PI0010934 (gene) Melon (PI 482460) v1

Overview


Name	PI0010934
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag protease polyprotein
Location	chr09: 6185541 .. 6185804 (+)
RNA-Seq Expression	PI0010934
Synteny	PI0010934

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGCCGCGTAGGGGTGCACGAAGGGGTGTTCGGGGAGGTCGAGGTGCTGGTCGAGCTCAGTCTGTCGAGCAACCCGTTGAGCCGCCTGTGGAGCAGAATGTCAACCCTACTGCACCCGTCACTCAGGCTGATCTTGCCGCCTTGTCCAACCAGTTAGAGCAGCGATTCAGGGACATTGTGACCCAGGTTTTGGCACAGCACCAGCCCGCCCCTGCAGCTCCAACTCAGCCCCTAGTTGTACCACCAAGCTTCCCAGATTAG

mRNA sequence

ATGCCGCCGCGTAGGGGTGCACGAAGGGGTGTTCGGGGAGGTCGAGGTGCTGGTCGAGCTCAGTCTGTCGAGCAACCCGTTGAGCCGCCTGTGGAGCAGAATGTCAACCCTACTGCACCCGTCACTCAGGCTGATCTTGCCGCCTTGTCCAACCAGTTAGAGCAGCGATTCAGGGACATTGTGACCCAGGTTTTGGCACAGCACCAGCCCGCCCCTGCAGCTCCAACTCAGCCCCTAGTTGTACCACCAAGCTTCCCAGATTAG

Coding sequence (CDS)

ATGCCGCCGCGTAGGGGTGCACGAAGGGGTGTTCGGGGAGGTCGAGGTGCTGGTCGAGCTCAGTCTGTCGAGCAACCCGTTGAGCCGCCTGTGGAGCAGAATGTCAACCCTACTGCACCCGTCACTCAGGCTGATCTTGCCGCCTTGTCCAACCAGTTAGAGCAGCGATTCAGGGACATTGTGACCCAGGTTTTGGCACAGCACCAGCCCGCCCCTGCAGCTCCAACTCAGCCCCTAGTTGTACCACCAAGCTTCCCAGATTAG

Protein sequence

MPPRRGARRGVRGGRGAGRAQSVEQPVEPPVEQNVNPTAPVTQADLAALSNQLEQRFRDIVTQVLAQHQPAPAAPTQPLVVPPSFPD

Homology

[Close]

BLAST of PI0010934 vs. ExPASy TrEMBL
Match: A0A5A7SLL2 (Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00120 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MPPRRGARRGVRGGRGAGRAQSVEQPVEPPVEQNVNPTAPVTQADLAALSNQLEQRFRDI 60
           MPPRRGARRG RGGRG G A  V+  V+ P+ Q ++P APVT ADL A    +EQRFRD+
Sbjct: 143 MPPRRGARRGSRGGRGRG-AGRVQLEVQ-PIAQAIDPAAPVTHADLTA----MEQRFRDL 202

Query: 61  VTQVLAQHQPAPAAPTQPLVVP 83
           + Q+  Q QPAP AP   LVVP
Sbjct: 203 IMQMREQQQPAPPAPALALVVP 218

[Close]

BLAST of PI0010934 vs. ExPASy TrEMBL
Match: A0A5A7UIF4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00530 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 48/87 (55.17%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MPPRRGARRGVRGGRGAGRAQSVEQPVEPPVEQNVNPTAPVTQADLAALSNQLEQRFRDI 60
          MPPRRG RRG RGGRG G    + QP   PV Q  +PTAPVT ADLAA    +EQRF D+
Sbjct: 13 MPPRRGVRRGGRGGRGKG--AELVQPEVQPVAQATDPTAPVTHADLAA----MEQRFGDL 72

Query: 61 VTQVLAQHQPAPAAPTQPLVVPPSFPD 88
          + Q+  + QP P AP   LVVP   PD
Sbjct: 73 IMQIRKKQQPVPPAPGPALVVPQVVPD 93

[Close]

BLAST of PI0010934 vs. ExPASy TrEMBL
Match: A0A5D3CIZ9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00660 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 49/88 (55.68%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 1   MPPRRGARRGVRGGRGA-GRAQSVEQPVEPPVEQNVNPTAPVTQADLAALSNQLEQRFRD 60
           MPPRRGARRG RGGRG  GR     QP   PV Q  +P  PVT ADLAA    +EQRFRD
Sbjct: 145 MPPRRGARRGGRGGRGGRGRGAGRVQPEVQPVTQATDPAVPVTHADLAA----MEQRFRD 204

Query: 61  IVTQVLAQHQPAPAAPTQPLVVPPSFPD 88
           ++ Q+  Q QP P AP    VVP   PD
Sbjct: 205 LIMQMWEQQQPTPPAPAPVPVVPQVVPD 228

[Close]

BLAST of PI0010934 vs. ExPASy TrEMBL
Match: A0A5A7SQP7 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3133G00010 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.3e-11
Identity = 49/87 (56.32%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MPPRRGARRGVRGGRGAGRAQSVEQPVEPPVEQNVNPTAPVTQADLAALSNQLEQRFRDI 60
          MPPRRGARRG RGGRG G  +   QP   PV Q  NP APVT ADLAA    +EQRFRD+
Sbjct: 1  MPPRRGARRGGRGGRGRGAGR--VQPEVQPVAQATNPAAPVTHADLAA----MEQRFRDL 60

Query: 61 VTQVLAQHQPAPAAPT-QPLVVPPSFP 87
          + Q+  Q QPAP AP   P + P   P
Sbjct: 61 IMQMREQQQPAPPAPAPAPALAPAPAP 81

[Close]

BLAST of PI0010934 vs. ExPASy TrEMBL
Match: A0A5D3D2S7 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G004090 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 7.3e-11
Identity = 48/87 (55.17%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MPPRRGARRGVRGGRGAGRAQSVEQPVEPPVEQNVNPTAPVTQADLAALSNQLEQRFRDI 60
          MPPRRGARRG RGGRG G  +   QP   PV Q  +P APVT A+LAA    +EQRFRD+
Sbjct: 13 MPPRRGARRGDRGGRGRGAGR--VQPEVQPVAQATDPAAPVTHANLAA----MEQRFRDL 72

Query: 61 VTQVLAQHQPAPAAPTQPLVVPPSFPD 88
          + Q+  Q QP P AP   LVVP    D
Sbjct: 73 IMQMREQQQPTPLAPAPALVVPQVVSD 93

[Close]

BLAST of PI0010934 vs. NCBI nr
Match: TYK11903.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.9e-11
Identity = 49/88 (55.68%), Postives = 54/88 (61.36%), Query Frame = 0


Query: 1   MPPRRGARRGVRGGRGA-GRAQSVEQPVEPPVEQNVNPTAPVTQADLAALSNQLEQRFRD 60
           MPPRRGARRG RGGRG  GR     QP   PV Q  +P  PVT ADLAA    +EQRFRD
Sbjct: 145 MPPRRGARRGGRGGRGGRGRGAGRVQPEVQPVTQATDPAVPVTHADLAA----MEQRFRD 204

Query: 61  IVTQVLAQHQPAPAAPTQPLVVPPSFPD 88
           ++ Q+  Q QP P AP    VVP   PD
Sbjct: 205 LIMQMWEQQQPTPPAPAPVPVVPQVVPD 228

[Close]

