PI0010783 (gene) Melon (PI 482460) v1

Overview
NamePI0010783
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description40S ribosomal protein S12
Locationchr01: 26876635 .. 26878872 (-)
RNA-Seq ExpressionPI0010783
SyntenyPI0010783
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCCCTCCTTCTCTCAGTCCTGCCGCCGCCGCCATCTCTCGATCTCTGGTAAGCTTCTCTCTCTCTCTCTCTAAATCTCCGGCCAAAATTTCTTATTCTCCTCAGCATGTCCATTGTTTATCCCCTTCTATTCGTCCAGAAATACTCAGATCGTCTCCCTTCATCCTCCTTCCTCAGATTTACATCTCGCAGCTGTTTATTGATCTCCTACTTGTTTGATTATCATATTCGAAAATCCAAACTGATTAGTGGTTTACTCTATATGTCTTTGTTCTTGATTCAAACTTGTTGTAATAGGTTTCATTATATTTCTTTTATCTAATTGTTTAGTTTTTTTTTTTTGTGTCGTACAGATTTTCTTGCAATAGCAAGGAGGTAGAACTTCTAAATCAAGAAGAAAAATGTCAGCGTGAGTGGATACTTGTTTATTATAATTGCTAGCTTCTACGTTAATTCCCATTTTTATGTTGCATCTGAGCGCGATTTTCCCCCAATATCTTATAAATAGACGATGACTTGTTTTGTTTAGAAGTAGAATCTGCTGCTTGCAATCAACTATTAGAGAGTGTTTGGTATTCTTCAGTATGAATAAGAATAGAGTTGGAAATTTGATTTCTGAAGGCGACGAAGCAATCTATCTTGATGCCTTGAGATGTAAATTATATGTTTTGGTAAATTATATGTTTTGGTCATTGGTCAAATAAAATGTAGAGTTTTGAAGTTCAGTATGTGGTTTATACGTCGATCTGTAATAGTTCTTTGTATGGGACTAAGGGTTGCTGGGGAGTCAAGATTGCTATATTACACGTTCAATAGCGAACTATTATTGAAGTTGAGGCATTTCTTTTTGGTAATGTCATGATATTGAGTCGATGAGTATGCAATTGTCTTACATTGTTGACAGAACCTTGCCTTAAAGGGGTATTCTATTTCTTTTTTAATTGGTTTCTTTTGCAGTGATGAAGTTGCTGTTGTGGCTGAGGCTCCAGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGCTTGTTCTTAGAAAATCATTGGCTCATGGTGGGCTTGTTCGAGGTCTTCACGAGAGTGCTAAAGCTATTGAGAAACATGCTGCTCAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGTGCAGAGCACAACGTTAACTTGATGACAGTCCCAAGTGCGAAAACTCTTGGCGAGTGGGCTGGTGTAAGTGTTCAATCTTATTTAGAGTCAGTTTTTAACATTCATTCTGCAGTGAAATGGTTTCCCCATTGCTCTCTTTTCATTGATATCTGGCACCACTATGCTATATTATAATCATTCTACCAAGATTTAACCTGTATCTTTCATTATTTAGCTACATGTAAAACATGTTCTGGATTATATAAGAATATAAACAAAATGTATATATGCAAATCCAGTGGATTTGTTTGATCCTCATATAAAGTGACCTGCTAACACTACCATGACTTTTTAGCATCTGCATTCTACACCATCAGCATCTACCTATTTTACTAGCAAAGGGTTCAGGAGAATTCATTTTTTTCCATATTTGGTTTAATGCAGCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGTTGCTCTTGTGTCGTAGTTAAGGTACATATATATGTCCATTCACTTCCGTAGCAAATATTCTGTTCCTTCTCTTTTCATACAATCTGTTTACTTGAGTTTTGAATGTGTTTATCCACAGGATTTTGGGGAAGACCACGAGGCGCTTCACATTGTCCAGAAGCATGTGAGTTCAAATTGATTACCGAAATGGTGTCTGTTGAGATTACAGTTGTTGGTCTCATTTAGAAAGTTTTTGATCCTTAGTTATGTTTAGATTTGGTGCACTGTTGTTGCTTTAACACCTACCTTCACCCTATAATGTGTTTTTTCTTTGTCGATTGATTGGAAAGACTAGTTTTTATCATCATCTGAGTCCATTGATGTGGAGCTCATTATCATTCCGGCCAACAGAACAATTTATTCACAAGAGTCTTCTTGCCCATGGGAAAAGTGGAATTGATATTTATCATCTTTTTTTCCTGATTTCATCTCTAGATTTTATTCACTCCCGTTTTATATCTAATTTGGTTCAAAATGACAATTATACCCTCATTAGGAAATTGAAAGGATGAATTATTATCTGCTGTTGACAAGGCAATTTTTGAAAA

mRNA sequence

CTCCCCTCCTTCTCTCAGTCCTGCCGCCGCCGCCATCTCTCGATCTCTGATTTTCTTGCAATAGCAAGGAGGTAGAACTTCTAAATCAAGAAGAAAAATGTCAGCTGATGAAGTTGCTGTTGTGGCTGAGGCTCCAGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGCTTGTTCTTAGAAAATCATTGGCTCATGGTGGGCTTGTTCGAGGTCTTCACGAGAGTGCTAAAGCTATTGAGAAACATGCTGCTCAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGTGCAGAGCACAACGTTAACTTGATGACAGTCCCAAGTGCGAAAACTCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGTTGCTCTTGTGTCGTAGTTAAGGATTTTGGGGAAGACCACGAGGCGCTTCACATTGTCCAGAAGCATGTGAGTTCAAATTGATTACCGAAATGGTGTCTGTTGAGATTACAGTTGTTGGTCTCATTTAGAAAGTTTTTGATCCTTAGTTATGTTTAGATTTGGTGCACTGTTGTTGCTTTAACACCTACCTTCACCCTATAATGTGTTTTTTCTTTGTCGATTGATTGGAAAGACTAGTTTTTATCATCATCTGAGTCCATTGATGTGGAGCTCATTATCATTCCGGCCAACAGAACAATTTATTCACAAGAGTCTTCTTGCCCATGGGAAAAGTGGAATTGATATTTATCATCTTTTTTTCCTGATTTCATCTCTAGATTTTATTCACTCCCGTTTTATATCTAATTTGGTTCAAAATGACAATTATACCCTCATTAGGAAATTGAAAGGATGAATTATTATCTGCTGTTGACAAGGCAATTTTTGAAAA

Coding sequence (CDS)

ATGTCAGCTGATGAAGTTGCTGTTGTGGCTGAGGCTCCAGCCCCAGCTCTAGGTGAGCCGATGGACATTGAGACTGCTCTGCAGCTTGTTCTTAGAAAATCATTGGCTCATGGTGGGCTTGTTCGAGGTCTTCACGAGAGTGCTAAAGCTATTGAGAAACATGCTGCTCAGCTCTGTGTCTTGGGAGAAGACTGCAACCAGCCAGATTATGTTAAACTTGTCAAAGCTCTCTGTGCAGAGCACAACGTTAACTTGATGACAGTCCCAAGTGCGAAAACTCTTGGCGAGTGGGCTGGTCTATGCAAGATTGATTCCGAAGGAAAGGCAAGGAAAGTTGTTGTTGCTCTTGTGTCGTAG

Protein sequence

MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVVVALVS
Homology
[Close]
BLAST of PI0010783 vs. ExPASy Swiss-Prot
Match: Q9XHS0 (40S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.7e-44
Identity = 87/108 (80.56%), Postives = 97/108 (89.81%), Query Frame = 0 

Query: 6   VAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDC 65
           V    EAP P LGEPMD+ TALQLV++KS AH GLV+GL E+AK+IEKHAAQLCVL EDC
Sbjct: 9   VVAPVEAPTPILGEPMDLMTALQLVMKKSSAHDGLVKGLREAAKSIEKHAAQLCVLAEDC 68

Query: 66  NQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           +QPDYVKLVKALCAEHNV+L+TVPSAKTLGEWAGLCKID+EGKARKVV
Sbjct: 69  DQPDYVKLVKALCAEHNVHLVTVPSAKTLGEWAGLCKIDTEGKARKVV 116

[Close]
BLAST of PI0010783 vs. ExPASy Swiss-Prot
Match: Q9SKZ3 (40S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.7e-39
Identity = 82/117 (70.09%), Postives = 92/117 (78.63%), Query Frame = 0 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVV
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVV 117

[Close]
BLAST of PI0010783 vs. ExPASy Swiss-Prot
Match: Q9S9P1 (40S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.1e-38
Identity = 83/117 (70.94%), Postives = 91/117 (77.78%), Query Frame = 0 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVV
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVV 117

[Close]
BLAST of PI0010783 vs. ExPASy Swiss-Prot
Match: Q76I81 (40S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-28
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 0 

Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVV
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVV 104

[Close]
BLAST of PI0010783 vs. ExPASy Swiss-Prot
Match: P25398 (40S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3)

HSP 1 Score: 125.9 bits (315), Expect = 2.9e-28
Identity = 60/98 (61.22%), Postives = 73/98 (74.49%), Query Frame = 0 

Query: 16  ALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCVLGEDCNQPDYVKLVK 75
           A G  MD+ TALQ VL+ +L H GL RG+ E+AKA++K  A LCVL  +C++P YVKLV+
Sbjct: 7   AAGGVMDVNTALQEVLKTALIHDGLARGIREAAKALDKRQAHLCVLASNCDEPMYVKLVE 66

Query: 76  ALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           ALCAEH +NL+ V   K LGEW GLCKID EGK RKVV
Sbjct: 67  ALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKVV 104

[Close]
BLAST of PI0010783 vs. ExPASy TrEMBL
Match: A0A6J1GQC3 (40S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 113

[Close]
BLAST of PI0010783 vs. ExPASy TrEMBL
Match: A0A6J1JWC7 (40S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.0e-55
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 113

[Close]
BLAST of PI0010783 vs. ExPASy TrEMBL
Match: A0A5D3BJY5 (40S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001870 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 113

[Close]
BLAST of PI0010783 vs. ExPASy TrEMBL
Match: A0A0A0LM61 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 113

[Close]
BLAST of PI0010783 vs. ExPASy TrEMBL
Match: A0A0A0KA08 (40S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQ+VLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQIVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           LGEDCNQPDYVKLVKALCAEHN NLMTVPSAKTLGEWAGLCKIDSEGKARKVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNCNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 113

[Close]
BLAST of PI0010783 vs. NCBI nr
Match: XP_022954225.1 (40S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosomal protein S12-like [Cucurbita moschata] >KAG6575626.1 40S ribosomal protein S12, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014180.1 40S ribosomal protein S12 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 224.9 bits (572), Expect = 3.5e-55
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 113

[Close]
BLAST of PI0010783 vs. NCBI nr
Match: XP_038896811.1 (40S ribosomal protein S12-like [Benincasa hispida])

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAEAP PALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAEAPVPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 113

[Close]
BLAST of PI0010783 vs. NCBI nr
Match: XP_022991483.1 (40S ribosomal protein S12-like [Cucurbita maxima])

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEV VVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVTVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 113

[Close]
BLAST of PI0010783 vs. NCBI nr
Match: XP_023548009.1 (40S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548011.1 40S ribosomal protein S12-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023548012.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo] >XP_023548013.1 40S ribosomal protein S12-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADEVAVVAE PAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEVAVVAETPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 113

[Close]
BLAST of PI0010783 vs. NCBI nr
Match: XP_004147008.1 (40S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribosomal protein S12-like [Cucumis melo] >XP_031736838.1 40S ribosomal protein S12 [Cucumis sativus] >KAA0045670.1 40S ribosomal protein S12 [Cucumis melo var. makuwa] >KGN61872.1 hypothetical protein Csa_006022 [Cucumis sativus] >TYJ99613.1 40S ribosomal protein S12 [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.3e-54
Identity = 112/113 (99.12%), Postives = 112/113 (99.12%), Query Frame = 0 

Query: 1   MSADEVAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60
           MSADE AVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV
Sbjct: 1   MSADEGAVVAEAPAPALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAAQLCV 60

Query: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV
Sbjct: 61  LGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 113

[Close]
BLAST of PI0010783 vs. TAIR 10
Match: AT2G32060.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-40
Identity = 82/117 (70.09%), Postives = 92/117 (78.63%), Query Frame = 0 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVV
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVV 117

[Close]
BLAST of PI0010783 vs. TAIR 10
Match: AT2G32060.3 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-40
Identity = 82/117 (70.09%), Postives = 92/117 (78.63%), Query Frame = 0 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVV
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVV 117

[Close]
BLAST of PI0010783 vs. TAIR 10
Match: AT2G32060.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-40
Identity = 82/117 (70.09%), Postives = 92/117 (78.63%), Query Frame = 0 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE       P    A  + E MD+ TAL+L +RKS A+GG+VRGLHESAK IEK  A
Sbjct: 1   MSGDEAVAAPVVPPVAEAAVIPEDMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           QLCVL EDCNQPDYVKLVKALCA+H++ L+TVPSAKTLGEWAGLCKIDSEG ARKVV
Sbjct: 61  QLCVLAEDCNQPDYVKLVKALCADHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVV 117

[Close]
BLAST of PI0010783 vs. TAIR 10
Match: AT1G15930.2 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-39
Identity = 83/117 (70.94%), Postives = 91/117 (77.78%), Query Frame = 0 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVV
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVV 117

[Close]
BLAST of PI0010783 vs. TAIR 10
Match: AT1G15930.1 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein )

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-39
Identity = 83/117 (70.94%), Postives = 91/117 (77.78%), Query Frame = 0 

Query: 1   MSADEVAVVAEAP----APALGEPMDIETALQLVLRKSLAHGGLVRGLHESAKAIEKHAA 60
           MS DE A V   P      A+ E MD+ TAL+L LRK+ A+GG+VRGLHE AK IEK  A
Sbjct: 1   MSGDEAAPVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVA 60

Query: 61  QLCVLGEDCNQPDYVKLVKALCAEHNVNLMTVPSAKTLGEWAGLCKIDSEGKARKVV 114
           QL VL EDCNQPDYVKLVKALCA+H V L+TVPSAKTLGEWAGLCKIDSEG ARKVV
Sbjct: 61  QLVVLAEDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVV 117

The following BLAST results are available for this feature:
BLAST of PI0010783 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9XHS01.7e-4480.5640S ribosomal protein S12 OS=Hordeum vulgare OX=4513 GN=RPS12 PE=2 SV=1[more]
Q9SKZ31.7e-3970.0940S ribosomal protein S12-2 OS=Arabidopsis thaliana OX=3702 GN=RPS12C PE=1 SV=1[more]
Q9S9P13.1e-3870.9440S ribosomal protein S12-1 OS=Arabidopsis thaliana OX=3702 GN=RPS12A PE=2 SV=1[more]
Q76I812.9e-2861.2240S ribosomal protein S12 OS=Bos taurus OX=9913 GN=RPS12 PE=2 SV=1[more]
P253982.9e-2861.2240S ribosomal protein S12 OS=Homo sapiens OX=9606 GN=RPS12 PE=1 SV=3[more]
BLAST of PI0010783 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GQC31.7e-55100.0040S ribosomal protein S12 OS=Cucurbita moschata OX=3662 GN=LOC111456544 PE=3 SV=... [more]
A0A6J1JWC75.0e-5599.1240S ribosomal protein S12 OS=Cucurbita maxima OX=3661 GN=LOC111488083 PE=3 SV=1[more]
A0A5D3BJY51.1e-5499.1240S ribosomal protein S12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A0A0LM611.1e-5499.1240S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_2G258680 PE=3 SV=1[more]
A0A0A0KA081.1e-5498.2340S ribosomal protein S12 OS=Cucumis sativus OX=3659 GN=Csa_7G432030 PE=3 SV=1[more]
BLAST of PI0010783 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022954225.13.5e-55100.0040S ribosomal protein S12-like [Cucurbita moschata] >XP_022954226.1 40S ribosoma... [more]
XP_038896811.11.0e-5499.1240S ribosomal protein S12-like [Benincasa hispida][more]
XP_022991483.11.0e-5499.1240S ribosomal protein S12-like [Cucurbita maxima][more]
XP_023548009.11.0e-5499.1240S ribosomal protein S12-like [Cucurbita pepo subsp. pepo] >XP_023548010.1 40S ... [more]
XP_004147008.12.3e-5499.1240S ribosomal protein S12 [Cucumis sativus] >XP_008457630.1 PREDICTED: 40S ribos... [more]
BLAST of PI0010783 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G32060.11.2e-4070.09Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT2G32060.31.2e-4070.09Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT2G32060.21.2e-4070.09Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G15930.22.2e-3970.94Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
AT1G15930.12.2e-3970.94Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000530Ribosomal protein S12ePRINTSPR00972RIBSOMALS12Ecoord: 85..106
score: 57.85
coord: 30..43
score: 54.55
coord: 44..60
score: 48.13
IPR000530Ribosomal protein S12ePANTHERPTHR1184340S RIBOSOMAL PROTEIN S12coord: 1..114
IPR000530Ribosomal protein S12ePROSITEPS01189RIBOSOMAL_S12Ecoord: 26..44
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 26..112
e-value: 1.3E-25
score: 88.9
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 4..118
e-value: 6.3E-44
score: 150.5
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 19..102
NoneNo IPR availablePANTHERPTHR11843:SF2340S RIBOSOMAL PROTEIN S12coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0010783.1PI0010783.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome