PI0010529 (gene) Melon (PI 482460) v1

Overview


Name	PI0010529
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	C3H1-type domain-containing protein
Location	chr02: 276426 .. 278174 (+)
RNA-Seq Expression	PI0010529
Synteny	PI0010529

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTATAAGTAAATTTTCAAAAAAAAAAAAAGATATAAAAACTAGGAATCGTGGGGAAAAAAACTAAAGGCAGATTGGAGTGGAAATTGATCAGAAACAGAAAAGCTTTAAGGAAAGCTTTAGAACGACGACGAAGAAGAAGAAGACTGAAGGAATCGAAGAAGAAGATGCCATTGGGAAAATATTACTGCGACTACTGCGATAAGCAATTTCAAGATACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAAAGGTTCTAAACTCCATCTCCTCTCTTCTTTCTCCCTTTTCCCCTCGTTTTTTCCCCCCTCAATTCTTCCCTTTTCCCTTGCAGATTCAAATCAATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGTAATTCTTAATTCTTCTTCTTCCCTTCGCATCTTCATCCATCCATTTTCTTTTAACCTAATTTTTGCTTCTTCTTCGTCTTCATTTCAAAGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATGACAATACGCACAACTCCAGTTCCCACCCCATTGCAGGTACCCGAAATTTATTTTTGTTTTCCATCCATTTCCTGTCTGATTTTGAATCTAATTCACAGGTTTCCCGGAAAATAATCAACCACCAAATATTTCGGTTAATCGGTTTGTAGACGGCAGCTCTTCTTCCGCAGGTACCTTTTAAAGTGAACTTGTTGCCGGTTATTTTGACAGCTTTATGTGTTCCACACTTTGTTTATTGTTGCCAACAGAAACAGCAGTGTATTTGCTCATTCATAGCAACAATTCATCTTTCATTGATCGATTTTGAACAGCTCTACATATTGTTTGGTAACCAGGTTTTTATTTTTAGTTTTTGAAAATTAACCATCTAAAACACTAATCCACCTCTAAGTTCCTTGCTTTTATTGTCTACTTCCTACCAATTTTAAAAAAATCAGGCCAGGTTTTGAAACTTAAAAAAACTTTTATTTTTAGAATTTAGCTGAAAGTTCTAACTCTTTTACCCAATAAAGATGAAAAGAGTATTGTAAGTAATTGAGAGATGATGGACTTAATTTTCAAAAAAACTAAAACTAAATGGTTACCAACCTAGTGTTCAGGTTTCTGTTCCTTACATTAGTTCATAATCTTTACCTTCAGGTAGTTTAGTTAGCAATAGACTGGGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAATCCATCAACATCAGCTATTGGTACAACTCTCATCGGTTCTCTGGTTTCTGGGATTTGCTACTCTATTTGTACAGATTTGTTGTCTTCAACATCCAGCAAATGTGCTTTCTCTTGTTTCCCCTTCGGGTACGATTTACAACCCATAAATGTTATTAACTTTCATCTTAAGTTAATGTTAAAGAATTTAGTTCCATATGTTATTATAGCTCAGGTTGATACGTCATGATATATCAAGTTTATGGTGCTCTAAACTTGTTGAGATCATCGTGATTGAATGATATATAGTATAATAGTAATATGACGATGAAGAAATTAAGCAAAACACCTGATTCTGAGACTTTCTTTCTTCACTAGCAAATTTAACTTTTCATTCATAAATCAGGCATGGGAGGCTCCAAATGTTAT

mRNA sequence

ATTTTTATAAGTAAATTTTCAAAAAAAAAAAAAGATATAAAAACTAGGAATCGTGGGGAAAAAAACTAAAGGCAGATTGGAGTGGAAATTGATCAGAAACAGAAAAGCTTTAAGGAAAGCTTTAGAACGACGACGAAGAAGAAGAAGACTGAAGGAATCGAAGAAGAAGATGCCATTGGGAAAATATTACTGCGACTACTGCGATAAGCAATTTCAAGATACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAAAGGTTCTAAACTCCATCTCCTCTCTTCTTTCTCCCTTTTCCCCTCGTTTTTTCCCCCCTCAATTCTTCCCTTTTCCCTTGCAGATTCAAATCAATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATGACAATACGCACAACTCCAGTTCCCACCCCATTGCAGGTTTCCCGGAAAATAATCAACCACCAAATATTTCGGTTAATCGGTTTGTAGACGGCAGCTCTTCTTCCGCAGGTAGTTTAGTTAGCAATAGACTGGGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAATCCATCAACATCAGCTATTGGTACAACTCTCATCGGTTCTCTGGTTTCTGGGATTTGCTACTCTATTTGTACAGATTTGTTGTCTTCAACATCCAGCAAATGTGCTTTCTCTTGTTTCCCCTTCGGGCATGGGAGGCTCCAAATGTTAT

Coding sequence (CDS)

ATGCCATTGGGAAAATATTACTGCGACTACTGCGATAAGCAATTTCAAGATACTCCCTTTGCTCGAAAACGCCATCTTCAAAGTCTCTCCCATCAGAAGGCCAAAGCTCTATGGTTCGACTCCTTCAAAGGTTCTAAACTCCATCTCCTCTCTTCTTTCTCCCTTTTCCCCTCGTTTTTTCCCCCCTCAATTCTTCCCTTTTCCCTTGCAGATTCAAATCAATCTTTCCCTCATTCCTTCCACTTCCGACCACGCATCTGTAATCGATTCCTCTCTACGGGGTTTTGCCAATACGGTGATTCTTGTAAATATTTTCACCCCAACAACAACAATGACAATACGCACAACTCCAGTTCCCACCCCATTGCAGGTTTCCCGGAAAATAATCAACCACCAAATATTTCGGTTAATCGGTTTGTAGACGGCAGCTCTTCTTCCGCAGGTAGTTTAGTTAGCAATAGACTGGGAACATCATGGGGCAATTTACCTCCATCACTGATGCCTCCTCCAGAGGGTGGATACCCACCTCTTCCTTTCGTAGATTGGGGATAA

Protein sequence

MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFFPPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTHNSSSHPIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYPPLPFVDWG

Homology

[Close]

BLAST of PI0010529 vs. ExPASy Swiss-Prot
Match: Q0JP11 (Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0252200 PE=2 SV=2)

HSP 1 Score: 152.5 bits (384), Expect = 4.5e-36
Identity = 84/185 (45.41%), Postives = 103/185 (55.68%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MPLGKYYCDYC+KQFQDTP ARKRHL    H +A+ALW+D+ +  +LH     +      
Sbjct: 1   MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGA------ 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTHNSSSH 120
           PP +     A               +C  F+ TG C++GDSC+YFHP     N   + S 
Sbjct: 61  PPLLHQPGAAAIG------------VCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSG 120

Query: 121 PIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLG--TSWGNLPPSLMPPPEGGYPPLP 180
           P++G          S   FV   ++   S   N LG  TSWGNLPPSL PPPEGGYPP P
Sbjct: 121 PVSGPMAQQSNIQGSQPNFVGYQAADGSSFSGNILGGHTSWGNLPPSLRPPPEGGYPPFP 167

Query: 181 FVDWG 184
           FVDWG
Sbjct: 181 FVDWG 167

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BLAST of PI0010529 vs. ExPASy Swiss-Prot
Match: Q2TA39 (Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 9.2e-13
Identity = 55/200 (27.50%), Postives = 84/200 (42.00%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFFPPSI 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK LW+D F+ +   LL              
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKLWYDMFRDAAAILLD------------- 63

Query: 65  LPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNN--------DNTHN 124
                 + N+          R C +FL TG C +G +C++ H +  +        +    
Sbjct: 64  ------EQNK----------RPCRKFLLTGQCDFGSNCRFSHMSERDLQELSVQVEEERR 123

Query: 125 SSSHPIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNR----------LGTSW---GNLP 184
           +   P+    +  + P + +  +++  +    S  S+R              W     LP
Sbjct: 124 AREWPL----DVAELPEVCLEDWLEKRAKRLSSAPSSRAEPVRATVFQYPVGWPPVQELP 170

[Close]

BLAST of PI0010529 vs. ExPASy Swiss-Prot
Match: Q9CQR5 (Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.3e-11
Identity = 56/196 (28.57%), Postives = 82/196 (41.84%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFFPPSI 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+ +   LL              
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLD------------- 63

Query: 65  LPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNN--------DNTHN 124
                 + N+          R C +FL TG C +G +C++ H +  +        +    
Sbjct: 64  ------EQNK----------RPCRKFLLTGQCDFGSNCRFSHMSEQDLQELSVQVEEERR 123

Query: 125 SSSHPI--AGFPENNQPPNIS--VNRFVDGSSSSAGSLVSN--RLGTSW---GNLPPSLM 184
           +   P+  A  PE +    +     R     SS A  + +   +    W     LPPSL 
Sbjct: 124 AREWPLETAELPEGHLEDWLEKRAKRLSSAPSSRAEPIRTTVFQYPVGWPPMQELPPSLR 170

[Close]

BLAST of PI0010529 vs. ExPASy Swiss-Prot
Match: Q9UDW3 (Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-11
Identity = 55/196 (28.06%), Postives = 79/196 (40.31%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFFPPSI 64
           +Y+CDYCD+ FQD    RK+HL  L H KAK +W+D F+ +   LL              
Sbjct: 4   RYFCDYCDRSFQDNLHNRKKHLNGLQHLKAKKVWYDMFRDAAAILLD------------- 63

Query: 65  LPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNN----------DNT 124
                 + N+          R C +FL TG C +G +C++ H +  +          +  
Sbjct: 64  ------EQNK----------RPCRKFLLTGQCDFGSNCRFSHMSERDLQELSIQVEEERR 123

Query: 125 HNSSSHPIAGFPENNQPPNIS--VNRFVDGSSSSAGSLVSN--RLGTSW---GNLPPSLM 184
                      PE +    +     R     SS A  + +   +    W     LPPSL 
Sbjct: 124 AREWLLDAPELPEGHLEDWLEKRAKRLSSAPSSRAEPIRTTVFQYPVGWPPVQELPPSLR 170

[Close]

BLAST of PI0010529 vs. ExPASy Swiss-Prot
Match: Q6AXL8 (Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.6e-11
Identity = 52/204 (25.49%), Postives = 81/204 (39.71%), Query Frame = 0


Query: 5   KYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFFPPSI 64
           +YYCDYCD+ FQD    RK+HL  + H +AK  WFD+F+ +                   
Sbjct: 4   RYYCDYCDRSFQDNLHNRKKHLNGVQHHRAKKAWFDNFRDAA------------------ 63

Query: 65  LPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNN--------DNTHN 124
              +L +  +S          +C +F+ TG C +G SC++ H +           D+   
Sbjct: 64  ---TLLNDERS--------KEVCRKFVQTGQCVFGTSCRFSHMSEKQMKMLEQKIDDEKR 123

Query: 125 SSSHPIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRL-----------------GTSW 184
                    P+ +     SV+ ++        +L S R+                   S 
Sbjct: 124 QKED-----PDQDGSSERSVDEWLSRREKKLAALTSGRVLRMEEEECTENIEIPPYLLSI 173

[Close]

BLAST of PI0010529 vs. ExPASy TrEMBL
Match: A0A5D3CFN3 (Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004580 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.3e-80
Identity = 148/184 (80.43%), Postives = 153/184 (83.15%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK                 
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK----------------- 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP-NNNNDNTHNSSS 120
                     DSNQ+FPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP NN+NDNTHNSSS
Sbjct: 61  ----------DSNQTFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSS 120