BLAST of PI0010934 vs. NCBI nr
Match: KAA0026032.1 (gag-protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.9e-11
Identity = 48/82 (58.54%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 1   MPPRRGARRGVRGGRGAGRAQSVEQPVEPPVEQNVNPTAPVTQADLAALSNQLEQRFRDI 60
           MPPRRGARRG RGGRG G A  V+  V+ P+ Q ++P APVT ADL A    +EQRFRD+
Sbjct: 143 MPPRRGARRGSRGGRGRG-AGRVQLEVQ-PIAQAIDPAAPVTHADLTA----MEQRFRDL 202

Query: 61  VTQVLAQHQPAPAAPTQPLVVP 83
           + Q+  Q QPAP AP   LVVP
Sbjct: 203 IMQMREQQQPAPPAPALALVVP 218

[Close]

BLAST of PI0010934 vs. NCBI nr
Match: KAA0053259.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 3.9e-11
Identity = 48/87 (55.17%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MPPRRGARRGVRGGRGAGRAQSVEQPVEPPVEQNVNPTAPVTQADLAALSNQLEQRFRDI 60
          MPPRRG RRG RGGRG G    + QP   PV Q  +PTAPVT ADLAA    +EQRF D+
Sbjct: 13 MPPRRGVRRGGRGGRGKG--AELVQPEVQPVAQATDPTAPVTHADLAA----MEQRFGDL 72

Query: 61 VTQVLAQHQPAPAAPTQPLVVPPSFPD 88
          + Q+  + QP P AP   LVVP   PD
Sbjct: 73 IMQIRKKQQPVPPAPGPALVVPQVVPD 93

[Close]

BLAST of PI0010934 vs. NCBI nr
Match: KAA0031881.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 49/87 (56.32%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MPPRRGARRGVRGGRGAGRAQSVEQPVEPPVEQNVNPTAPVTQADLAALSNQLEQRFRDI 60
          MPPRRGARRG RGGRG G  +   QP   PV Q  NP APVT ADLAA    +EQRFRD+
Sbjct: 1  MPPRRGARRGGRGGRGRGAGR--VQPEVQPVAQATNPAAPVTHADLAA----MEQRFRDL 60

Query: 61 VTQVLAQHQPAPAAPT-QPLVVPPSFP 87
          + Q+  Q QPAP AP   P + P   P
Sbjct: 61 IMQMREQQQPAPPAPAPAPALAPAPAP 81

[Close]

BLAST of PI0010934 vs. NCBI nr
Match: TYK18075.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.5e-10
Identity = 48/87 (55.17%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 1  MPPRRGARRGVRGGRGAGRAQSVEQPVEPPVEQNVNPTAPVTQADLAALSNQLEQRFRDI 60
          MPPRRGARRG RGGRG G  +   QP   PV Q  +P APVT A+LAA    +EQRFRD+
Sbjct: 13 MPPRRGARRGDRGGRGRGAGR--VQPEVQPVAQATDPAAPVTHANLAA----MEQRFRDL 72

Query: 61 VTQVLAQHQPAPAAPTQPLVVPPSFPD 88
          + Q+  Q QP P AP   LVVP    D
Sbjct: 73 IMQMREQQQPTPLAPAPALVVPQVVSD 93

The following BLAST results are available for this feature:

BLAST of PI0010934 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010934 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SLL2	1.9e-11	58.54	Gag-protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5A7UIF4	1.9e-11	55.17	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold10...	[more]
A0A5D3CIZ9	1.9e-11	55.68	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7SQP7	7.3e-11	56.32	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol...	[more]
A0A5D3D2S7	7.3e-11	55.17	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of PI0010934 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11903.1	3.9e-11	55.68	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0026032.1	3.9e-11	58.54	gag-protease polyprotein [Cucumis melo var. makuwa]	[more]
KAA0053259.1	3.9e-11	55.17	pol protein [Cucumis melo var. makuwa]	[more]
KAA0031881.1	1.5e-10	56.32	gag protease polyprotein [Cucumis melo var. makuwa]	[more]
TYK18075.1	1.5e-10	55.17	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of PI0010934 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010934.1	PI0010934.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity