PI0010851 (gene) Melon (PI 482460) v1

Overview


Name	PI0010851
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	synaptotagmin-2-like
Location	chr05: 14500676 .. 14502555 (+)
RNA-Seq Expression	PI0010851
Synteny	PI0010851

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGCAATACCACTTGTTAAGAGGTCTTCTCATAATTCAGCTGAAAAATGAGATGCCTTGTTATACAGGCATGGGATTGAAGGAGACTCTCAGGTTAGACAAAAAATCTATAATTTTTCTTGTACAAACACCTTGGTTTTATGGGATGACAAGTTGAGTGCTGGATTAAAGTTGTTTTATAGAGTCTTGTGTTGTTTTTGCATTACATCAATTGTTTTTTGTGTTGTCTCTTACTATTTGATGAGATAAAGTGTTCAAAAGAAGCTTAAATTCTTAGAATTTTATTTGGGGCAAACATAATCAAGGACATGGATTTTTTTTATTAGAGTGTGCACAGGTGCTAATAAAAGCATTATGGTTGTTTTTTTTTCTGTCTGTAGGCTTGGAGTGATTGTTGGAAAGACTGAAAGCACTTCGTCTAGAATGAGAGCTGATCAAGTGGGTTTGATAGATAAGCAATGCAAAATCATTATATATATATATATATATATATATAAAGTAAGGACGGTCCTCCACCTCTGTATCTTTCCTTTCATTTATTGCCTATACCTTTGCGATATATGTCGTTCATTCTAATATTTTTCCAGTTTTAAATTCTTGTATCAACTGTTATGGAAGACATTAATACCATGATTGAGTTGATAACAAAGCTATTTTATTTTTTATATTTATTAGATAAGTCTTATGATGCTAAGAAAATTTTGAGTTGCAACTCATTGTCCTGATTGAGTTATAATATTTAAGAGGTTTAGGATTTGTGTGTAACTGTGAATGAATGAATGAAGCAAATTTTATTGTTTGTTAATTACAATGAATGAGACTTGTTGATTGCAACTTTAGTTGTTGCAACTTGCAACATATGGTGATCTTTGTGCACTTGCAACTTTTAATCGTTTAGAGGTTAAAGTTATTAATATTTGAATGAATATGGTGATTTTTGGTTGGAAAATGTTGTGTTACACTGTATGTAATCCCCAAATTTCCTTTCCTTTTCTCCCTTACCCACAAAAATAAACACCACCCCTCGTCGAAAGCCCCAAATACACCTACTTAAATGTATATAGTTGTAAATTGTTATTCACCTACTTATTTCTCTTCTATTATGTTGTTTGACTCTACAGCCCGATGTTGATTTTGGATTGAAATTGCTCGGTGCATATGCAATGTCCATCGCAAGGCTATATAGGTTTGTTCAGGTATACATTATTCTGTAGCGTGTTATATTTACAGACATTGTAAACAATTAATTTGATTCATGATATCGAACTAGTAAAAAGACTTCTCATCATCTCAGGAACTAATAAAAGATCAAGTTGCCAATATGTATCTATGGGCCAAGACCCTTGAAGTACCGATAATGGACCCTGCGAAGTAAGTTTTGTTTGTGTTATTTTTGTATTATGATCATGTTAGTTTTTGGTTCTCCGTTTGTAATTTTATTGTTTATCTTCTGTTTGGTTGTTAGAAGAGTGGAAACGTTGAAGGTTATAATGACTATGGAGCAATAGCTGATTCCCTCAAGTATTGTTTTGAACTTATTTTTATTTGTTTTTGTAATATATATGTTTGGATGTTTCAAATTCACATTATTACTTTGCCTCATCTTGAATCTGATAATTATATCCGCTTGCTAGCTTTAGTTTGCAAATGCATAAAAAACATATATATTTTTGGTATATATATGTTGTTTATTTTACTTTTTGTGGGTGTATTTTTTAAGATGTTTAATATATTGGAGCTTGGAGTTTTAATGATGCTATTTTCCATATTTCATGTCTCTATAGGTATGTGAGATTCATCAATGCCAGCTATGAAAGTGTTGGAGGCAGTTTCAGTTCAGGAAATAATATGTTTGGGAATGGTCATGATGTGTAA

