

BLAST of PI0010958 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 260.8 bits (665), Expect = 1.2e-65
Identity = 131/217 (60.37%), Postives = 160/217 (73.73%), Query Frame = 0


Query: 37  TLIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNITAST-IDCWIKTLKRAF 96
           TL++CL+ELVS GGW+SDNGTFRPGY + L +MMAE++    + A+T IDC IKTLKR F
Sbjct: 19  TLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTF 78

Query: 97  QAISKMRDP--YRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPHYDDLCYIFGR 156
           QAI++MR P    FGWNDE KCI+AEK+L+DNWV+SHPA KGLLNK FP+YD+L Y+FGR
Sbjct: 79  QAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELTYVFGR 138

Query: 157 DRATGGRAETFADVGSNVPAGN----DM-----KFPTMYSQGLDMSPDDIMGTRPDRLFE 216
           DRATG  AETFADVGSN P G     DM      FP +YSQG+D+S DD+  +RP R  E
Sbjct: 139 DRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQGVDISQDDVRASRPSRASE 198

Query: 217 DRTGSNGSKRKWGEQAFKTAEIIRSAMEYANDQLKAI 242
            RTGS+GSKRK G Q     E I  A++  N+QL+ I
Sbjct: 199 GRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQI 235

[Close]

BLAST of PI0010958 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-09
Identity = 32/121 (26.45%), Postives = 60/121 (49.59%), Query Frame = 0


Query: 38  LIKCLVELVSAGGWRSDNGTFRPGYHSHLQKMMAERMSRHNITASTIDCWIKTLKRAFQA 97
           LI  LVE V+ G  R         ++  +    A+  S+HN     +    K L+R +  
Sbjct: 335 LIDLLVEQVNNGN-RVGQTFITSAWNEMVTAFNAKFGSQHN--KDVLKNRYKHLRRLYND 394

Query: 98  ISKMRDPYRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPHYDDLCYIFGRDRAT 157
           I  + +   F W+     +IA+ D+++ ++++HP  +    K+ P Y +LC+IFG++ + 
Sbjct: 395 IKFLLEQNGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSD 452

Query: 158 G 159
           G
Sbjct: 455 G 452

[Close]

BLAST of PI0010958 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-07
Identity = 19/63 (30.16%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 89  KTLKRAFQAISKMRDPYRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPHYDDLC 148
           KTL+  F++++ +     F W+D  + ++A+  ++D ++K HP ++    KS P Y DLC
Sbjct: 71  KTLRNLFKSVNNLLIEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKDLC 130

Query: 149 YIF 152
            ++
Sbjct: 131 LVY 133

[Close]

BLAST of PI0010958 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 53.5 bits (127), Expect = 2.8e-07
Identity = 19/63 (30.16%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 89  KTLKRAFQAISKMRDPYRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPHYDDLC 148
           KTL+  F++++ +     F W+D  + ++A+  ++D ++K HP ++    KS P Y DLC
Sbjct: 71  KTLRNLFKSVNNLLIEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRSFRIKSIPCYKDLC 130

Query: 149 YIF 152
            ++
Sbjct: 131 LVY 133

[Close]

BLAST of PI0010958 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 6.3e-07
Identity = 27/80 (33.75%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 88  IKTLKRAFQA-ISKMRDPYRFGWNDELKCIIAEKDLYDNWVKSHPATKGLLNKSFPHYDD 147
           +K LK  +Q+ +   R    FGW+ E K   A  +++ +++K+HP  K +  +S  H++D
Sbjct: 70  LKFLKNLYQSYLDLKRFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKHMQTESIDHFED 129

Query: 148 LCYIFGRDRATGGRAETFAD 167
           L  IFG   ATG  A   +D
Sbjct: 130 LQIIFGDVVATGSFAVGMSD 149

The following BLAST results are available for this feature:

BLAST of PI0010958 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010958 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C1M0	4.2e-67	58.15	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U0H7	2.7e-66	54.17	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	2.7e-66	54.17	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7V6Q9	3.5e-66	60.37	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VES2	3.5e-66	60.83	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0010958 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05082.1	8.6e-67	58.15	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008441954.1	5.6e-66	54.17	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0066208.1	7.3e-66	60.83	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0064022.1	7.3e-66	60.37	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0032766.1	1.2e-65	60.37	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0010958 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24960.2	1.8e-09	26.45	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G02210.1	2.8e-07	30.16	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	2.8e-07	30.16	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G30140.1	6.3e-07	33.75	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 35..241

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010958.1	PI0010958.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane