PI0010830 (gene) Melon (PI 482460) v1

Overview


Name	PI0010830
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	B3 domain-containing transcription factor VRN1-like
Location	chr03: 15787834 .. 15788139 (+)
RNA-Seq Expression	PI0010830
Synteny	PI0010830

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCAATATGCTGCTATTTGGACCAAGAACAAAAAGATTCAAAAGGAAAAGGAAAAACCGTGCAAGTTGTTGTGATGGGCAAGATGTGAAGGTTGACTTTGCCCTCTTTATCGAAATTGTGATGGTGATTTTGAATATGTTTACAAAAGACTATGGTAAGATCTTATCAACTTTCTTGATTCCGAAGCCTCTTCTAAATTCAGATGGAAGAGAATGGAAGGTGGGTTTGACAATGAAAGATAACAACGTTGTTTGGCTGCAAAAAGGATGGGGTCTTAGAACACCGGAACCCATTCTTCTGTAG

mRNA sequence

ATGTGCAATATGCTGCTATTTGGACCAAGAACAAAAAGATTCAAAAGGAAAAGGAAAAACCGTGCAAGTTGTTGTGATGGGCAAGATGTGAAGGTTGACTTTGCCCTCTTTATCGAAATTGTGATGGTGATTTTGAATATGTTTACAAAAGACTATGGTAAGATCTTATCAACTTTCTTGATTCCGAAGCCTCTTCTAAATTCAGATGGAAGAGAATGGAAGGTGGGTTTGACAATGAAAGATAACAACGTTGTTTGGCTGCAAAAAGGATGGGGTCTTAGAACACCGGAACCCATTCTTCTGTAG

Coding sequence (CDS)

ATGTGCAATATGCTGCTATTTGGACCAAGAACAAAAAGATTCAAAAGGAAAAGGAAAAACCGTGCAAGTTGTTGTGATGGGCAAGATGTGAAGGTTGACTTTGCCCTCTTTATCGAAATTGTGATGGTGATTTTGAATATGTTTACAAAAGACTATGGTAAGATCTTATCAACTTTCTTGATTCCGAAGCCTCTTCTAAATTCAGATGGAAGAGAATGGAAGGTGGGTTTGACAATGAAAGATAACAACGTTGTTTGGCTGCAAAAAGGATGGGGTCTTAGAACACCGGAACCCATTCTTCTGTAG

Protein sequence

MCNMLLFGPRTKRFKRKRKNRASCCDGQDVKVDFALFIEIVMVILNMFTKDYGKILSTFLIPKPLLNSDGREWKVGLTMKDNNVVWLQKGWGLRTPEPILL

Homology

[Close]

BLAST of PI0010830 vs. ExPASy TrEMBL
Match: A0A5D3C119 (B3 domain-containing transcription factor VRN1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001830 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.1e-08
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 30 VKVDFALFIEIVMVILNMFTKDYGKILSTFLIPKPLLNSDGREWKVGLTMKDNNVVWLQK 89
          VKV    FI+ VM+IL MF KD+GK+LS F+I   ++  +GREWK GLT  DN+ VWLQK
Sbjct: 21 VKVALTFFIKTVMMILKMFIKDHGKLLSCFMI---IVLLNGREWKAGLTKVDNDGVWLQK 77

[Close]

BLAST of PI0010830 vs. ExPASy TrEMBL
Match: A0A5D3CM75 (B3 domain-containing transcription factor VRN1-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005160 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.5e-07
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 42 MVILNMFTKDYGKILSTFLIPKPLLNSDGREWKVGLTMKDNNVVWLQKGW 92
          ++I  MF KDYGK LS F+I   L   DGREWKVGLT +DN  VWLQ+GW
Sbjct: 21 LMIPRMFIKDYGKFLSNFVI---LELPDGREWKVGLTWRDNGSVWLQEGW 67

[Close]

BLAST of PI0010830 vs. ExPASy TrEMBL
Match: A0A0A0KL64 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489970 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 42 MVILNMFTKDYGKILSTFLIPKPLLNSDGREWKVGLTMKDNNVVWLQKGW 92
          ++I  MF K YGK+LS+ +I   L   DGREWK+GLT  DN  VWL+KGW
Sbjct: 21 LMIPRMFIKSYGKLLSSSVI---LKLPDGREWKIGLTTSDNGAVWLEKGW 67

[Close]

BLAST of PI0010830 vs. ExPASy TrEMBL
Match: A0A6J1KQQ1 (B3 domain-containing transcription factor VRN1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111496775 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 42 MVILNMFTKDYGKILSTFLIPKPLLNSDGREWKVGLTMKDNNVVWLQKGW 92
          ++I   F KDYG++LST +    L   DG EWKVGLT   N VVWLQ GW
Sbjct: 22 LMIPKKFVKDYGELLSTSV---RLKLPDGMEWKVGLTTAPNGVVWLQNGW 68

[Close]

BLAST of PI0010830 vs. ExPASy TrEMBL
Match: A0A6J1KN14 (B3 domain-containing transcription factor VRN1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111496775 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 27/50 (54.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 42 MVILNMFTKDYGKILSTFLIPKPLLNSDGREWKVGLTMKDNNVVWLQKGW 92
          ++I   F KDYG++LST +    L   DG EWKVGLT   N VVWLQ GW
Sbjct: 22 LMIPKKFVKDYGELLSTSV---RLKLPDGMEWKVGLTTAPNGVVWLQNGW 68

[Close]

BLAST of PI0010830 vs. NCBI nr
Match: TYK04964.1 (B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 30 VKVDFALFIEIVMVILNMFTKDYGKILSTFLIPKPLLNSDGREWKVGLTMKDNNVVWLQK 89
          VKV    FI+ VM+IL MF KD+GK+LS F+I   ++  +GREWK GLT  DN+ VWLQK
Sbjct: 21 VKVALTFFIKTVMMILKMFIKDHGKLLSCFMI---IVLLNGREWKAGLTKVDNDGVWLQK 77

[Close]

BLAST of PI0010830 vs. NCBI nr
Match: TYK12921.1 (B3 domain-containing transcription factor VRN1-like isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 64.7 bits (156), Expect = 5.2e-07
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 42 MVILNMFTKDYGKILSTFLIPKPLLNSDGREWKVGLTMKDNNVVWLQKGW 92
          ++I  MF KDYGK LS F+I   L   DGREWKVGLT +DN  VWLQ+GW
Sbjct: 21 LMIPRMFIKDYGKFLSNFVI---LELPDGREWKVGLTWRDNGSVWLQEGW 67

[Close]

BLAST of PI0010830 vs. NCBI nr
Match: KAE8647490.1 (hypothetical protein Csa_003352 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 42 MVILNMFTKDYGKILSTFLIPKPLLNSDGREWKVGLTMKDNNVVWLQKGW 92
          ++I  MF K YGK+LS+ +I   L   DGREWK+GLT  DN  VWL+KGW
Sbjct: 21 LMIPRMFIKSYGKLLSSSVI---LKLPDGREWKIGLTTSDNGAVWLEKGW 67

[Close]

BLAST of PI0010830 vs. NCBI nr
Match: XP_031742404.1 (B3 domain-containing transcription factor VRN1 isoform X2 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 42 MVILNMFTKDYGKILSTFLIPKPLLNSDGREWKVGLTMKDNNVVWLQKGW 92
          ++I  MF K YGK+LS+ +I   L   DGREWK+GLT  DN  VWL+KGW
Sbjct: 21 LMIPRMFIKSYGKLLSSSVI---LKLPDGREWKIGLTTSDNGAVWLEKGW 67

[Close]

BLAST of PI0010830 vs. NCBI nr
Match: XP_031742405.1 (B3 domain-containing transcription factor VRN1 isoform X3 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 7.6e-06
Identity = 28/50 (56.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 42 MVILNMFTKDYGKILSTFLIPKPLLNSDGREWKVGLTMKDNNVVWLQKGW 92
          ++I  MF K YGK+LS+ +I   L   DGREWK+GLT  DN  VWL+KGW
Sbjct: 21 LMIPRMFIKSYGKLLSSSVI---LKLPDGREWKIGLTTSDNGAVWLEKGW 67

The following BLAST results are available for this feature:

BLAST of PI0010830 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010830 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C119	5.1e-08	56.67	B3 domain-containing transcription factor VRN1-like OS=Cucumis melo var. makuwa ...	[more]
A0A5D3CM75	2.5e-07	62.00	B3 domain-containing transcription factor VRN1-like isoform X2 OS=Cucumis melo v...	[more]
A0A0A0KL64	3.7e-06	56.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G489970 PE=4 SV=1	[more]
A0A6J1KQQ1	2.0e-04	54.00	B3 domain-containing transcription factor VRN1-like isoform X1 OS=Cucurbita maxi...	[more]
A0A6J1KN14	2.0e-04	54.00	B3 domain-containing transcription factor VRN1-like isoform X2 OS=Cucurbita maxi...	[more]

BLAST of PI0010830 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04964.1	1.1e-07	56.67	B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa]	[more]
TYK12921.1	5.2e-07	62.00	B3 domain-containing transcription factor VRN1-like isoform X2 [Cucumis melo var...	[more]
KAE8647490.1	7.6e-06	56.00	hypothetical protein Csa_003352 [Cucumis sativus]	[more]
XP_031742404.1	7.6e-06	56.00	B3 domain-containing transcription factor VRN1 isoform X2 [Cucumis sativus]	[more]
XP_031742405.1	7.6e-06	56.00	B3 domain-containing transcription factor VRN1 isoform X3 [Cucumis sativus]	[more]

BLAST of PI0010830 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010830.1	PI0010830.1	mRNA