PI0010913 (gene) Melon (PI 482460) v1

Overview


Name	PI0010913
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Photosystem II reaction center protein H
Location	chr11: 5177408 .. 5177629 (-)
RNA-Seq Expression	PI0010913
Synteny	PI0010913

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACACAAACTATTGATGATAGTTCTAGATCTGGGCCAAGACAAACTGTTGTAGAGGATTTATTGAAACCATTGAATTTAAAATATGGTAAAGTGGCTTTTGGGTGGGGAACTACACCTTTAATGGGTGTTGCGATGGGTTTATTTACGATATTCCTATGTATTATTTCAGAGATTTATAATTCTTTCATTTTACTGGATGAAATTTCAAGTAATTAG

mRNA sequence

ATGACTACACAAACTATTGATGATAGTTCTAGATCTGGGCCAAGACAAACTGTTGTAGAGGATTTATTGAAACCATTGAATTTAAAATATGGTAAAGTGGCTTTTGGGTGGGGAACTACACCTTTAATGGGTGTTGCGATGGGTTTATTTACGATATTCCTATGTATTATTTCAGAGATTTATAATTCTTTCATTTTACTGGATGAAATTTCAAGTAATTAG

Coding sequence (CDS)

ATGACTACACAAACTATTGATGATAGTTCTAGATCTGGGCCAAGACAAACTGTTGTAGAGGATTTATTGAAACCATTGAATTTAAAATATGGTAAAGTGGCTTTTGGGTGGGGAACTACACCTTTAATGGGTGTTGCGATGGGTTTATTTACGATATTCCTATGTATTATTTCAGAGATTTATAATTCTTTCATTTTACTGGATGAAATTTCAAGTAATTAG

Protein sequence

MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEIYNSFILLDEISSN

Homology

[Close]

BLAST of PI0010913 vs. ExPASy Swiss-Prot
Match: Q4VZI9 (Photosystem II reaction center protein H OS=Cucumis sativus OX=3659 GN=psbH PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 2.9e-26
Identity = 60/73 (82.19%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+DDSS+SGPR+TVV DLLKPLN +YGKVA GWGTTPLMGVAM LF IFLCII EI
Sbjct: 1  MATQTVDDSSKSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMSLFAIFLCIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD ISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of PI0010913 vs. ExPASy Swiss-Prot
Match: Q2PMQ6 (Photosystem II reaction center protein H OS=Glycine max OX=3847 GN=psbH PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.6e-24
Identity = 57/73 (78.08%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT++D+SRSGPR+TVV DLLKPLN +YGKVA GWGTTPLMGVAM LF IFL II EI
Sbjct: 1  MATQTVEDNSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD IS N
Sbjct: 61 YNSSILLDGISMN 73

[Close]

BLAST of PI0010913 vs. ExPASy Swiss-Prot
Match: Q9XQR3 (Photosystem II reaction center protein H OS=Pisum sativum OX=3888 GN=psbH PE=1 SV=3)

HSP 1 Score: 109.0 bits (271), Expect = 2.3e-23
Identity = 53/73 (72.60%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+++SSRSGPR+T V DLLKPLN +YGKVA GWGTTPLMG+AM LF +FL II EI
Sbjct: 1  MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGIAMALFAVFLSIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS +LLD+IS N
Sbjct: 61 YNSSLLLDQISMN 73

[Close]

BLAST of PI0010913 vs. ExPASy Swiss-Prot
Match: Q49KW9 (Photosystem II reaction center protein H OS=Eucalyptus globulus subsp. globulus OX=71271 GN=psbH PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-23
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT++ SSRSGPR+T+V DLLKPLN +YGKVA GWGTTPLMGVAM LF +FL II EI
Sbjct: 1  MATQTVEGSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS +LLD IS N
Sbjct: 61 YNSSVLLDGISMN 73

[Close]

BLAST of PI0010913 vs. ExPASy Swiss-Prot
Match: Q7FNS3 (Photosystem II reaction center protein H OS=Atropa belladonna OX=33113 GN=psbH PE=3 SV=3)

HSP 1 Score: 108.2 bits (269), Expect = 3.9e-23
Identity = 54/73 (73.97%), Postives = 61/73 (83.56%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+++SSRSGPR+T V DLLKPLN +YGKVA GWGTTPLMGVAM LF +FL II EI
Sbjct: 1  MATQTVENSSRSGPRRTAVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS +LLD IS N
Sbjct: 61 YNSSVLLDGISMN 73

[Close]

BLAST of PI0010913 vs. ExPASy TrEMBL
Match: A0A1P8C7S9 (Photosystem II reaction center protein H OS=Cucumis x hytivus OX=442738 GN=psbH PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+DDSSRSGPR+TVV DLLKPLN +YGKVA GWGTTPLMGVAMGLFTIFLCII EI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFTIFLCIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD ISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of PI0010913 vs. ExPASy TrEMBL
Match: A0A4Y5RCX7 (Photosystem II reaction center protein H OS=Cucumis hystrix OX=396994 GN=psbH PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.5e-25
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+DDSSRSGPR+TVV DLLKPLN +YGKVA GWGTTPLMGVAMGLFTIFLCII EI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFTIFLCIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD ISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of PI0010913 vs. ExPASy TrEMBL
Match: A0A1S4EU35 (Photosystem II reaction center protein H OS=Cucumis melo OX=3656 GN=psbH PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.7e-25
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+DDSSRSGPR+TVV DLLKPLN +YGKVA GWGTTPLMGVAMGLF IFLCII EI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD ISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of PI0010913 vs. ExPASy TrEMBL
Match: A0A249RZ75 (Photosystem II reaction center protein H OS=Cucumis melo var. cantalupensis OX=3658 GN=psbH PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.7e-25
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+DDSSRSGPR+TVV DLLKPLN +YGKVA GWGTTPLMGVAMGLF IFLCII EI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD ISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of PI0010913 vs. ExPASy TrEMBL
Match: A0A286NFZ2 (Photosystem II reaction center protein H OS=Cucumis melo var. flexuosus OX=1120798 GN=psbH PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 9.7e-25
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+DDSSRSGPR+TVV DLLKPLN +YGKVA GWGTTPLMGVAMGLF IFLCII EI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD ISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of PI0010913 vs. NCBI nr
Match: YP_009346513.1 (photosystem II phosphoprotein [Cucumis x hytivus] >AOW71124.1 photosystem II phosphoprotein [Cucumis x hytivus] >QCY72871.1 PsbH [Cucumis hystrix])

HSP 1 Score: 124.0 bits (310), Expect = 5.3e-25
Identity = 63/73 (86.30%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+DDSSRSGPR+TVV DLLKPLN +YGKVA GWGTTPLMGVAMGLFTIFLCII EI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFTIFLCIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD ISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of PI0010913 vs. NCBI nr
Match: YP_004841812.1 (photosystem II phosphoprotein [Cucumis melo subsp. melo] >YP_009860102.1 photosystem II phosphoprotein [Cucumis melo subsp. agrestis] >ASY96598.1 photosystem II protein H [Cucumis melo var. conomon] >ASY96685.1 photosystem II protein H [Cucumis melo var. makuwa] >ASY96772.1 photosystem II protein H [Cucumis melo var. momordica] >ASY96859.1 photosystem II protein H [Cucumis melo var. dudaim] >ASY96946.1 photosystem II protein H [Cucumis melo var. cantalupo] >ASY97120.1 photosystem II protein H [Cucumis melo var. inodorus] >ASY97294.1 photosystem II protein H [Cucumis melo var. flexuosus] >QJF46413.1 photosystem II protein H [Cucumis melo])

HSP 1 Score: 122.1 bits (305), Expect = 2.0e-24
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+DDSSRSGPR+TVV DLLKPLN +YGKVA GWGTTPLMGVAMGLF IFLCII EI
Sbjct: 1  MATQTVDDSSRSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD ISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of PI0010913 vs. NCBI nr
Match: YP_009326018.1 (photosystem II protein H [Citrullus lanatus] >YP_009348060.1 photosystem II protein H [Citrullus mucosospermus] >YP_009420823.1 photosystem II protein H [Citrullus colocynthis] >YP_009431585.1 photosystem II protein H [Citrullus amarus] >YP_009431671.1 photosystem II protein H [Citrullus rehmii] >YP_009456175.1 photosystem II protein H [Lagenaria siceraria] >YP_010131123.1 photosystem II phosphoprotein [Benincasa hispida] >APW82491.1 photosystem II protein H [Citrullus lanatus subsp. vulgaris] >QNM38560.1 photosystem II phosphoprotein [Lagenaria siceraria var. microcarpa] >QZL38622.1 photosystem II subunit H [Citrullus naudinianus] >QZL38710.1 photosystem II subunit H [Citrullus ecirrhosus] >AHM88720.1 photosystem II phosphoprotein [Lagenaria siceraria])

HSP 1 Score: 121.7 bits (304), Expect = 2.6e-24
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+DDSSRSGPR+T+V DLLKPLN +YGKVA GWGTTPLMGVAMGLF IFLCII EI
Sbjct: 1  MATQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD ISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of PI0010913 vs. NCBI nr
Match: AHM91195.1 (photosystem II phosphoprotein [Lagenaria siceraria])

HSP 1 Score: 121.3 bits (303), Expect = 3.4e-24
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+DDSSRSGPR+T+V DLLKPLN +YGKVA GWGTTPLMGVAMGLF IFLCII EI
Sbjct: 1  MXTQTVDDSSRSGPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD ISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of PI0010913 vs. NCBI nr
Match: QHB75993.1 (photosystem II protein H [Cucumis melo subsp. melo])

