PI0010939 (gene) Melon (PI 482460) v1

Overview


Name	PI0010939
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DNA-directed RNA polymerase subunit alpha
Location	tig00003626: 1024407 .. 1025153 (+)
RNA-Seq Expression	PI0010939
Synteny	PI0010939

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCTTATTATGGACGCTTTATTCTGTCTCCACTTATGAAGGGGCAAGCGGATACTATACTATAGGCATTGCAATGCGAAAAGCTTTGCTTGGAGAAATAGAGGTGAAAAGTATATTGACACACGTGCAAAATCTGAAAAAATCCCACATTCATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTCATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTCTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTGAAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAACCAAGAGAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTTTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTTTGAAATAATAAACAATTAA

mRNA sequence

ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCTTATTATGGACGCTTTATTCTGTGAAAAGTATATTGACACACGTGCAAAATCTGAAAAAATCCCACATTCATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTCATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTCTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTGAAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAACCAAGAGAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTTTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTTTGAAATAATAAACAATTAA

Coding sequence (CDS)

ATGGTTCGAGAGAAAATAAGAGTATCGACTCGGACACTAAAGTGGAAGTGTGTTGAATCAAGAGCAGACAGTAAGCTTATTATGGACGCTTTATTCTGTGAAAAGTATATTGACACACGTGCAAAATCTGAAAAAATCCCACATTCATACTCTACCATAGTCGGTATTCAAGAATCAGTACATGAAATTTTCATGAATTTGAAAGAAATTGTATTGAGAAGTAATCTCTATGGAACTCGTGATGCGTCTATTTGTGTCAAGGGTCCTGGATGCGTAACTGCTCAAGACATCATCTTACCACCTTCGGTGGAAATCGTTGATAATACACAGCATATAGCTAACCTAACGGAACCAATTAATTTGTGTATTGAATTAAAGATCGAGAGGAATCGCGGATATCATATACAAACGCCAAATAATTTGAAAGACGCAAGTTATCCTATGGATGCTATATTCATGCCTGTTCGAAATGTTAATCATAGTATTCATTCTTATGTAAATGGGAATGAAAACCAAGAGAGACTTTTTCTCGAAATATGGACCAATGGAAGTTTAACTCCTAAAGAAGCACTTCATGAAGCCTCTCGGAATTTGATTGATTTTTTATTCCTTTTTTACATGCGGAAGAAGAAAAAGAAAACTTCCATTTTTGAAATAATAAACAATTAA

Protein sequence

MVREKIRVSTRTLKWKCVESRADSKLIMDALFCEKYIDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDIILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVRNVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSIFEIINN

Homology

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BLAST of PI0010939 vs. ExPASy Swiss-Prot
Match: Q4VZK3 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 4.3e-97
Identity = 188/246 (76.42%), Postives = 198/246 (80.49%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                         E  
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + 
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEKEN- 240

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BLAST of PI0010939 vs. ExPASy Swiss-Prot
Match: Q09WY5 (DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.2e-88
Identity = 169/230 (73.48%), Postives = 180/230 (78.26%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           M +EK+ VSTR L+WKCVESRADSK +    F                         E  
Sbjct: 1   MGQEKVTVSTRPLQWKCVESRADSKRLYYGRFLLAPLMRGQADTIGIAMRRALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPG VTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGYVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLTEPI LCIEL+IERNRGY I+TPNN ++ SYP+DA+FMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPITLCIELQIERNRGYRIKTPNNFQNGSYPIDAVFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFY 207
           N NHSIHSYVNGNENQE LFLEIWTNGSLTPKEALHEASRNLID    F+
Sbjct: 181 NANHSIHSYVNGNENQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFF 230

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BLAST of PI0010939 vs. ExPASy Swiss-Prot
Match: Q49KW6 (DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoA PE=3 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 1.6e-88
Identity = 169/229 (73.80%), Postives = 179/229 (78.17%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREK+RVSTRTL+WKCVESRADSK +    F                         E  
Sbjct: 1   MVREKVRVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAK EKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTR+ASICVKGPGCVTAQD
Sbjct: 61  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRNASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILP SVEIVDNTQ+IANLTEPINLCI L+IERNRGYHI+TP N +D SYP+DA+FMPVR
Sbjct: 121 IILPTSVEIVDNTQYIANLTEPINLCIGLQIERNRGYHIKTPKNFQDGSYPIDAVFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLF 206
           N NHSIHSY NGNE QE LFLEIWTNGSLTPKEALHEASRNLID    F
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF 229

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BLAST of PI0010939 vs. ExPASy Swiss-Prot
Match: Q2PMQ3 (DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 6.9e-87
Identity = 171/246 (69.51%), Postives = 187/246 (76.02%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTL+WKCVESR DSK +    F                         E  
Sbjct: 1   MVREKIRVSTRTLQWKCVESRIDSKRLYYGRFILSPLMKGQADTIGIAMRRVLLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TR KSEKIPH YSTI+GI+ESVHEI MNLKEIVLRSNLYGTRDASIC KGPG VTAQD
Sbjct: 61  CITRVKSEKIPHEYSTIIGIEESVHEILMNLKEIVLRSNLYGTRDASICFKGPGYVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIAN+TEP+NLCIELKIERNRGY I+T  N +D SYP+DA FMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANVTEPVNLCIELKIERNRGYRIKTLKNFQDGSYPIDATFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEAL+EASRNLID LF+ ++  ++     
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLID-LFIPFLHAEEDN--- 240

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BLAST of PI0010939 vs. ExPASy Swiss-Prot
Match: Q09G14 (DNA-directed RNA polymerase subunit alpha OS=Platanus occidentalis OX=4403 GN=rpoA PE=3 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 4.4e-86
Identity = 163/229 (71.18%), Postives = 177/229 (77.29%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREK+ VSTRTL+WKCVESRADSK +    F                         E  
Sbjct: 1   MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLIKGQADTIGIAMRRALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGI+ESVHEI MNLKEIVLRSNLYGTR+ASIC++GPG VTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRNASICIRGPGYVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           II PPSVE VDNTQHIANLTEPI+ CIEL+IERNRGY ++TPNN +D SYP+DA+FMPVR
Sbjct: 121 IISPPSVETVDNTQHIANLTEPIDFCIELEIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLF 206
           N NHSIHSY NGNE QE LFLEIWTNGSLTPKEALHEASRNLID    F
Sbjct: 181 NANHSIHSYANGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPF 229

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BLAST of PI0010939 vs. ExPASy TrEMBL
Match: A0A218KG62 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoA PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 188/246 (76.42%), Postives = 198/246 (80.49%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                         E  
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + 
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEKEN- 240

[Close]

BLAST of PI0010939 vs. ExPASy TrEMBL
Match: A0A1X9Q1P4 (DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 188/246 (76.42%), Postives = 198/246 (80.49%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                         E  
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + 
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEKEN- 240

[Close]

BLAST of PI0010939 vs. ExPASy TrEMBL
Match: A0A249RZB5 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoA PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 188/246 (76.42%), Postives = 197/246 (80.08%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                         E  
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + 
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEKEN- 240

[Close]

BLAST of PI0010939 vs. ExPASy TrEMBL
Match: A0A249RXS6 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo subsp. agrestis OX=217619 GN=rpoA PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 188/246 (76.42%), Postives = 197/246 (80.08%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                         E  
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + 
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEKEN- 240

[Close]

BLAST of PI0010939 vs. ExPASy TrEMBL
Match: A0A286NFR2 (DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. flexuosus OX=1120798 GN=rpoA PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.6e-94
Identity = 188/246 (76.42%), Postives = 197/246 (80.08%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                         E  
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + 
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEKEN- 240

[Close]

BLAST of PI0010939 vs. NCBI nr
Match: YP_009004075.1 (RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha subunit [Cucumis sativus] >Q4VZK3.1 RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit alpha; Short=RNA polymerase subunit alpha [Cucumis sativus] >ALF03334.1 RNA polymerase alpha subunit [Cucumis sativus var. hardwickii] >AVE15363.1 RpoA [Cucumis sativus var. sativus] >AAZ94682.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI97448.1 RNA polymerase alpha subunit [Cucumis sativus] >ABI98777.1 RNA polymerase alpha subunit [Cucumis sativus])

HSP 1 Score: 355.5 bits (911), Expect = 3.3e-94
Identity = 188/246 (76.42%), Postives = 198/246 (80.49%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                         E  
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + 
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEKEN- 240

[Close]

BLAST of PI0010939 vs. NCBI nr
Match: QJF46416.1 (RNA polymerase alpha subunit [Cucumis melo])

HSP 1 Score: 355.5 bits (911), Expect = 3.3e-94
Identity = 188/246 (76.42%), Postives = 197/246 (80.08%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                         E  
Sbjct: 9   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 68

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 69  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 128

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 129 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 188

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + 
Sbjct: 189 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEKEN- 248

[Close]

BLAST of PI0010939 vs. NCBI nr
Match: YP_009346515.1 (RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alpha subunit [Cucumis x hytivus] >QCY72874.1 RpoA [Cucumis hystrix])

HSP 1 Score: 355.5 bits (911), Expect = 3.3e-94
Identity = 188/246 (76.42%), Postives = 198/246 (80.49%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                         E  
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANL EPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + 
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEKEN- 240

[Close]

BLAST of PI0010939 vs. NCBI nr
Match: YP_004841815.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA polymerase alpha subunit [Cucumis melo subsp. agrestis] >ASY96605.1 RNA polymerase alpha subunit [Cucumis melo var. conomon] >ASY96692.1 RNA polymerase alpha subunit [Cucumis melo var. makuwa] >ASY96779.1 RNA polymerase alpha subunit [Cucumis melo var. momordica] >ASY96866.1 RNA polymerase alpha subunit [Cucumis melo var. dudaim] >ASY96953.1 RNA polymerase alpha subunit [Cucumis melo var. cantalupo] >ASY97127.1 RNA polymerase alpha subunit [Cucumis melo var. inodorus] >ASY97301.1 RNA polymerase alpha subunit [Cucumis melo var. flexuosus] >QRW36587.1 RNA polymerase alpha subunit [Cucumis melo])

HSP 1 Score: 355.5 bits (911), Expect = 3.3e-94
Identity = 188/246 (76.42%), Postives = 197/246 (80.08%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                         E  
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLTEPIN CIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINFCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++K + 
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEKEN- 240

[Close]

BLAST of PI0010939 vs. NCBI nr
Match: QHB75996.1 (RNA polymerase alpha subunit [Cucumis melo subsp. melo])

HSP 1 Score: 354.8 bits (909), Expect = 5.6e-94
Identity = 188/246 (76.42%), Postives = 197/246 (80.08%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREKIRVSTRTLKWKCVESRADSK +    F                         E  
Sbjct: 1   MVREKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRKALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSEKIPH YSTIVGIQESVHEI MNLKEIVLRSNLYGTRDASICVKGPGCVTAQD
Sbjct: 61  CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNN +DASYPMDAIFMPVR
Sbjct: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVR 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLFYMRKKKKKTSI 223
           NVNHSIHSYVNGNE QE LFLEIWTNGSLTPKEALHEASRNLID LF+ ++  +++    
Sbjct: 181 NVNHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLID-LFIPFLHAEEEN--- 240

[Close]

BLAST of PI0010939 vs. TAIR 10
Match: ATCG00740.1 (RNA polymerase subunit alpha )

HSP 1 Score: 298.9 bits (764), Expect = 3.4e-81
Identity = 152/229 (66.38%), Postives = 171/229 (74.67%), Query Frame = 0


Query: 1   MVREKIRVSTRTLKWKCVESRADSKLIMDALF------------------------CEKY 60
           MVREK++VSTRTL+WKCVES+ DSK +    F                         E  
Sbjct: 1   MVREKVKVSTRTLQWKCVESKRDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 61  IDTRAKSEKIPHSYSTIVGIQESVHEIFMNLKEIVLRSNLYGTRDASICVKGPGCVTAQD 120
             TRAKSE IPH YS I GIQESVHEI MNL EIVLRSNLYGTR+A ICV+GPG +TA+D
Sbjct: 61  CITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARD 120

Query: 121 IILPPSVEIVDNTQHIANLTEPINLCIELKIERNRGYHIQTPNNLKDASYPMDAIFMPVR 180
           IILPP+VEI+DNTQHIA LTEPI+LCIELKIERNRGY ++  NN +D SYP+DA+FMPV 
Sbjct: 121 IILPPAVEIIDNTQHIATLTEPIDLCIELKIERNRGYSLKMSNNFEDRSYPIDAVFMPVE 180

Query: 181 NVNHSIHSYVNGNENQERLFLEIWTNGSLTPKEALHEASRNLIDFLFLF 206
           N NHSIHSY NGNE QE LFLEIWTNGSLTPKEALH+ASRNLI+    F
Sbjct: 181 NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHQASRNLINLFIPF 229

The following BLAST results are available for this feature:

BLAST of PI0010939 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZK3	4.3e-97	76.42	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
Q09WY5	1.2e-88	73.48	DNA-directed RNA polymerase subunit alpha OS=Morus indica OX=248361 GN=rpoA PE=3...	[more]
Q49KW6	1.6e-88	73.80	DNA-directed RNA polymerase subunit alpha OS=Eucalyptus globulus subsp. globulus...	[more]
Q2PMQ3	6.9e-87	69.51	DNA-directed RNA polymerase subunit alpha OS=Glycine max OX=3847 GN=rpoA PE=3 SV...	[more]
Q09G14	4.4e-86	71.18	DNA-directed RNA polymerase subunit alpha OS=Platanus occidentalis OX=4403 GN=rp...	[more]

BLAST of PI0010939 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG62	1.6e-94	76.42	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus var. hardwickii OX=...	[more]
A0A1X9Q1P4	1.6e-94	76.42	DNA-directed RNA polymerase subunit alpha OS=Cucumis sativus OX=3659 GN=rpoA PE=...	[more]
A0A249RZB5	1.6e-94	76.42	DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. cantalupensis OX=...	[more]
A0A249RXS6	1.6e-94	76.42	DNA-directed RNA polymerase subunit alpha OS=Cucumis melo subsp. agrestis OX=217...	[more]
A0A286NFR2	1.6e-94	76.42	DNA-directed RNA polymerase subunit alpha OS=Cucumis melo var. flexuosus OX=1120...	[more]

BLAST of PI0010939 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009004075.1	3.3e-94	76.42	RNA polymerase alpha subunit [Cucumis hystrix] >YP_247632.1 RNA polymerase alpha...	[more]
QJF46416.1	3.3e-94	76.42	RNA polymerase alpha subunit [Cucumis melo]	[more]
YP_009346515.1	3.3e-94	76.42	RNA polymerase alpha subunit [Cucumis x hytivus] >AOW71126.1 RNA polymerase alph...	[more]
YP_004841815.1	3.3e-94	76.42	RNA polymerase alpha subunit [Cucumis melo subsp. melo] >YP_009860105.1 RNA poly...	[more]
QHB75996.1	5.6e-94	76.42	RNA polymerase alpha subunit [Cucumis melo subsp. melo]	[more]

BLAST of PI0010939 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00740.1	3.4e-81	66.38	RNA polymerase subunit alpha	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	SMART	SM00662	rpoldneu2	coord: 23..208 e-value: 9.5E-6 score: 0.4
IPR011263	DNA-directed RNA polymerase, RpoA/D/Rpb3-type	PFAM	PF01193	RNA_pol_L	coord: 135..200 e-value: 9.1E-7 score: 28.9
IPR011262	DNA-directed RNA polymerase, insert domain	PFAM	PF01000	RNA_pol_A_bac	coord: 40..134 e-value: 3.4E-15 score: 56.4
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	GENE3D	2.170.120.12		coord: 39..152 e-value: 1.8E-44 score: 153.5
IPR036643	DNA-directed RNA polymerase, insert domain superfamily	SUPERFAMILY	56553	Insert subdomain of RNA polymerase alpha subunit	coord: 39..153
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 153..200 e-value: 1.8E-44 score: 153.5
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 71..205
IPR011773	DNA-directed RNA polymerase, alpha subunit	PANTHER	PTHR32108	DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA	coord: 39..206
None	No IPR available	CDD	cd06928	RNAP_alpha_NTD	coord: 39..205 e-value: 1.8146E-72 score: 217.337

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010939.1	PI0010939.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0046983	protein dimerization activity