PI0010621 (gene) Melon (PI 482460) v1

Overview


Name	PI0010621
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr05: 16669735 .. 16671636 (-)
RNA-Seq Expression	PI0010621
Synteny	PI0010621

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATTCAAAGGCAACACTTCCAAAGCTCTAAGCAACATCGGAAAGAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGACATGCCACCCTTTGAGGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGAGGAGCACGGTTCGTCTTCTGAACGCTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTGATGTCGATACGAGTGAAGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAAGCGGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAGAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTTGCAGGAAAGTCAACCACAAAATTCGACCTCAATTGCATCGTTGTCTGTTCAACAGTTGCAGGATATGATAGCCAACTCCATCCGAACTCAATATGGTGGAACTGCTCAAACTTTCTCTTCATATTCCAAGCCATATACGAAGAGGATCGACAATCTGAAAATGCCGATTGGTTACCAGCCACCTAAGTTCCAGCAATTTGATGGAAAAGGCAATCCAAAGCAACACTCGCCCACTTTATCGAAACATGTGAAACTGCTGGTGCGCGAGGAGATTTGTTGGTTAGACAGTTCGTCCGAACTCTCAAGGGAAATGCCTTCGACTGGTACACCGATCTTGAGCCTGAAACCATTGATAGTTGGGAGCAGCTTGAGAGGGAATTTCTCAACCGCTTCTACAGCACTCGACGTATTGTTAGCATGATAGAGCTAACGGCCACCAAGCAGCGAAAGGGCGAGCCGGTCATTGACTACATTAATCGCTGGAGAGCGTTAAGCCTTGACTGCAAAGACAGATTAACTGAACTGTCAGCAGTGGAAATGTGCACCCAAGGAATGCATTGGGGGCTTCTGTACATCTTGCAGGGAATAAACCTCGCACCTTTGAAGAGTTAGCAACTAGAGCTCATGATATGGAGTTAAGTATTGCTAATAGGGGAAACAATGACCTGCTGATCCCAGAAGTGAGAAAGGAAAAGAAGGAAATGAAGAGCACCCTGAAGGTATCAAAGGGTGCTACCAAAAAAGCTATGGTCGTTACTACGACCCCTTTAAAGTTCGTTCCTAAAGAGAAGAAGATGGATAAACGCCAAGATGAAGGCGAAAAAAGACGCCCAACATTGAAAGAGAGGCAAGAAAAAGTTTACCCTTTTCCAGACTCTGACTTACCTGATATGTTAGAGCAATTACTGGAAAAACAACTCATTCAACTTCCTGAATGTAAACGACCAGCAGAAATTGGAAGGTAAATGATCCAAATTACTGCAAATATCATCGAGTTATCAGCCACCCTGTAGAGAAATGCTTCGTGTTAAAAGAGTTAATTTTGAAATTAGCTCTAGACAAAAAAATTGAACTTGATCTCGATGATGTGGCACAAACGAATCATATTGCAGTAATGAGTCATGCAGAGGGTCAATCACTTACTACAGGTAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTCACCGGAGGTCTTACAGAAAAATGACATCCGAGCTGTTCACCCAAAAGAAGAAGGAAAGCACGTGGAGAATGCTGACAAGGGATGGACGCTAGTCACGCGTCGAAAAAAACAAAAACAAAATTACTCTAAAAAAGAGTCTCGCTTGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAAACAAGGAGGGATGCAAGGAAGTTTCAACCAATCACTAAAGAAGTGAGGAGCTTCCTCGACCACGACAACCAATAA

mRNA sequence

ATGACATTCAAAGGCAACACTTCCAAAGCTCTAAGCAACATCGGAAAGAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGACATGCCACCCTTTGAGGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGAGGAGCACGGTTCGTCTTCTGAACGCTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTGATGTCGATACGAGTGAAGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAAGCGGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAGAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTTGCAGGAAAGTAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTCACCGGAGGTCTTACAGAAAAATGACATCCGAGCTGTTCACCCAAAAGAAGAAGGAAAGCACGTGGAGAATGCTGACAAGGGATGGACGCTAGTCACGCGTCGAAAAAAACAAAAACAAAATTACTCTAAAAAAGAGTCTCGCTTGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAAACAAGGAGGGATGCAAGGAAGTTTCAACCAATCACTAAAGAAGTGAGGAGCTTCCTCGACCACGACAACCAATAA

Coding sequence (CDS)

ATGACATTCAAAGGCAACACTTCCAAAGCTCTAAGCAACATCGGAAAGAGGCCAAATACTCGCAGCCGCTCAAGGGAGGCCCAATCGTCTGAGGACATGCCACCCTTTGAGGTCGCAAAGAGTATCTGGGAAGAGTTGTCAAAACCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGAGGAGCACGGTTCGTCTTCTGAACGCTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCGGTTATGGTGACTGATGTCGATACGAGTGAAGATAGAATGGCGGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAAGCGGTTGAAGAAAGGGATTATGAGATTGCATCCCTGAGAAATCACATTGAAAGTCGTGACGCTGCTGAATCAAGTCACACATATACCACCAAGAATAAGGACAAAGGGAAGGCAATTTTGCAGGAAAGTAGTCTAATCCAATTTGGATCTTTGGAGCCTGTTGTTATATATTCTTCACCGGAGGTCTTACAGAAAAATGACATCCGAGCTGTTCACCCAAAAGAAGAAGGAAAGCACGTGGAGAATGCTGACAAGGGATGGACGCTAGTCACGCGTCGAAAAAAACAAAAACAAAATTACTCTAAAAAAGAGTCTCGCTTGTACCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAAACAAGGAGGGATGCAAGGAAGTTTCAACCAATCACTAAAGAAGTGAGGAGCTTCCTCGACCACGACAACCAATAA

Protein sequence

MTFKGNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENPVIEEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAVEERDYEIASLRNHIESRDAAESSHTYTTKNKDKGKAILQESSLIQFGSLEPVVIYSSPEVLQKNDIRAVHPKEEGKHVENADKGWTLVTRRKKQKQNYSKKESRLYREYKRKGKSQRRKTRRDARKFQPITKEVRSFLDHDNQ

Homology

[Close]

BLAST of PI0010621 vs. ExPASy TrEMBL
Match: A0A5A7UJR2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001080 PE=4 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 8.2e-63
Identity = 185/488 (37.91%), Postives = 213/488 (43.65%), Query Frame = 0


Query: 1   MTFKGNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIEEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAVEERDYEIASL 120
            I+EH S SER +EE+P PNIMSVMVTDVDTSEDRMA+LEKKVNM +K VEERD+EIA L
Sbjct: 61  AIDEHNSLSERLNEEVPQPNIMSVMVTDVDTSEDRMADLEKKVNMFMKGVEERDFEIALL 120

Query: 121 RNHIESRDAAESSHTYTTKNKDKGKAILQES----------------------------- 180
           +NHIESRDAAESSHT+T KN +KGKAI+QES                             
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQKLQEMIANSIKTQYG 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 RPAQTLMERAIQNNMLLISSKLMKLLGIKPRTFEELATRAQDMELSIANRGNNDLLVPEV 240

Query: 241 ------------------------------------------------------------ 244
                                                                       
Sbjct: 241 RKEKKEVKSTQKVLKGATKEAMVVSTTPLKLVSKEKKMEKRQDEGKKRRPTLKERQEKIY 300

[Close]

BLAST of PI0010621 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 3.4e-61
Identity = 125/151 (82.78%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 1   MTFKGNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIEEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAVEERDYEIASL 120
            ++EH S SERS+EE+P PNIMSVMVTDVDTSEDRMAELEKKVNML+KAVEERD+EIA L
Sbjct: 61  AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120

Query: 121 RNHIESRDAAESSHTYTTKNKDKGKAILQES 152
           +NHIESRDAAESSHT+T KN +KGKAI+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQES 151

[Close]

BLAST of PI0010621 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.5e-24
Identity = 70/120 (58.33%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 124 IESRDAAESSHTYTTKNKDKGKAILQESSLIQFGSLEPVVIYSSPEVLQKNDIRAVHPKE 183
           +E  D A+++H       D   + +   SLIQFGSLEPVVIYSSPE LQ ND RA  PKE
Sbjct: 507 LELDDVAQTNHAAVIIQSDSRLSAI--GSLIQFGSLEPVVIYSSPEDLQNNDFRADGPKE 566

Query: 184 EGKHVENADKGWTLVTRRKKQKQNYSKKESRLYREYKRKGKSQRRKTRRDARKFQPITKE 243
           E K V+N ++GWTLVTRRKK+KQ++S+KES  YR Y+ KGKSQRR TR++ RKF PI +E
Sbjct: 567 EEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPIIEE 624

HSP 2 Score: 244.6 bits (623), Expect = 4.5e-61
Identity = 125/151 (82.78%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MTFKGNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMPPFEV K+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVVKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIEEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAVEERDYEIASL 120
            I+EH S SERS+EE+P PNIMSVMVTDVDTSEDRMAELEKKVNML+KAVEE+D+EIA L
Sbjct: 61  AIDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALL 120

Query: 121 RNHIESRDAAESSHTYTTKNKDKGKAILQES 152
           +NHIESRDAAESSHT+T KN +KGKAI+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQES 151

[Close]

BLAST of PI0010621 vs. ExPASy TrEMBL
Match: A0A5A7SKR0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00170 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 5.9e-61
Identity = 124/151 (82.12%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MTFKGNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIEEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAVEERDYEIASL 120
            I+EH S SERS+EE+P PNIMS+MVTDVDTSEDRMAELEKKVNML+K VEERD+EIA L
Sbjct: 61  AIDEHNSLSERSNEEVPQPNIMSIMVTDVDTSEDRMAELEKKVNMLMKVVEERDFEIALL 120

Query: 121 RNHIESRDAAESSHTYTTKNKDKGKAILQES 152
           +NHIESRDAAESSHT+T KN +KGKAI+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQES 151

[Close]

BLAST of PI0010621 vs. ExPASy TrEMBL
Match: A0A5A7SKR0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold506G00170 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 6.3e-15
Identity = 51/93 (54.84%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 124 IESRDAAESSHTYTTKNKDKGKAILQESSLIQFGSLEPVVIYSSPEVLQKNDIRAVHPKE 183
           +E  D A+++H       D   + +   SLIQFGSLEPVVIYSSPE LQ ND R   PKE
Sbjct: 430 LELDDVAQTNHAAVIIQSDSRLSAI--GSLIQFGSLEPVVIYSSPEDLQNNDFRTDSPKE 489

Query: 184 EGKHVENADKGWTLVTRRKKQKQNYSKKESRLY 217
           E K V+N ++GWTLVT RKK+KQ++S+KES  Y
Sbjct: 490 EEKQVDNVEEGWTLVTHRKKRKQSFSQKESGAY 520

HSP 2 Score: 242.7 bits (618), Expect = 1.7e-60
Identity = 127/171 (74.27%), Postives = 147/171 (85.96%), Query Frame = 0


Query: 1   MTFKGNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIEEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAVEERDYEIASL 120
            I+EH SSS+ SSEEMPHPNIMSVMVT+VDTSE+RMAELEKKVNML+K VEERDYEIA L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAESSHTYTTKNKDKGKAILQESSLIQFGSLEPVVIYSSPEVL 172
           +NHIESRDAAESSH +T KN DKGKA++QES      S+  + +    E++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNLTSIASLSVQQLQEMI 171

[Close]

BLAST of PI0010621 vs. NCBI nr
Match: KAA0053731.1 (uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa])

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-62
Identity = 185/488 (37.91%), Postives = 213/488 (43.65%), Query Frame = 0


Query: 1   MTFKGNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIEEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAVEERDYEIASL 120
            I+EH S SER +EE+P PNIMSVMVTDVDTSEDRMA+LEKKVNM +K VEERD+EIA L
Sbjct: 61  AIDEHNSLSERLNEEVPQPNIMSVMVTDVDTSEDRMADLEKKVNMFMKGVEERDFEIALL 120

Query: 121 RNHIESRDAAESSHTYTTKNKDKGKAILQES----------------------------- 180
           +NHIESRDAAESSHT+T KN +KGKAI+QES                             
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASLSVQKLQEMIANSIKTQYG 180

Query: 181 ------------------------------------------------------------ 240
                                                                       
Sbjct: 181 RPAQTLMERAIQNNMLLISSKLMKLLGIKPRTFEELATRAQDMELSIANRGNNDLLVPEV 240

Query: 241 ------------------------------------------------------------ 244
                                                                       
Sbjct: 241 RKEKKEVKSTQKVLKGATKEAMVVSTTPLKLVSKEKKMEKRQDEGKKRRPTLKERQEKIY 300

[Close]

BLAST of PI0010621 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 7.1e-61
Identity = 125/151 (82.78%), Postives = 142/151 (94.04%), Query Frame = 0


Query: 1   MTFKGNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIEEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAVEERDYEIASL 120
            ++EH S SERS+EE+P PNIMSVMVTDVDTSEDRMAELEKKVNML+KAVEERD+EIA L
Sbjct: 61  AMDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALL 120

Query: 121 RNHIESRDAAESSHTYTTKNKDKGKAILQES 152
           +NHIESRDAAESSHT+T KN +KGKAI+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQES 151

[Close]

BLAST of PI0010621 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 120.9 bits (302), Expect = 1.5e-23
Identity = 70/120 (58.33%), Postives = 87/120 (72.50%), Query Frame = 0


Query: 124 IESRDAAESSHTYTTKNKDKGKAILQESSLIQFGSLEPVVIYSSPEVLQKNDIRAVHPKE 183
           +E  D A+++H       D   + +   SLIQFGSLEPVVIYSSPE LQ ND RA  PKE
Sbjct: 507 LELDDVAQTNHAAVIIQSDSRLSAI--GSLIQFGSLEPVVIYSSPEDLQNNDFRADGPKE 566

Query: 184 EGKHVENADKGWTLVTRRKKQKQNYSKKESRLYREYKRKGKSQRRKTRRDARKFQPITKE 243
           E K V+N ++GWTLVTRRKK+KQ++S+KES  YR Y+ KGKSQRR TR++ RKF PI +E
Sbjct: 567 EEKQVDNVEEGWTLVTRRKKRKQSFSQKESGAYRTYRSKGKSQRRNTRKNPRKFLPIIEE 624

HSP 2 Score: 244.6 bits (623), Expect = 9.3e-61
Identity = 125/151 (82.78%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MTFKGNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMPPFEV K+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVVKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIEEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAVEERDYEIASL 120
            I+EH S SERS+EE+P PNIMSVMVTDVDTSEDRMAELEKKVNML+KAVEE+D+EIA L
Sbjct: 61  AIDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALL 120

Query: 121 RNHIESRDAAESSHTYTTKNKDKGKAILQES 152
           +NHIESRDAAESSHT+T KN +KGKAI+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQES 151

[Close]

BLAST of PI0010621 vs. NCBI nr
Match: KAA0031754.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.2 bits (622), Expect = 1.2e-60
Identity = 124/151 (82.12%), Postives = 141/151 (93.38%), Query Frame = 0


Query: 1   MTFKGNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMPPF+VAK+IWE++SKPPKGGI+IKENP
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFDVAKNIWEQISKPPKGGIVIKENP 60

Query: 61  VIEEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAVEERDYEIASL 120
            I+EH S SERS+EE+P PNIMS+MVTDVDTSEDRMAELEKKVNML+K VEERD+EIA L
Sbjct: 61  AIDEHNSLSERSNEEVPQPNIMSIMVTDVDTSEDRMAELEKKVNMLMKVVEERDFEIALL 120

Query: 121 RNHIESRDAAESSHTYTTKNKDKGKAILQES 152
           +NHIESRDAAESSHT+T KN +KGKAI+QES
Sbjct: 121 KNHIESRDAAESSHTHTIKNANKGKAIMQES 151

[Close]

BLAST of PI0010621 vs. NCBI nr
Match: KAA0031754.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.3 bits (225), Expect = 1.3e-14
Identity = 51/93 (54.84%), Postives = 64/93 (68.82%), Query Frame = 0


Query: 124 IESRDAAESSHTYTTKNKDKGKAILQESSLIQFGSLEPVVIYSSPEVLQKNDIRAVHPKE 183
           +E  D A+++H       D   + +   SLIQFGSLEPVVIYSSPE LQ ND R   PKE
Sbjct: 430 LELDDVAQTNHAAVIIQSDSRLSAI--GSLIQFGSLEPVVIYSSPEDLQNNDFRTDSPKE 489

Query: 184 EGKHVENADKGWTLVTRRKKQKQNYSKKESRLY 217
           E K V+N ++GWTLVT RKK+KQ++S+KES  Y
Sbjct: 490 EEKQVDNVEEGWTLVTHRKKRKQSFSQKESGAY 520

HSP 2 Score: 242.7 bits (618), Expect = 3.5e-60
Identity = 127/171 (74.27%), Postives = 147/171 (85.96%), Query Frame = 0


Query: 1   MTFKGNTSKALSNIGKRPNTRSRSREAQSSEDMPPFEVAKSIWEELSKPPKGGIIIKENP 60
           MT +GNTSKALS+IGKRPNTRSRSRE QSSEDMPPFEVAK+IWE++SKPPKGGI+IKEN 
Sbjct: 1   MTSQGNTSKALSDIGKRPNTRSRSREIQSSEDMPPFEVAKNIWEQISKPPKGGIVIKENH 60

Query: 61  VIEEHGSSSERSSEEMPHPNIMSVMVTDVDTSEDRMAELEKKVNMLLKAVEERDYEIASL 120
            I+EH SSS+ SSEEMPHPNIMSVMVT+VDTSE+RMAELEKKVNML+K VEERDYEIA L
Sbjct: 61  AIDEHYSSSKPSSEEMPHPNIMSVMVTNVDTSENRMAELEKKVNMLMKVVEERDYEIAFL 120

Query: 121 RNHIESRDAAESSHTYTTKNKDKGKAILQESSLIQFGSLEPVVIYSSPEVL 172
           +NHIESRDAAESSH +T KN DKGKA++QES      S+  + +    E++
Sbjct: 121 KNHIESRDAAESSHKHTVKNTDKGKAVMQESQPQNLTSIASLSVQQLQEMI 171

The following BLAST results are available for this feature:

BLAST of PI0010621 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010621 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJR2	8.2e-63	37.91	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7TZU9	3.4e-61	82.78	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7TZU9	7.5e-24	58.33	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7SKR0	5.9e-61	82.12	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SKR0	6.3e-15	54.84	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of PI0010621 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0053731.1	1.7e-62	37.91	uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]	[more]
KAA0047477.1	7.1e-61	82.78	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0047477.1	1.5e-23	58.33	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0031754.1	1.2e-60	82.12	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0031754.1	1.3e-14	54.84	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0010621 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010621.1	PI0010621.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity