PI0010911 (gene) Melon (PI 482460) v1

Overview
NamePI0010911
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr08: 7002913 .. 7003414 (-)
RNA-Seq ExpressionPI0010911
SyntenyPI0010911
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAAATATTCCAAGTCATCGCAGAAATGTGCGGGCTGTCGTGTAGTGGGTTCAGTTGGAACGACGAAGTGAAGTGCATCATCGCTGAGAAGGAGTTGTTCGACAATTGGGTAAAGGTAAGTTATTTATTATGAAAGTAAGTTATTTGTTTATAAAAGAAAAAATTGACGATTTATTTTAAAACTTCAACAGAGTCATTCTGCTGCCAAGGGCCTCCTAAACAAGCCATTTCATCATTACGATGATATGTGCTACGTATTTGGAAAAGATCGTGCGACGGGAGCTCGCGTGAAGACATTCGCTAATGGGGGGTCAAATGTGCTTGGAGTGCTCGAGGGATTTTCCGATGATTATGGAAACTATATAGAGATCCCTATGATGTACAGTCAAGGACTAGACATGTCGCCTGATGACATTGCAGGTACACGATCCGGTCGCTCAAGTGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGAAAGTGGGGAGGCCAGTGGTAG

mRNA sequence

ATGAAGAAAATATTCCAAGTCATCGCAGAAATGTGCGGGCTGTCGTGTAGTGGGTTCAGTTGGAACGACGAAGTGAAGTGCATCATCGCTGAGAAGGAGTTGTTCGACAATTGGGTAAAGAGTCATTCTGCTGCCAAGGGCCTCCTAAACAAGCCATTTCATCATTACGATGATATGTGCTACGTATTTGGAAAAGATCGTGCGACGGGAGCTCGCGTGAAGACATTCGCTAATGGGGGGTCAAATGTGCTTGGAGTGCTCGAGGGATTTTCCGATGATTATGGAAACTATATAGAGATCCCTATGATGTACAGTCAAGGACTAGACATGTCGCCTGATGACATTGCAGGTACACGATCCGGTCGCTCAAGTGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGAAAGTGGGGAGGCCAGTGGTAG

Coding sequence (CDS)

ATGAAGAAAATATTCCAAGTCATCGCAGAAATGTGCGGGCTGTCGTGTAGTGGGTTCAGTTGGAACGACGAAGTGAAGTGCATCATCGCTGAGAAGGAGTTGTTCGACAATTGGGTAAAGAGTCATTCTGCTGCCAAGGGCCTCCTAAACAAGCCATTTCATCATTACGATGATATGTGCTACGTATTTGGAAAAGATCGTGCGACGGGAGCTCGCGTGAAGACATTCGCTAATGGGGGGTCAAATGTGCTTGGAGTGCTCGAGGGATTTTCCGATGATTATGGAAACTATATAGAGATCCCTATGATGTACAGTCAAGGACTAGACATGTCGCCTGATGACATTGCAGGTACACGATCCGGTCGCTCAAGTGAGGGTAGGACTGGTTCAAGCGGATCGAAGAGAAAGTGGGGAGGCCAGTGGTAG

Protein sequence

MKKIFQVIAEMCGLSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMCYVFGKDRATGARVKTFANGGSNVLGVLEGFSDDYGNYIEIPMMYSQGLDMSPDDIAGTRSGRSSEGRTGSSGSKRKWGGQW
Homology
BLAST of PI0010911 vs. ExPASy TrEMBL
Match: A0A5A7VBC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1290G00070 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.8e-41
Identity = 87/139 (62.59%), Postives = 103/139 (74.10%), Query Frame = 0

Query: 1   MKKIFQVIAEMCGLSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMC 60
           MK++F  + EMCG  CSGF WNDE KCI+AEKE+FD+WVKSH AAKGLLNK F HYD++ 
Sbjct: 44  MKRMFHALVEMCGPMCSGFGWNDENKCIVAEKEVFDDWVKSHPAAKGLLNKSFFHYDELS 103

Query: 61  YVFGKDRATGARVKTFANGGSNVLGVLEGFSDDYGNYIEIPMMYSQGLDMSPDDIAGTRS 120
           YVFGKDRATG RV++FAN  SN     + F+ D     + P MYSQGL+MSPDD+ GTR+
Sbjct: 104 YVFGKDRATGDRVESFANVRSNDPAEYDAFATDAVPDTDFPPMYSQGLNMSPDDLMGTRT 163

Query: 121 GRSSEGRTGSSGSKRKWGG 140
            R SE R  SSGSKRK  G
Sbjct: 164 ARVSERRNVSSGSKRKRAG 182

BLAST of PI0010911 vs. ExPASy TrEMBL
Match: A0A5A7U308 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold88G00120 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.4e-40
Identity = 88/141 (62.41%), Postives = 108/141 (76.60%), Query Frame = 0

Query: 1   MKKIFQVIAEMCGLSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMC 60
           +K+ FQ IAEM GL+CSGF WNDE KCI+AEKELFDNWV+SH  AKGLLNKPF +YD++ 
Sbjct: 74  LKRTFQAIAEMRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPEAKGLLNKPFPYYDELT 133

Query: 61  YVFGKDRATGARVKTFANGGSNVLG-VLEGFSDDYGNYIEIPMMYSQGLDMSPDDIAGTR 120
           YVFG+DRATG   +TFA+ GSN  G   + F    GN  + P++YSQG+D+S DD+  +R
Sbjct: 134 YVFGRDRATGRFAETFADVGSNEPGDGYDRFDMGDGNE-DFPLVYSQGVDISQDDVRASR 193

Query: 121 SGRSSEGRTGSSGSKRKWGGQ 141
             R+SEGRTGSSGSKRK G Q
Sbjct: 194 PSRASEGRTGSSGSKRKRGSQ 213

BLAST of PI0010911 vs. ExPASy TrEMBL
Match: A0A5A7SI64 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001320 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.4e-40
Identity = 88/141 (62.41%), Postives = 107/141 (75.89%), Query Frame = 0

Query: 1   MKKIFQVIAEMCGLSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMC 60
           +K+ FQ IAEM GL+CSGF WNDE KCI+AEKELFDNWV+SH AAKGLLNKPF +YD++ 
Sbjct: 74  LKRTFQAIAEMRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELT 133

Query: 61  YVFGKDRATGARVKTFANGGSNVL-GVLEGFSDDYGNYIEIPMMYSQGLDMSPDDIAGTR 120
           YVFG+DRATG   +TFA+ GSN   G  + F    GN  + P +YSQG+D+S DD+  +R
Sbjct: 134 YVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSQGIDLSQDDVRASR 193

Query: 121 SGRSSEGRTGSSGSKRKWGGQ 141
             R+SEGRT SSGSKRK G Q
Sbjct: 194 PSRASEGRTRSSGSKRKRGSQ 213

BLAST of PI0010911 vs. ExPASy TrEMBL
Match: A0A5D3C8P0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00590 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.4e-40
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0

Query: 1   MKKIFQVIAEMCGLSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMC 60
           +K+ FQVIAEM G +CSGF WNDE KCIIAEKELFDNWV+SH  AKGLLNKPF +YD++ 
Sbjct: 74  LKRTFQVIAEMRGPTCSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFPYYDELT 133

Query: 61  YVFGKDRATGARVKTFANGGSNVLGVLEGFSDDYGNYIEIPMMYSQGLDMSPDDIAGTRS 120
           YVFG+DRATG  V+TFA+  SN  G      D      E P +YSQG+D+S DD+  +R 
Sbjct: 134 YVFGRDRATGRFVETFADVRSNEPGGGYDRFDMRDENEEFPPVYSQGIDLSQDDVRASRP 193

Query: 121 GRSSEGRTGSSGSKRKWGGQ 141
            R+SEGRTGSSGSKRK G Q
Sbjct: 194 SRASEGRTGSSGSKRKRGSQ 213

BLAST of PI0010911 vs. ExPASy TrEMBL
Match: A0A5A7VES2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G002250 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.4e-40
Identity = 89/141 (63.12%), Postives = 107/141 (75.89%), Query Frame = 0

Query: 1   MKKIFQVIAEMCGLSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMC 60
           +K+ FQ IAEM G +CSGF WNDE KCIIAEKELFDNWV+SH AAKGLLNKPF +YD++ 
Sbjct: 74  LKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNWVRSHPAAKGLLNKPFPYYDELT 133

Query: 61  YVFGKDRATGARVKTFANGGSNVL-GVLEGFSDDYGNYIEIPMMYSQGLDMSPDDIAGTR 120
           YVFG+DRATG   +TFA+ GSN   G  + F    GN  + P +YSQG+D+S DD+  +R
Sbjct: 134 YVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSQGVDISQDDVRASR 193

Query: 121 SGRSSEGRTGSSGSKRKWGGQ 141
             R+SEGRTGSSGSKRK G Q
Sbjct: 194 PSRASEGRTGSSGSKRKRGSQ 213

BLAST of PI0010911 vs. NCBI nr
Match: KAA0063726.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 7.7e-41
Identity = 87/139 (62.59%), Postives = 103/139 (74.10%), Query Frame = 0

Query: 1   MKKIFQVIAEMCGLSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMC 60
           MK++F  + EMCG  CSGF WNDE KCI+AEKE+FD+WVKSH AAKGLLNK F HYD++ 
Sbjct: 44  MKRMFHALVEMCGPMCSGFGWNDENKCIVAEKEVFDDWVKSHPAAKGLLNKSFFHYDELS 103

Query: 61  YVFGKDRATGARVKTFANGGSNVLGVLEGFSDDYGNYIEIPMMYSQGLDMSPDDIAGTRS 120
           YVFGKDRATG RV++FAN  SN     + F+ D     + P MYSQGL+MSPDD+ GTR+
Sbjct: 104 YVFGKDRATGDRVESFANVRSNDPAEYDAFATDAVPDTDFPPMYSQGLNMSPDDLMGTRT 163

Query: 121 GRSSEGRTGSSGSKRKWGG 140
            R SE R  SSGSKRK  G
Sbjct: 164 ARVSERRNVSSGSKRKRAG 182

BLAST of PI0010911 vs. NCBI nr
Match: KAA0050293.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 2.9e-40
Identity = 88/141 (62.41%), Postives = 108/141 (76.60%), Query Frame = 0

Query: 1   MKKIFQVIAEMCGLSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMC 60
           +K+ FQ IAEM GL+CSGF WNDE KCI+AEKELFDNWV+SH  AKGLLNKPF +YD++ 
Sbjct: 74  LKRTFQAIAEMRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPEAKGLLNKPFPYYDELT 133

Query: 61  YVFGKDRATGARVKTFANGGSNVLG-VLEGFSDDYGNYIEIPMMYSQGLDMSPDDIAGTR 120
           YVFG+DRATG   +TFA+ GSN  G   + F    GN  + P++YSQG+D+S DD+  +R
Sbjct: 134 YVFGRDRATGRFAETFADVGSNEPGDGYDRFDMGDGNE-DFPLVYSQGVDISQDDVRASR 193

Query: 121 SGRSSEGRTGSSGSKRKWGGQ 141
             R+SEGRTGSSGSKRK G Q
Sbjct: 194 PSRASEGRTGSSGSKRKRGSQ 213

BLAST of PI0010911 vs. NCBI nr
Match: KAA0025858.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-39
Identity = 88/141 (62.41%), Postives = 107/141 (75.89%), Query Frame = 0

Query: 1   MKKIFQVIAEMCGLSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMC 60
           +K+ FQ IAEM GL+CSGF WNDE KCI+AEKELFDNWV+SH AAKGLLNKPF +YD++ 
Sbjct: 74  LKRTFQAIAEMRGLACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKGLLNKPFPYYDELT 133

Query: 61  YVFGKDRATGARVKTFANGGSNVL-GVLEGFSDDYGNYIEIPMMYSQGLDMSPDDIAGTR 120
           YVFG+DRATG   +TFA+ GSN   G  + F    GN  + P +YSQG+D+S DD+  +R
Sbjct: 134 YVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNE-DFPPVYSQGIDLSQDDVRASR 193

Query: 121 SGRSSEGRTGSSGSKRKWGGQ 141
             R+SEGRT SSGSKRK G Q
Sbjct: 194 PSRASEGRTRSSGSKRKRGSQ 213

BLAST of PI0010911 vs. NCBI nr
Match: KAA0049911.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-39
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0

Query: 1   MKKIFQVIAEMCGLSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMC 60
           +K+ FQVIAEM G +CSGF WNDE KCIIAEKELFDNWV+SH  AKGLLNKPF +YD++ 
Sbjct: 74  LKRTFQVIAEMRGPTCSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFPYYDELT 133

Query: 61  YVFGKDRATGARVKTFANGGSNVLGVLEGFSDDYGNYIEIPMMYSQGLDMSPDDIAGTRS 120
           YVFG+DRATG  V+TFA+  SN  G      D      E P +YSQG+D+S DD+  +R 
Sbjct: 134 YVFGRDRATGRFVETFADVRSNEPGGGYDRFDMRDENEEFPPVYSQGIDLSQDDVRASRP 193

Query: 121 GRSSEGRTGSSGSKRKWGGQ 141
            R+SEGRTGSSGSKRK G Q
Sbjct: 194 SRASEGRTGSSGSKRKRGSQ 213

BLAST of PI0010911 vs. NCBI nr
Match: TYK07652.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-39
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0

Query: 1   MKKIFQVIAEMCGLSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMC 60
           +K+ FQVIAEM G +CSGF WNDE KCIIAEKELFDNWV+SH  AKGLLNKPF +YD++ 
Sbjct: 74  LKRTFQVIAEMRGPTCSGFGWNDEEKCIIAEKELFDNWVRSHPTAKGLLNKPFPYYDELT 133

Query: 61  YVFGKDRATGARVKTFANGGSNVLGVLEGFSDDYGNYIEIPMMYSQGLDMSPDDIAGTRS 120
           YVFG+DRATG  V+TFA+  SN  G      D      E P +YSQG+D+S DD+  +R 
Sbjct: 134 YVFGRDRATGRFVETFADVRSNEPGGGYDRFDMRDENEEFPPVYSQGIDLSQDDVRASRP 193

Query: 121 GRSSEGRTGSSGSKRKWGGQ 141
            R+SEGRTGSSGSKRK G Q
Sbjct: 194 SRASEGRTGSSGSKRKRGSQ 213

BLAST of PI0010911 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-05
Identity = 16/57 (28.07%), Postives = 35/57 (61.40%), Query Frame = 0

Query: 14  LSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMCYVFGKDRATG 71
           L  +GFSW+     +IA+ ++++ ++++H  A+    K    Y ++C++FGK+ + G
Sbjct: 396 LEQNGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKETSDG 452

BLAST of PI0010911 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 7.3e-05
Identity = 14/51 (27.45%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 14  LSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMCYVFG 65
           L   GF+W++E + + A+  ++ +++K+H  A+  + +P  +Y D+C + G
Sbjct: 255 LRSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

BLAST of PI0010911 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 44.7 bits (104), Expect = 7.3e-05
Identity = 14/51 (27.45%), Postives = 32/51 (62.75%), Query Frame = 0

Query: 14  LSCSGFSWNDEVKCIIAEKELFDNWVKSHSAAKGLLNKPFHHYDDMCYVFG 65
           L   GF+W++E + + A+  ++ +++K+H  A+  + +P  +Y D+C + G
Sbjct: 255 LRSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VBC53.8e-4162.59Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U3081.4e-4062.41Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SI645.4e-4062.41Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C8P05.4e-4062.86Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VES25.4e-4063.12Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0063726.17.7e-4162.59retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0050293.12.9e-4062.41retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0025858.11.1e-3962.41retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049911.11.1e-3962.86retrotransposon protein [Cucumis melo var. makuwa][more]
TYK07652.11.1e-3962.86retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT2G24960.21.9e-0528.07unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT4G02210.17.3e-0527.45unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT4G02210.27.3e-0527.45unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..141
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 1..82

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0010911.1PI0010911.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane