PI0010512 (gene) Melon (PI 482460) v1

Overview
NamePI0010512
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Locationchr05: 14992986 .. 14993180 (-)
RNA-Seq ExpressionPI0010512
SyntenyPI0010512
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTCATTAAGGATTATGATTGTACTATCGTATATCACCTTAGAAAAGTTAATGTAATAGCTAATGCGTTGAGCAGAAAAATTTCAAGTAAAGGGAGAATAGCCTTGCTAAGGAAATTAAAAGGTTGCAAGGTAATCATAAACACAAGATCAATTGGAAATTTAATAGCTCGTTTTCAAGTTAAGGTTTAG

mRNA sequence

ATGGAGCTCATTAAGGATTATGATTGTACTATCGTATATCACCTTAGAAAAGTTAATGTAATAGCTAATGCGTTGAGCAGAAAAATTTCAAGTAAAGGGAGAATAGCCTTGCTAAGGAAATTAAAAGGTTGCAAGGTAATCATAAACACAAGATCAATTGGAAATTTAATAGCTCGTTTTCAAGTTAAGGTTTAG

Coding sequence (CDS)

ATGGAGCTCATTAAGGATTATGATTGTACTATCGTATATCACCTTAGAAAAGTTAATGTAATAGCTAATGCGTTGAGCAGAAAAATTTCAAGTAAAGGGAGAATAGCCTTGCTAAGGAAATTAAAAGGTTGCAAGGTAATCATAAACACAAGATCAATTGGAAATTTAATAGCTCGTTTTCAAGTTAAGGTTTAG

Protein sequence

MELIKDYDCTIVYHLRKVNVIANALSRKISSKGRIALLRKLKGCKVIINTRSIGNLIARFQVKV
Homology
[Close]
BLAST of PI0010512 vs. ExPASy TrEMBL
Match: A0A5D3DMM3 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001300 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.0e-14
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 1   MELIKDYDCTIVYHLRKVNVIANALSRKISS---KGRIALLRKLKGCKVIINTRSIGNLI 60
           MELIKDYDCTI+YHL K NV A+ALSRK SS   KG++ALL +L+ CK I+N R IGNLI
Sbjct: 40  MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIGNLI 99

Query: 61  ARFQVK 64
           ARFQ K
Sbjct: 100 ARFQDK 105

[Close]
BLAST of PI0010512 vs. ExPASy TrEMBL
Match: A0A5A7UWA6 (CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001920 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.6e-13
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 1  MELIKDYDCTIVYHLRKVNVIANALSRKISS---KGRIALLRKLKGCKVIINTRSIGNLI 60
          M+LIKDYDCTI YHL K N+IA+ALS KI S   +GR+ALLR+LKG K I+  R+ GNL+
Sbjct: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60

Query: 61 ARFQVK 64
          ARFQVK
Sbjct: 61 ARFQVK 66

[Close]
BLAST of PI0010512 vs. ExPASy TrEMBL
Match: A0A5A7VIK8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.4e-13
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 1  MELIKDYDCTIVYHLRKVNVIANALSRKISS---KGRIALLRKLKGCKVIINTRSIGNLI 60
          M+LIKDYDCTI Y+ RKVNVIA+ALSRK  S   KGR+ALL+KL+G KV++N  + GN +
Sbjct: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60

Query: 61 ARFQVK 64
          ARFQVK
Sbjct: 61 ARFQVK 66

[Close]
BLAST of PI0010512 vs. ExPASy TrEMBL
Match: A0A5A7UMR3 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold437G00250 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.4e-11
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 1  MELIKDYDCTIVYHLRKVNVIANALSRKISS---KGRIALLRKLKGCKVIINTRSIGNLI 60
          MELIKDY+ TI YH  K NV+ANALSRK  S   KGRIA +++L+ CK I+NT   GNLI
Sbjct: 1  MELIKDYNYTIAYHPGKANVVANALSRKNPSTEIKGRIAFVKELRCCKEILNTGLAGNLI 60

Query: 61 ARFQVK 64
          ARFQVK
Sbjct: 61 ARFQVK 66

[Close]
BLAST of PI0010512 vs. ExPASy TrEMBL
Match: A0A5A7SUU4 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00340 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 9.1e-11
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0 

Query: 1  MELIKDYDCTIVYHLRKVNVIANALSRK---ISSKGRIALLRKLKGCKVIINTRSIGNLI 60
          MELIKD+DCTIVYH  K NV+A+ LSRK   I S GRIALL++L+  K  +++ S+G+ +
Sbjct: 15 MELIKDFDCTIVYHTSKANVVADVLSRKSFDIESGGRIALLQELRDYKSTMSSGSVGSFV 74

Query: 61 ARFQVK 64
          ARFQVK
Sbjct: 75 ARFQVK 80

[Close]
BLAST of PI0010512 vs. NCBI nr
Match: KAA0059914.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 8.2e-14
Identity = 46/66 (69.70%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 1   MELIKDYDCTIVYHLRKVNVIANALSRKISS---KGRIALLRKLKGCKVIINTRSIGNLI 60
           MELIKDYDCTI+YHL K NV A+ALSRK SS   KG++ALL +L+ CK I+N R IGNLI
Sbjct: 40  MELIKDYDCTILYHLGKANVAADALSRKSSSKENKGKLALLWELRDCKTILNARLIGNLI 99

Query: 61  ARFQVK 64
           ARFQ K
Sbjct: 100 ARFQDK 105

[Close]
BLAST of PI0010512 vs. NCBI nr
Match: KAA0058456.1 (CCHC-type integrase [Cucumis melo var. makuwa] >TYK07290.1 CCHC-type integrase [Cucumis melo var. makuwa])

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-13
Identity = 44/66 (66.67%), Postives = 53/66 (80.30%), Query Frame = 0 

Query: 1  MELIKDYDCTIVYHLRKVNVIANALSRKISS---KGRIALLRKLKGCKVIINTRSIGNLI 60
          M+LIKDYDCTI YHL K N+IA+ALS KI S   +GR+ALLR+LKG K I+  R+ GNL+
Sbjct: 1  MKLIKDYDCTITYHLGKANIIADALSIKIPSPRNRGRMALLRELKGFKTILKARTSGNLM 60

Query: 61 ARFQVK 64
          ARFQVK
Sbjct: 61 ARFQVK 66

[Close]
BLAST of PI0010512 vs. NCBI nr
Match: KAA0067194.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 9.0e-13
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 0 

Query: 1  MELIKDYDCTIVYHLRKVNVIANALSRKISS---KGRIALLRKLKGCKVIINTRSIGNLI 60
          M+LIKDYDCTI Y+ RKVNVIA+ALSRK  S   KGR+ALL+KL+G KV++N  + GN +
Sbjct: 1  MKLIKDYDCTIAYYPRKVNVIADALSRKSLSPRNKGRMALLKKLRGFKVVLNAGTFGNPM 60

Query: 61 ARFQVK 64
          ARFQVK
Sbjct: 61 ARFQVK 66

[Close]
BLAST of PI0010512 vs. NCBI nr
Match: KAA0054749.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 2.9e-11
Identity = 43/66 (65.15%), Postives = 50/66 (75.76%), Query Frame = 0 

Query: 1  MELIKDYDCTIVYHLRKVNVIANALSRKISS---KGRIALLRKLKGCKVIINTRSIGNLI 60
          MELIKDY+ TI YH  K NV+ANALSRK  S   KGRIA +++L+ CK I+NT   GNLI
Sbjct: 1  MELIKDYNYTIAYHPGKANVVANALSRKNPSTEIKGRIAFVKELRCCKEILNTGLAGNLI 60

Query: 61 ARFQVK 64
          ARFQVK
Sbjct: 61 ARFQVK 66

[Close]
BLAST of PI0010512 vs. NCBI nr
Match: KAA0035002.1 (polyprotein [Cucumis melo var. makuwa] >TYK02342.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-10
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0 

Query: 1  MELIKDYDCTIVYHLRKVNVIANALSRK---ISSKGRIALLRKLKGCKVIINTRSIGNLI 60
          MELIKD+DCTIVYH  K NV+A+ LSRK   I S GRIALL++L+  K  +++ S+G+ +
Sbjct: 15 MELIKDFDCTIVYHTSKANVVADVLSRKSFDIESGGRIALLQELRDYKSTMSSGSVGSFV 74

Query: 61 ARFQVK 64
          ARFQVK
Sbjct: 75 ARFQVK 80

The following BLAST results are available for this feature:
BLAST of PI0010512 vs.
Match NameE-valueIdentityDescription
BLAST of PI0010512 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DMM34.0e-1469.70CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G... [more]
A0A5A7UWA62.6e-1366.67CCHC-type integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G... [more]
A0A5A7VIK84.4e-1366.67Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold38G002810 PE... [more]
A0A5A7UMR31.4e-1165.15DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7SUU49.1e-1159.09Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00340 PE... [more]
BLAST of PI0010512 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059914.18.2e-1469.70CCHC-type integrase [Cucumis melo var. makuwa] >TYK24861.1 CCHC-type integrase [... [more]
KAA0058456.15.3e-1366.67CCHC-type integrase [Cucumis melo var. makuwa] >TYK07290.1 CCHC-type integrase [... [more]
KAA0067194.19.0e-1366.67polyprotein [Cucumis melo var. makuwa][more]
KAA0054749.12.9e-1165.15DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0035002.11.9e-1059.09polyprotein [Cucumis melo var. makuwa] >TYK02342.1 polyprotein [Cucumis melo var... [more]
BLAST of PI0010512 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0010512.1PI0010512.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0016740 transferase activity