HSP 1 Score: 120.9 bits (302), Expect = 4.5e-24
Identity = 61/73 (83.56%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT+DDSS+SGPR+TVV DLLKPLN +YGKVA GWGTTPLMGVAMGLF IFLCII EI
Sbjct: 1  MATQTVDDSSKSGPRRTVVGDLLKPLNSEYGKVAPGWGTTPLMGVAMGLFAIFLCIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS ILLD ISSN
Sbjct: 61 YNSSILLDGISSN 73

[Close]

BLAST of PI0010913 vs. TAIR 10
Match: ATCG00710.1 (photosystem II reaction center protein H )

HSP 1 Score: 106.7 bits (265), Expect = 8.1e-24
Identity = 54/73 (73.97%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 1  MTTQTIDDSSRSGPRQTVVEDLLKPLNLKYGKVAFGWGTTPLMGVAMGLFTIFLCIISEI 60
          M TQT++DSSRSGPR T V  LLKPLN +YGKVA GWGTTPLMGVAM LF +FL II EI
Sbjct: 1  MATQTVEDSSRSGPRSTTVGKLLKPLNSEYGKVAPGWGTTPLMGVAMALFAVFLSIILEI 60

Query: 61 YNSFILLDEISSN 74
          YNS +LLD IS N
Sbjct: 61 YNSSVLLDGISVN 73

The following BLAST results are available for this feature:

BLAST of PI0010913 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZI9	2.9e-26	82.19	Photosystem II reaction center protein H OS=Cucumis sativus OX=3659 GN=psbH PE=3...	[more]
Q2PMQ6	4.6e-24	78.08	Photosystem II reaction center protein H OS=Glycine max OX=3847 GN=psbH PE=3 SV=...	[more]
Q9XQR3	2.3e-23	72.60	Photosystem II reaction center protein H OS=Pisum sativum OX=3888 GN=psbH PE=1 S...	[more]
Q49KW9	3.0e-23	73.97	Photosystem II reaction center protein H OS=Eucalyptus globulus subsp. globulus ...	[more]
Q7FNS3	3.9e-23	73.97	Photosystem II reaction center protein H OS=Atropa belladonna OX=33113 GN=psbH P...	[more]

BLAST of PI0010913 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1P8C7S9	2.5e-25	86.30	Photosystem II reaction center protein H OS=Cucumis x hytivus OX=442738 GN=psbH ...	[more]
A0A4Y5RCX7	2.5e-25	86.30	Photosystem II reaction center protein H OS=Cucumis hystrix OX=396994 GN=psbH PE...	[more]
A0A1S4EU35	9.7e-25	84.93	Photosystem II reaction center protein H OS=Cucumis melo OX=3656 GN=psbH PE=3 SV...	[more]
A0A249RZ75	9.7e-25	84.93	Photosystem II reaction center protein H OS=Cucumis melo var. cantalupensis OX=3...	[more]
A0A286NFZ2	9.7e-25	84.93	Photosystem II reaction center protein H OS=Cucumis melo var. flexuosus OX=11207...	[more]

BLAST of PI0010913 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009346513.1	5.3e-25	86.30	photosystem II phosphoprotein [Cucumis x hytivus] >AOW71124.1 photosystem II pho...	[more]
YP_004841812.1	2.0e-24	84.93	photosystem II phosphoprotein [Cucumis melo subsp. melo] >YP_009860102.1 photosy...	[more]
YP_009326018.1	2.6e-24	83.56	photosystem II protein H [Citrullus lanatus] >YP_009348060.1 photosystem II prot...	[more]
AHM91195.1	3.4e-24	83.56	photosystem II phosphoprotein [Lagenaria siceraria]	[more]
QHB75993.1	4.5e-24	83.56	photosystem II protein H [Cucumis melo subsp. melo]	[more]

BLAST of PI0010913 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00710.1	8.1e-24	73.97	photosystem II reaction center protein H	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001056	Photosystem II reaction centre protein H	PFAM	PF00737	PsbH	coord: 16..67 e-value: 2.2E-24 score: 84.9
IPR001056	Photosystem II reaction centre protein H	PANTHER	PTHR34469	PHOTOSYSTEM II REACTION CENTER PROTEIN H	coord: 1..72
IPR036863	Photosystem II reaction centre protein H superfamily	GENE3D	1.20.5.880	Photosystem II reaction center protein H	coord: 1..63 e-value: 3.6E-32 score: 111.8
IPR036863	Photosystem II reaction centre protein H superfamily	SUPERFAMILY	161025	Photosystem II 10 kDa phosphoprotein PsbH	coord: 14..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010913.1	PI0010913.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0050821	protein stabilization
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0042301	phosphate ion binding