Query: 121 HPIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYPPLPF 180
           HPIAGFPENNQPPN+  NRFVDG+SSS GSLVS+RLGTSWGNLPPSLMPPPEGGYPPLPF
Sbjct: 121 HPIAGFPENNQPPNVPFNRFVDGNSSSTGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPF 157

Query: 181 VDWG 184
           VDWG
Sbjct: 181 VDWG 157

[Close]

BLAST of PI0010529 vs. ExPASy TrEMBL
Match: A0A1S3BQ25 (zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC103492103 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 5.3e-80
Identity = 148/184 (80.43%), Postives = 153/184 (83.15%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK                 
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK----------------- 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP-NNNNDNTHNSSS 120
                     DSNQ+FPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP NN+NDNTHNSSS
Sbjct: 61  ----------DSNQTFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSS 120

Query: 121 HPIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYPPLPF 180
           HPIAGFPENNQPPN+  NRFVDG+SSS GSLVS+RLGTSWGNLPPSLMPPPEGGYPPLPF
Sbjct: 121 HPIAGFPENNQPPNVPFNRFVDGNSSSTGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPF 157

Query: 181 VDWG 184
           VDWG
Sbjct: 181 VDWG 157

[Close]

BLAST of PI0010529 vs. ExPASy TrEMBL
Match: A0A0A0M1B0 (C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G560650 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.5e-79
Identity = 144/183 (78.69%), Postives = 152/183 (83.06%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK                 
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK----------------- 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTHNSSSH 120
                     D NQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNT+NSSS+
Sbjct: 61  ----------DFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSY 120

Query: 121 PIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYPPLPFV 180
           P+AGFPEN QPPN+ VNRFVDG+SSS GSL+S+RLGTSWGNLPPSLMPPP+GGYPPLPFV
Sbjct: 121 PMAGFPENYQPPNVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFV 156

Query: 181 DWG 184
           DWG
Sbjct: 181 DWG 156

[Close]

BLAST of PI0010529 vs. ExPASy TrEMBL
Match: A0A6J1EU59 (zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LOC111437782 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.2e-58
Identity = 123/183 (67.21%), Postives = 133/183 (72.68%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+                 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFR----------------- 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTHNSSSH 120
                     DSNQ   H+  F  R+CNRFL+TGFCQYGDSC YFH NN   N   SSSH
Sbjct: 61  ----------DSNQPLSHA--FPTRLCNRFLTTGFCQYGDSCNYFHSNN---NPQYSSSH 120

Query: 121 PIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYPPLPFV 180
           PIAGFPENNQ PNI VN+F++GSS + GSL  +RL TSWGNLPPSLMPPPEGGYPPLPFV
Sbjct: 121 PIAGFPENNQAPNIPVNQFMEGSSLT-GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFV 148

Query: 181 DWG 184
           DWG
Sbjct: 181 DWG 148

[Close]

BLAST of PI0010529 vs. ExPASy TrEMBL
Match: A0A6J1JFY8 (zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111486532 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.7e-58
Identity = 123/183 (67.21%), Postives = 133/183 (72.68%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+                 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFR----------------- 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTHNSSSH 120
                     DSNQ  P S  F  R+CNRFL+TGFCQYGDSCKYFH  N   N   SSS 
Sbjct: 61  ----------DSNQ--PFSDAFGTRVCNRFLTTGFCQYGDSCKYFHSKN---NLQYSSSQ 120

Query: 121 PIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYPPLPFV 180
           PIAGFPENNQ PN+ VN+F++GSS + GSL  +RL TSWGNLPPSLMPPPEGGYPPLPFV
Sbjct: 121 PIAGFPENNQAPNVPVNQFMEGSSLT-GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFV 148

Query: 181 DWG 184
           DWG
Sbjct: 181 DWG 148

[Close]

BLAST of PI0010529 vs. NCBI nr
Match: XP_008450521.1 (PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA0050958.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa] >TYK10305.1 zinc finger CCCH domain-containing protein 3 [Cucumis melo var. makuwa])

HSP 1 Score: 307.0 bits (785), Expect = 1.1e-79
Identity = 148/184 (80.43%), Postives = 153/184 (83.15%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK                 
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK----------------- 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP-NNNNDNTHNSSS 120
                     DSNQ+FPHSFHFRPRICNRFLSTGFCQYGDSCKYFHP NN+NDNTHNSSS
Sbjct: 61  ----------DSNQTFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPKNNHNDNTHNSSS 120

Query: 121 HPIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYPPLPF 180
           HPIAGFPENNQPPN+  NRFVDG+SSS GSLVS+RLGTSWGNLPPSLMPPPEGGYPPLPF
Sbjct: 121 HPIAGFPENNQPPNVPFNRFVDGNSSSTGSLVSDRLGTSWGNLPPSLMPPPEGGYPPLPF 157

Query: 181 VDWG 184
           VDWG
Sbjct: 181 VDWG 157

[Close]

BLAST of PI0010529 vs. NCBI nr
Match: XP_004135569.1 (zinc finger CCCH domain-containing protein 3 [Cucumis sativus] >KGN65981.1 hypothetical protein Csa_007019 [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 9.3e-79
Identity = 144/183 (78.69%), Postives = 152/183 (83.06%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK                 
Sbjct: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFK----------------- 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTHNSSSH 120
                     D NQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNT+NSSS+
Sbjct: 61  ----------DFNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTYNSSSY 120

Query: 121 PIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYPPLPFV 180
           P+AGFPEN QPPN+ VNRFVDG+SSS GSL+S+RLGTSWGNLPPSLMPPP+GGYPPLPFV
Sbjct: 121 PMAGFPENYQPPNVPVNRFVDGNSSSTGSLISDRLGTSWGNLPPSLMPPPDGGYPPLPFV 156

Query: 181 DWG 184
           DWG
Sbjct: 181 DWG 156

[Close]

BLAST of PI0010529 vs. NCBI nr
Match: XP_038879279.1 (zinc finger CCCH domain-containing protein 3 [Benincasa hispida])

HSP 1 Score: 261.2 bits (666), Expect = 6.9e-66
Identity = 133/186 (71.51%), Postives = 142/186 (76.34%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSFK                 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFK----------------- 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNN--NNDNTHNSS 120
                     D NQ   H+  FRP  CNRFL+TGFCQYGDSCKYFHPNN  NN+NTHNS+
Sbjct: 61  ----------DPNQPLFHA--FRPGFCNRFLTTGFCQYGDSCKYFHPNNNYNNNNTHNST 120

Query: 121 SHPIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLG-TSWGNLPPSLMPPPEGGYPPL 180
           SHPIAGFPENNQPPN  VN+F DGSS + GSLVS+ +G TSWGNLPPSLMPPPEGGYPPL
Sbjct: 121 SHPIAGFPENNQPPNFPVNQFADGSSFT-GSLVSDSMGRTSWGNLPPSLMPPPEGGYPPL 156

Query: 181 PFVDWG 184
           PFVDWG
Sbjct: 181 PFVDWG 156

[Close]

BLAST of PI0010529 vs. NCBI nr
Match: XP_022931617.1 (zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618.1 zinc finger CCCH domain-containing protein 3 [Cucurbita moschata])

HSP 1 Score: 236.1 bits (601), Expect = 2.4e-58
Identity = 123/183 (67.21%), Postives = 133/183 (72.68%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSH KAKALWFDSF+                 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHHKAKALWFDSFR----------------- 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTHNSSSH 120
                     DSNQ   H+  F  R+CNRFL+TGFCQYGDSC YFH NN   N   SSSH
Sbjct: 61  ----------DSNQPLSHA--FPTRLCNRFLTTGFCQYGDSCNYFHSNN---NPQYSSSH 120

Query: 121 PIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYPPLPFV 180
           PIAGFPENNQ PNI VN+F++GSS + GSL  +RL TSWGNLPPSLMPPPEGGYPPLPFV
Sbjct: 121 PIAGFPENNQAPNIPVNQFMEGSSLT-GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFV 148

Query: 181 DWG 184
           DWG
Sbjct: 181 DWG 148

[Close]

BLAST of PI0010529 vs. NCBI nr
Match: XP_022989487.1 (zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_022989488.1 zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima])

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-57
Identity = 123/183 (67.21%), Postives = 133/183 (72.68%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MPLGKYYCDYC+KQFQDTPFARKRHLQSLSHQKAKALWFDSF+                 
Sbjct: 1   MPLGKYYCDYCEKQFQDTPFARKRHLQSLSHQKAKALWFDSFR----------------- 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTHNSSSH 120
                     DSNQ  P S  F  R+CNRFL+TGFCQYGDSCKYFH  N   N   SSS 
Sbjct: 61  ----------DSNQ--PFSDAFGTRVCNRFLTTGFCQYGDSCKYFHSKN---NLQYSSSQ 120

Query: 121 PIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYPPLPFV 180
           PIAGFPENNQ PN+ VN+F++GSS + GSL  +RL TSWGNLPPSLMPPPEGGYPPLPFV
Sbjct: 121 PIAGFPENNQAPNVPVNQFMEGSSLT-GSL--DRLRTSWGNLPPSLMPPPEGGYPPLPFV 148

Query: 181 DWG 184
           DWG
Sbjct: 181 DWG 148

[Close]

BLAST of PI0010529 vs. TAIR 10
Match: AT5G26749.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 146.0 bits (367), Expect = 3.0e-35
Identity = 80/183 (43.72%), Postives = 100/183 (54.64%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MP GKYYCDYC+K+FQDT  ARKRHLQS  H +AKALW+ S     ++            
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVN------------ 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRPRICNRFLSTGFCQYGDSCKYFHPNNNNDNTHNSSSH 120
            P +  F+                 +CNRF+++ FC +GDSC+YFHPNNN  +T      
Sbjct: 61  -PQVSNFATKG--------------LCNRFITSNFCPFGDSCRYFHPNNNTGST------ 120

Query: 121 PIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYPPLPFV 180
              GF  N Q     +N+     S+     VS R GT W +LPPSL PPPE GYP LPF+
Sbjct: 121 ---GFTNNTQLRVDMLNQQHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYPQLPFI 147

Query: 181 DWG 184
           DWG
Sbjct: 181 DWG 147

[Close]

BLAST of PI0010529 vs. TAIR 10
Match: AT5G26749.2 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 137.1 bits (344), Expect = 1.4e-32
Identity = 81/188 (43.09%), Postives = 100/188 (53.19%), Query Frame = 0


Query: 1   MPLGKYYCDYCDKQFQDTPFARKRHLQSLSHQKAKALWFDSFKGSKLHLLSSFSLFPSFF 60
           MP GKYYCDYC+K+FQDT  ARKRHLQS  H +AKALW+ S     ++            
Sbjct: 1   MPSGKYYCDYCEKEFQDTQVARKRHLQSKPHLRAKALWYSSSSSDLVN------------ 60

Query: 61  PPSILPFSLADSNQSFPHSFHFRP--RICNRFLS---TGFCQYGDSCKYFHPNNNNDNTH 120
            P +  F+       F  S        +C+ FL+     FC +GDSC+YFHPNNN  +T 
Sbjct: 61  -PQVSNFATKGLCNRFITSVRRIDFVSLCSSFLAISGCNFCPFGDSCRYFHPNNNTGST- 120

Query: 121 NSSSHPIAGFPENNQPPNISVNRFVDGSSSSAGSLVSNRLGTSWGNLPPSLMPPPEGGYP 180
                   GF  N Q     +N+     S+     VS R GT W +LPPSL PPPE GYP
Sbjct: 121 --------GFTNNTQLRVDMLNQQHIQGSTLNRDFVSGRPGTGWFDLPPSLKPPPEQGYP 166

Query: 181 PLPFVDWG 184
            LPF+DWG
Sbjct: 181 QLPFIDWG 166

The following BLAST results are available for this feature:

BLAST of PI0010529 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q0JP11	4.5e-36	45.41	Zinc finger CCCH domain-containing protein 3 OS=Oryza sativa subsp. japonica OX=...	[more]
Q2TA39	9.2e-13	27.50	Zinc finger matrin-type protein 5 OS=Bos taurus OX=9913 GN=ZMAT5 PE=2 SV=1	[more]
Q9CQR5	1.3e-11	28.57	Zinc finger matrin-type protein 5 OS=Mus musculus OX=10090 GN=Zmat5 PE=2 SV=1	[more]
Q9UDW3	3.9e-11	28.06	Zinc finger matrin-type protein 5 OS=Homo sapiens OX=9606 GN=ZMAT5 PE=1 SV=1	[more]
Q6AXL8	6.6e-11	25.49	Zinc finger matrin-type protein 5 OS=Danio rerio OX=7955 GN=zmat5 PE=2 SV=1	[more]

BLAST of PI0010529 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CFN3	5.3e-80	80.43	Zinc finger CCCH domain-containing protein 3 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BQ25	5.3e-80	80.43	zinc finger CCCH domain-containing protein 3 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A0A0M1B0	4.5e-79	78.69	C3H1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G560650 P...	[more]
A0A6J1EU59	1.2e-58	67.21	zinc finger CCCH domain-containing protein 3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1JFY8	5.7e-58	67.21	zinc finger CCCH domain-containing protein 3 isoform X1 OS=Cucurbita maxima OX=3...	[more]

BLAST of PI0010529 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008450521.1	1.1e-79	80.43	PREDICTED: zinc finger CCCH domain-containing protein 3 [Cucumis melo] >KAA00509...	[more]
XP_004135569.1	9.3e-79	78.69	zinc finger CCCH domain-containing protein 3 [Cucumis sativus] >KGN65981.1 hypot...	[more]
XP_038879279.1	6.9e-66	71.51	zinc finger CCCH domain-containing protein 3 [Benincasa hispida]	[more]
XP_022931617.1	2.4e-58	67.21	zinc finger CCCH domain-containing protein 3 [Cucurbita moschata] >XP_022931618....	[more]
XP_022989487.1	1.2e-57	67.21	zinc finger CCCH domain-containing protein 3 isoform X1 [Cucurbita maxima] >XP_0...	[more]

BLAST of PI0010529 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G26749.1	3.0e-35	43.72	C2H2 and C2HC zinc fingers superfamily protein	[more]
AT5G26749.2	1.4e-32	43.09	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 81..108 e-value: 2.2E-4 score: 30.6
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 83..107 e-value: 3.4E-7 score: 30.0
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 82..109 score: 14.004407
IPR003604	Matrin/U1-C-like, C2H2-type zinc finger	SMART	SM00451	ZnF_U1_5	coord: 3..38 e-value: 3.6E-5 score: 33.2
IPR013085	U1-C, C2H2-type zinc finger	PFAM	PF06220	zf-U1	coord: 5..36 e-value: 2.1E-9 score: 37.0
None	No IPR available	GENE3D	4.10.1000.10		coord: 73..137 e-value: 4.0E-6 score: 28.7
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 3..50 e-value: 7.6E-9 score: 37.5
None	No IPR available	PANTHER	PTHR16465	NUCLEASE-RELATED	coord: 69..183 coord: 1..45
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 79..109
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 4..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010529.3	PI0010529.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005689	U12-type spliceosomal complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding