PI0010862 (gene) Melon (PI 482460) v1

Overview


Name	PI0010862
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr10: 14348187 .. 14348681 (-)
RNA-Seq Expression	PI0010862
Synteny	PI0010862

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCCTTTGAGGTTGTAAAGAATATTTGGGAACAACTGTCAAAACCACCAAAATGTGGAATTATAATCAAAGAAAATCCTGTAATCAACGAACACATTTCGTCCTCTGAACACTCAAGTGAGGAGACGTCACACCCAAATATAATGTCAGTTATGGTGGCTGACGTGGATACAAGTGAAGACAAAATGACAGAGCTTGAAAAGAAGATTAACATGCTCATGAAGACAATTGAAGAAAGGAATTATGAGATTGCATCTTTCAAGAATCACATCGAGAGTCGTGACGCTGCTGAATCAAGTCATACACATACTGTCAAGAATACTGACCTGGAAGGCAATTATGCAATAAAGTCAACCACAACATTTGACCTCAATTGCATTGTTGTCTGTTCAGTAGTTGTAGGAGATGATAGCAAACTCCACCAAAACTCAACGTTGTCTATCATATCCAACCCAATGCTGGGTTGCCCTTACCATCAAATTATTTTGTAG

mRNA sequence

ATGCCACCCTTTGAGGTTGTAAAGAATATTTGGGAACAACTGTCAAAACCACCAAAATGTGGAATTATAATCAAAGAAAATCCTGTAATCAACGAACACATTTCGTCCTCTGAACACTCAAGTGAGGAGACGTCACACCCAAATATAATGTCAGTTATGGTGGCTGACGTGGATACAAGTGAAGACAAAATGACAGAGCTTGAAAAGAAGATTAACATGCTCATGAAGACAATTGAAGAAAGGAATTATGAGATTGCATCTTTCAAGAATCACATCGAGAGTCGTGACGCTGCTGAATCAAGTCATACACATACTGTCAAGAATACTGACCTGGAAGGCAATTATGCAATAAAGTCAACCACAACATTTGACCTCAATTGCATTGTTGTCTGTTCAGTAGTTGTAGGAGATGATAGCAAACTCCACCAAAACTCAACGTTGTCTATCATATCCAACCCAATGCTGGGTTGCCCTTACCATCAAATTATTTTGTAG

Coding sequence (CDS)

ATGCCACCCTTTGAGGTTGTAAAGAATATTTGGGAACAACTGTCAAAACCACCAAAATGTGGAATTATAATCAAAGAAAATCCTGTAATCAACGAACACATTTCGTCCTCTGAACACTCAAGTGAGGAGACGTCACACCCAAATATAATGTCAGTTATGGTGGCTGACGTGGATACAAGTGAAGACAAAATGACAGAGCTTGAAAAGAAGATTAACATGCTCATGAAGACAATTGAAGAAAGGAATTATGAGATTGCATCTTTCAAGAATCACATCGAGAGTCGTGACGCTGCTGAATCAAGTCATACACATACTGTCAAGAATACTGACCTGGAAGGCAATTATGCAATAAAGTCAACCACAACATTTGACCTCAATTGCATTGTTGTCTGTTCAGTAGTTGTAGGAGATGATAGCAAACTCCACCAAAACTCAACGTTGTCTATCATATCCAACCCAATGCTGGGTTGCCCTTACCATCAAATTATTTTGTAG

Protein sequence

MPPFEVVKNIWEQLSKPPKCGIIIKENPVINEHISSSEHSSEETSHPNIMSVMVADVDTSEDKMTELEKKINMLMKTIEERNYEIASFKNHIESRDAAESSHTHTVKNTDLEGNYAIKSTTTFDLNCIVVCSVVVGDDSKLHQNSTLSIISNPMLGCPYHQIIL

Homology

[Close]

BLAST of PI0010862 vs. ExPASy TrEMBL
Match: A0A5D3C4W1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83G00920 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.1e-41
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 2   PPFEVVKNIWEQLSKPPKCGIIIKENPVINEHISSSEHSSEETSHPNIMSVMVADVDTSE 61
           PPFEV KNIWEQ+SKPPK GI+IKENP I+EH S SEHSSEE +HPNIMSVMV DVDTSE
Sbjct: 34  PPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSFSEHSSEEMAHPNIMSVMVTDVDTSE 93

Query: 62  DKMTELEKKINMLMKTIEERNYEIASFKNHIESRDAAESSHTHTVKNTD 111
           ++M ELEKK+NMLMK +EER+YEIAS KNHIESRDAAESSH HTVKNTD
Sbjct: 94  NRMVELEKKVNMLMKVVEERDYEIASLKNHIESRDAAESSHKHTVKNTD 142

[Close]

BLAST of PI0010862 vs. ExPASy TrEMBL
Match: A0A5A7SI89 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00380 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.4e-39
Identity = 84/110 (76.36%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 1   MPPFEVVKNIWEQLSKPPKCGIIIKENPVINEHISSSEHSSEETSHPNIMSVMVADVDTS 60
           MPPFEV KNIWEQ+SKPPKCGI+IKENP I+EH S SE S+EE   PNIMSVMV DVDTS
Sbjct: 1   MPPFEVAKNIWEQISKPPKCGIVIKENPAIDEHNSLSERSNEEVQQPNIMSVMVTDVDTS 60

Query: 61  EDKMTELEKKINMLMKTIEERNYEIASFKNHIESRDAAESSHTHTVKNTD 111
           ED+M ELEKK+N+LMK +EER++EIA  KNHIESRDAAESSHTHT+KN +
Sbjct: 61  EDRMAELEKKVNVLMKEVEERDFEIALLKNHIESRDAAESSHTHTIKNAN 110

[Close]

BLAST of PI0010862 vs. ExPASy TrEMBL
Match: A0A5A7T6D4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G001460 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 1.8e-39
Identity = 86/110 (78.18%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MPPFEVVKNIWEQLSKPPKCGIIIKENPVINEHISSSEHSSEETSHPNIMSVMVADVDTS 60
           MPPF+V KNIWEQ SKPPK GI+IKENPVI+EH SSSE S+EET HPNIMSV+  DVDTS
Sbjct: 2   MPPFKVPKNIWEQFSKPPKGGIVIKENPVIDEHNSSSERSNEETPHPNIMSVIATDVDTS 61

Query: 61  EDKMTELEKKINMLMKTIEERNYEIASFKNHIESRDAAESSHTHTVKNTD 111
           +++MTELEKKINMLMK +EER+YEIAS KNHIESRDAAESSHTHT  N +
Sbjct: 62  DNRMTELEKKINMLMKAVEERDYEIASLKNHIESRDAAESSHTHTANNIE 111

[Close]

BLAST of PI0010862 vs. ExPASy TrEMBL
Match: A0A5D3CD55 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G00850 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.4e-39
Identity = 86/109 (78.90%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 2   PPFEVVKNIWEQLSKPPKCGIIIKENPVINEHISSSEHSSEETSHPNIMSVMVADVDTSE 61
           PPFEV KNIWEQ+SKPPK GI+IKENP I+EH SSS+ SSEE  HPNIMSVMV +VDTSE
Sbjct: 34  PPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSE 93

Query: 62  DKMTELEKKINMLMKTIEERNYEIASFKNHIESRDAAESSHTHTVKNTD 111
           ++MTELEKK+NMLMK +EER+YEIA  KNHIES DAAESSH HTVKNTD
Sbjct: 94  NRMTELEKKVNMLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTD 142

[Close]

BLAST of PI0010862 vs. ExPASy TrEMBL
Match: A0A5A7VAV4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00190 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 2.4e-39
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MPPFEVVKNIWEQLSKPPKCGIIIKENPVINEHISSSEHSSEETSHPNIMSVMVADVDTS 60
           MPPFEV KNIWEQ+SKPPK GI+IKEN  I+EH SSS+ SSEE  HPNIMSVMVA+VDTS
Sbjct: 33  MPPFEVAKNIWEQISKPPKGGIVIKENHAIDEHYSSSKPSSEEMPHPNIMSVMVANVDTS 92

Query: 61  EDKMTELEKKINMLMKTIEERNYEIASFKNHIESRDAAESSHTHTVKNTD 111
           E++M ELEKK+NMLMK +EER+YEIA  KNHIESRDAAESSH HTVKNTD
Sbjct: 93  ENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTD 142

[Close]

BLAST of PI0010862 vs. NCBI nr
Match: KAA0041883.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK05406.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 2.4e-41
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 2   PPFEVVKNIWEQLSKPPKCGIIIKENPVINEHISSSEHSSEETSHPNIMSVMVADVDTSE 61
           PPFEV KNIWEQ+SKPPK GI+IKENP I+EH S SEHSSEE +HPNIMSVMV DVDTSE
Sbjct: 34  PPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSFSEHSSEEMAHPNIMSVMVTDVDTSE 93

Query: 62  DKMTELEKKINMLMKTIEERNYEIASFKNHIESRDAAESSHTHTVKNTD 111
           ++M ELEKK+NMLMK +EER+YEIAS KNHIESRDAAESSH HTVKNTD
Sbjct: 94  NRMVELEKKVNMLMKVVEERDYEIASLKNHIESRDAAESSHKHTVKNTD 142

[Close]

BLAST of PI0010862 vs. NCBI nr
Match: KAA0025354.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 2.9e-39
Identity = 84/110 (76.36%), Postives = 96/110 (87.27%), Query Frame = 0


Query: 1   MPPFEVVKNIWEQLSKPPKCGIIIKENPVINEHISSSEHSSEETSHPNIMSVMVADVDTS 60
           MPPFEV KNIWEQ+SKPPKCGI+IKENP I+EH S SE S+EE   PNIMSVMV DVDTS
Sbjct: 1   MPPFEVAKNIWEQISKPPKCGIVIKENPAIDEHNSLSERSNEEVQQPNIMSVMVTDVDTS 60

Query: 61  EDKMTELEKKINMLMKTIEERNYEIASFKNHIESRDAAESSHTHTVKNTD 111
           ED+M ELEKK+N+LMK +EER++EIA  KNHIESRDAAESSHTHT+KN +
Sbjct: 61  EDRMAELEKKVNVLMKEVEERDFEIALLKNHIESRDAAESSHTHTIKNAN 110

[Close]

BLAST of PI0010862 vs. NCBI nr
Match: KAA0039052.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 3.8e-39
Identity = 86/110 (78.18%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MPPFEVVKNIWEQLSKPPKCGIIIKENPVINEHISSSEHSSEETSHPNIMSVMVADVDTS 60
           MPPF+V KNIWEQ SKPPK GI+IKENPVI+EH SSSE S+EET HPNIMSV+  DVDTS
Sbjct: 2   MPPFKVPKNIWEQFSKPPKGGIVIKENPVIDEHNSSSERSNEETPHPNIMSVIATDVDTS 61

Query: 61  EDKMTELEKKINMLMKTIEERNYEIASFKNHIESRDAAESSHTHTVKNTD 111
           +++MTELEKKINMLMK +EER+YEIAS KNHIESRDAAESSHTHT  N +
Sbjct: 62  DNRMTELEKKINMLMKAVEERDYEIASLKNHIESRDAAESSHTHTANNIE 111

[Close]

BLAST of PI0010862 vs. NCBI nr
Match: KAA0065303.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 4.9e-39
Identity = 87/110 (79.09%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 1   MPPFEVVKNIWEQLSKPPKCGIIIKENPVINEHISSSEHSSEETSHPNIMSVMVADVDTS 60
           MPPFEV KNIWEQ+SKPPK GI+IKEN  I+EH SSS+ SSEE  HPNIMSVMVA+VDTS
Sbjct: 33  MPPFEVAKNIWEQISKPPKGGIVIKENHAIDEHYSSSKPSSEEMPHPNIMSVMVANVDTS 92

Query: 61  EDKMTELEKKINMLMKTIEERNYEIASFKNHIESRDAAESSHTHTVKNTD 111
           E++M ELEKK+NMLMK +EER+YEIA  KNHIESRDAAESSH HTVKNTD
Sbjct: 93  ENRMAELEKKVNMLMKVVEERDYEIAFLKNHIESRDAAESSHKHTVKNTD 142

[Close]

BLAST of PI0010862 vs. NCBI nr
Match: TYK09793.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.8 bits (434), Expect = 4.9e-39
Identity = 86/109 (78.90%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 2   PPFEVVKNIWEQLSKPPKCGIIIKENPVINEHISSSEHSSEETSHPNIMSVMVADVDTSE 61
           PPFEV KNIWEQ+SKPPK GI+IKENP I+EH SSS+ SSEE  HPNIMSVMV +VDTSE
Sbjct: 34  PPFEVAKNIWEQISKPPKGGIVIKENPAIDEHYSSSQPSSEEMPHPNIMSVMVTNVDTSE 93

Query: 62  DKMTELEKKINMLMKTIEERNYEIASFKNHIESRDAAESSHTHTVKNTD 111
           ++MTELEKK+NMLMK +EER+YEIA  KNHIES DAAESSH HTVKNTD
Sbjct: 94  NRMTELEKKVNMLMKVVEERDYEIAFLKNHIESHDAAESSHKHTVKNTD 142

The following BLAST results are available for this feature:

BLAST of PI0010862 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010862 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C4W1	1.1e-41	81.65	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SI89	1.4e-39	76.36	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T6D4	1.8e-39	78.18	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CD55	2.4e-39	78.90	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VAV4	2.4e-39	79.09	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of PI0010862 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041883.1	2.4e-41	81.65	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK05406.1 ty3-gyp...	[more]
KAA0025354.1	2.9e-39	76.36	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0039052.1	3.8e-39	78.18	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0065303.1	4.9e-39	79.09	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK09793.1	4.9e-39	78.90	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0010862 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 57..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010862.1	PI0010862.1	mRNA