mRNA sequence

ATGGGAAGGCAATACCACTTGTTAAGAGGTCTTCTCATAATTCAGCTGAAAAATGAGATGCCTTGTTATACAGGCATGGGATTGAAGGAGACTCTCAGGCTTGGAGTGATTGTTGGAAAGACTGAAAGCACTTCGTCTAGAATGAGAGCTGATCAACCCGATGTTGATTTTGGATTGAAATTGCTCGGTGCATATGCAATGTCCATCGCAAGGCTATATAGGTTTGTTCAGGAACTAATAAAAGATCAAGTTGCCAATATGTATCTATGGGCCAAGACCCTTGAAGTACCGATAATGGACCCTGCGAAGTATGTGAGATTCATCAATGCCAGCTATGAAAGTGTTGGAGGCAGTTTCAGTTCAGGAAATAATATGTTTGGGAATGGTCATGATGTGTAA

Coding sequence (CDS)

ATGGGAAGGCAATACCACTTGTTAAGAGGTCTTCTCATAATTCAGCTGAAAAATGAGATGCCTTGTTATACAGGCATGGGATTGAAGGAGACTCTCAGGCTTGGAGTGATTGTTGGAAAGACTGAAAGCACTTCGTCTAGAATGAGAGCTGATCAACCCGATGTTGATTTTGGATTGAAATTGCTCGGTGCATATGCAATGTCCATCGCAAGGCTATATAGGTTTGTTCAGGAACTAATAAAAGATCAAGTTGCCAATATGTATCTATGGGCCAAGACCCTTGAAGTACCGATAATGGACCCTGCGAAGTATGTGAGATTCATCAATGCCAGCTATGAAAGTGTTGGAGGCAGTTTCAGTTCAGGAAATAATATGTTTGGGAATGGTCATGATGTGTAA

Protein sequence

MGRQYHLLRGLLIIQLKNEMPCYTGMGLKETLRLGVIVGKTESTSSRMRADQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVRFINASYESVGGSFSSGNNMFGNGHDV

Homology

[Close]

BLAST of PI0010851 vs. ExPASy Swiss-Prot
Match: B6ETT4 (Synaptotagmin-2 OS=Arabidopsis thaliana OX=3702 GN=SYT2 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-16
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           D+P VDFGLKLLGA  M+I  LYRFVQE+IKDQVANMYLW KTL V IMDP+K ++
Sbjct: 201 DKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLWPKTLNVQIMDPSKAMK 256

[Close]

BLAST of PI0010851 vs. ExPASy Swiss-Prot
Match: Q9SKR2 (Synaptotagmin-1 OS=Arabidopsis thaliana OX=3702 GN=SYT1 PE=1 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-15
Identity = 42/56 (75.00%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           ++P VDFGLKL GA  MSI  LYRFVQE IKDQVANMYLW KTL VPI+DPAK  R
Sbjct: 201 EKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLWPKTLVVPILDPAKAFR 256

[Close]

BLAST of PI0010851 vs. ExPASy Swiss-Prot
Match: Q7XA06 (Synaptotagmin-3 OS=Arabidopsis thaliana OX=3702 GN=SYT3 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.0e-10
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMD 101
           ++P VDFGLK+LG   MSI  LYR+VQE IK QV++MY W + LE+PI+D
Sbjct: 201 EKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHWPQVLEIPILD 250

[Close]

BLAST of PI0010851 vs. ExPASy TrEMBL
Match: A0A4S4EIS7 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_023656 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-16
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 52  QPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           QP VDFGLKLLGA AMSI  LYRFVQELIKDQVANMYLW KTLEVPIMDPAK ++
Sbjct: 223 QPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMK 277

[Close]

BLAST of PI0010851 vs. ExPASy TrEMBL
Match: A0A5B6YHH5 (Putative synaptotagmin-2 OS=Davidia involucrata OX=16924 GN=Din_000569 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.9e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           ++P VDFGLKLLGA AMSI  LYRFVQELIKDQVANMYLW KTLEVPIMDPAK ++
Sbjct: 196 EKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMK 251

[Close]

BLAST of PI0010851 vs. ExPASy TrEMBL
Match: A0A5B6YHQ5 (Putative synaptotagmin-2 OS=Davidia involucrata OX=16924 GN=Din_000566 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.9e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           ++P VDFGLKLLGA AMSI  LYRFVQELIKDQVANMYLW KTLEVPIMDPAK ++
Sbjct: 201 EKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMK 256

[Close]

BLAST of PI0010851 vs. ExPASy TrEMBL
Match: A0A5J5ACN6 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_036120 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.9e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           ++P VDFGLKLLGA AMSI  LYRFVQELIKDQVANMYLW KTLEVPIMDPAK ++
Sbjct: 201 EKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMK 256

[Close]

BLAST of PI0010851 vs. ExPASy TrEMBL
Match: A0A7J7GUL2 (Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_020776 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.9e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           ++P VDFGLKLLGA AMSI  LYRFVQELIKDQVANMYLW KTLEVPIMDPAK ++
Sbjct: 201 EKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMK 256

[Close]

BLAST of PI0010851 vs. NCBI nr
Match: THG15796.1 (hypothetical protein TEA_023656 [Camellia sinensis var. sinensis])

HSP 1 Score: 95.1 bits (235), Expect = 4.7e-16
Identity = 47/55 (85.45%), Postives = 49/55 (89.09%), Query Frame = 0


Query: 52  QPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           QP VDFGLKLLGA AMSI  LYRFVQELIKDQVANMYLW KTLEVPIMDPAK ++
Sbjct: 223 QPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMK 277

[Close]

BLAST of PI0010851 vs. NCBI nr
Match: KAF5943134.1 (hypothetical protein HYC85_020776 [Camellia sinensis])

HSP 1 Score: 94.4 bits (233), Expect = 8.1e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           ++P VDFGLKLLGA AMSI  LYRFVQELIKDQVANMYLW KTLEVPIMDPAK ++
Sbjct: 201 EKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMK 256

[Close]

BLAST of PI0010851 vs. NCBI nr
Match: KAA8528765.1 (hypothetical protein F0562_036120 [Nyssa sinensis])

HSP 1 Score: 94.4 bits (233), Expect = 8.1e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           ++P VDFGLKLLGA AMSI  LYRFVQELIKDQVANMYLW KTLEVPIMDPAK ++
Sbjct: 201 EKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMK 256

[Close]

BLAST of PI0010851 vs. NCBI nr
Match: XP_028072967.1 (synaptotagmin-2-like isoform X2 [Camellia sinensis])

HSP 1 Score: 94.4 bits (233), Expect = 8.1e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           ++P VDFGLKLLGA AMSI  LYRFVQELIKDQVANMYLW KTLEVPIMDPAK ++
Sbjct: 201 EKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMK 256

[Close]

BLAST of PI0010851 vs. NCBI nr
Match: XP_028072961.1 (synaptotagmin-2-like isoform X1 [Camellia sinensis])

HSP 1 Score: 94.4 bits (233), Expect = 8.1e-16
Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           ++P VDFGLKLLGA AMSI  LYRFVQELIKDQVANMYLW KTLEVPIMDPAK ++
Sbjct: 201 EKPHVDFGLKLLGADAMSIPGLYRFVQELIKDQVANMYLWPKTLEVPIMDPAKAMK 256

[Close]

BLAST of PI0010851 vs. TAIR 10
Match: AT1G20080.1 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-17
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           D+P VDFGLKLLGA  M+I  LYRFVQE+IKDQVANMYLW KTL V IMDP+K ++
Sbjct: 201 DKPQVDFGLKLLGADVMAIPGLYRFVQEIIKDQVANMYLWPKTLNVQIMDPSKAMK 256

[Close]

BLAST of PI0010851 vs. TAIR 10
Match: AT2G20990.1 (synaptotagmin A )

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 42/56 (75.00%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           ++P VDFGLKL GA  MSI  LYRFVQE IKDQVANMYLW KTL VPI+DPAK  R
Sbjct: 201 EKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLWPKTLVVPILDPAKAFR 256

[Close]

BLAST of PI0010851 vs. TAIR 10
Match: AT2G20990.2 (synaptotagmin A )

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-16
Identity = 42/56 (75.00%), Postives = 45/56 (80.36%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMDPAKYVR 107
           ++P VDFGLKL GA  MSI  LYRFVQE IKDQVANMYLW KTL VPI+DPAK  R
Sbjct: 201 EKPHVDFGLKLGGADLMSIPGLYRFVQEQIKDQVANMYLWPKTLVVPILDPAKAFR 256

[Close]

BLAST of PI0010851 vs. TAIR 10
Match: AT5G04220.2 (Calcium-dependent lipid-binding (CaLB domain) family protein )

HSP 1 Score: 65.9 bits (159), Expect = 2.9e-11
Identity = 30/50 (60.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQELIKDQVANMYLWAKTLEVPIMD 101
           ++P VDFGLK+LG   MSI  LYR+VQE IK QV++MY W + LE+PI+D
Sbjct: 201 EKPHVDFGLKVLGGDLMSIPGLYRYVQETIKRQVSSMYHWPQVLEIPILD 250

[Close]

BLAST of PI0010851 vs. TAIR 10
Match: AT2G20990.3 (synaptotagmin A )

HSP 1 Score: 64.7 bits (156), Expect = 6.4e-11
Identity = 42/94 (44.68%), Postives = 45/94 (47.87%), Query Frame = 0


Query: 51  DQPDVDFGLKLLGAYAMSIARLYRFVQ--------------------------------- 107
           ++P VDFGLKL GA  MSI  LYRFVQ                                 
Sbjct: 201 EKPHVDFGLKLGGADLMSIPGLYRFVQVDIFLLHTSFKSLTCMSKNFFMRERADETVTFR 260

The following BLAST results are available for this feature:

BLAST of PI0010851 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6ETT4	2.2e-16	73.21	Synaptotagmin-2 OS=Arabidopsis thaliana OX=3702 GN=SYT2 PE=2 SV=1	[more]
Q9SKR2	1.9e-15	75.00	Synaptotagmin-1 OS=Arabidopsis thaliana OX=3702 GN=SYT1 PE=1 SV=2	[more]
Q7XA06	4.0e-10	60.00	Synaptotagmin-3 OS=Arabidopsis thaliana OX=3702 GN=SYT3 PE=2 SV=1	[more]

BLAST of PI0010851 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4S4EIS7	2.3e-16	85.45	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0236...	[more]
A0A5B6YHH5	3.9e-16	82.14	Putative synaptotagmin-2 OS=Davidia involucrata OX=16924 GN=Din_000569 PE=3 SV=1	[more]
A0A5B6YHQ5	3.9e-16	82.14	Putative synaptotagmin-2 OS=Davidia involucrata OX=16924 GN=Din_000566 PE=3 SV=1	[more]
A0A5J5ACN6	3.9e-16	82.14	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_036120 PE=3 SV=1	[more]
A0A7J7GUL2	3.9e-16	82.14	Uncharacterized protein OS=Camellia sinensis OX=4442 GN=HYC85_020776 PE=3 SV=1	[more]

BLAST of PI0010851 vs. NCBI nr


Match Name	E-value	Identity	Description
THG15796.1	4.7e-16	85.45	hypothetical protein TEA_023656 [Camellia sinensis var. sinensis]	[more]
KAF5943134.1	8.1e-16	82.14	hypothetical protein HYC85_020776 [Camellia sinensis]	[more]
KAA8528765.1	8.1e-16	82.14	hypothetical protein F0562_036120 [Nyssa sinensis]	[more]
XP_028072967.1	8.1e-16	82.14	synaptotagmin-2-like isoform X2 [Camellia sinensis]	[more]
XP_028072961.1	8.1e-16	82.14	synaptotagmin-2-like isoform X1 [Camellia sinensis]	[more]

BLAST of PI0010851 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20080.1	1.6e-17	73.21	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT2G20990.1	1.3e-16	75.00	synaptotagmin A	[more]
AT2G20990.2	1.3e-16	75.00	synaptotagmin A	[more]
AT5G04220.2	2.9e-11	60.00	Calcium-dependent lipid-binding (CaLB domain) family protein	[more]
AT2G20990.3	6.4e-11	44.68	synaptotagmin A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR045050	Synaptotagmin, plant	PANTHER	PTHR10774	EXTENDED SYNAPTOTAGMIN-RELATED	coord: 51..105
None	No IPR available	PANTHER	PTHR10774:SF197	CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN-RELATED	coord: 51..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010851.1	PI0010851.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0006869	lipid transport
biological_process	GO:0006979	response to oxidative stress
cellular_component	GO:0012505	endomembrane system
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005777	peroxisome
molecular_function	GO:0020037	heme binding
molecular_function	GO:0016688	L-ascorbate peroxidase activity
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0046872	metal ion binding