PI0010424 (gene) Melon (PI 482460) v1

Overview


Name	PI0010424
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	U6 snRNA-associated Sm-like protein LSm4
Location	chr01: 16440224 .. 16443745 (-)
RNA-Seq Expression	PI0010424
Synteny	PI0010424

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCCAATAACAGAATACTTTGATCCATTTGCTAGGGTAATACTGGTAATGGATGTAGATGACAAAGTTGTAGAAAATAATTTGAGATTACTGTCATATGAGCAGTAGCACTGGAGTCTATGATCCATTGTGTAGAGGAAAAAAGACAATGATTTATGTTACCTGAATTAGCAAAGGTTGTAATAGGGTCACATGCTAATGATGAAGGAGATGCTTCGACGAGTTTTGGTACTGTTGAGATTTATTAGACAAACCTTGGATAGATTGAGCTGCAATTGAATCAAATTAGACATCACTATGGGATCTTGTTCGGCCATAGGATGGTAACAACCACCCCAAGCTACACCAAATCAGCAGCCACAACAAACCAAATGAGCAAAAATAGCCACAAAATAAAACAAAACAGCCGCAACCATTAGAAACAATCGATTTTCTTTCAAATATTGTCACTTTTGAATGGATTTCAATGGAATCGAAGACACAAACTGATCGGAAACCAAGATCTGACATGCACCTAACCAATGATAGCCCAAATTGGAATAAAACAACAGCAAACTCTAAGAACAAAAGGGTATTTGTCCAAAGAACGTCACACCCGATTAAATTTCAAAAGAACCAAATGCACAAACCAATTGGAAAACGCAAATGGAGACGAACCCAGCACAAAATGGACCTCCCATGCACTCCCACACGCTGGAGTGTGGGGGATGAGGCAATGTCTTCTTTCTGGCAGTGCGTGAAGCTCATGCGTGGCTTCTTCCAGCGAGCAACGAACTCAGATAGGGGCAGTTGGTGGGGGTGTTCCTTCTGAGGTGAGCGGTGTCAACAAACGGCCACTCGTACTTGGTGATCCAAACTTAAACCCTAATGGAATGTAGCTGTCAAAGAATAAACAAATAGACTAATGTTCTAAACCCTAGATTTCTCTGATACCATGTTGTAGTTAGAGTGAAATATGAAATAACTCCCTTACTTCGTTCTATACAATATATATAGGCATACTCGGAAACCCGAAATAAAGACTAGTGAATTACAATAAAGGACAAAAGACTAATAAGCTCCTATAGTTACATATATACTATAATATGATCATCTGGGAACTTACATTTCTTTTGTTTTTTTTTTCTACAGGTAGTATCTACTTTGTACCTTTAAAGATGGTATGTTCCTGAACTTGTTTTTTCATTTGTTCCTGTTTTCCTTTTGGTCCATTATTAATTTTGCTCGTGTAACTTCAGTGTGTATTTATTCATTTAATGTCTCCGATAAATTTAATTATTTCCTTCAAATGTGTGCTTGTCACCTGTTGTTTCCTCTTTTCCCTTCATGGGTATCCTCTAATCGATATTTTTTATTGCAGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGGTAAGGGCTTTCTTTCAGTTGCCTTTCTGTTAATACACAGGTGAGCTTACATGCACCTAGAGTAAATTCAAGAGAGAGAATCACATTTGATTGCTACCTTAAAGTTTTGATTGATGTTTCAAATTGAGCCCCTGGAGCTTCTATTATGGTTATTGTTATCATTATTATTTCGGATTATTTTTGCTTGGTTCTTTAGTGCCACCACAGTGATGCATGGTGGTTGTATATGGCTTTGGTTTGTCTTGAGCTATTCTGGCTGTTGTCAAGGACTTCTATTTTAGGACTTCGTTCATGTGCTTGTTCTAAAAATGTATAATTTCTGTGTTGCAACAGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTGATCTGCACTTCTAAAGTAATGCACTTCTATTTTATGGATGATTTTTTTCTCTTTTGCATTTTTCTTCTTTCTCTAGGAGTTTGAACTTATAATGACTATGTTATCCAATTATCAAATGTCAGGATGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATCCGTGGTAACACAATCAAGTATTTGCGAGTTCCAGATGAGGTATTCATTGAAAACTGTTGCCTTTTTTACTGTTTAATTGTGTGATGTTTGATGCATCAGAGTACCTTACAAATAACATGTGGTTGTTGAACTAAAAAGTCAGTTGCCTTAATTTAGTTCTTTTTCCACTTCTGTCACATGCTTTTCATTTTATTTCTGGTTTCTAATATTATTTCCTCTCTTCTTTGACTTGTACTTTCACACAACTTTGTCATCATCTTTAACTTGTGAATGTGATCTTCTCGGCATCCACCAAAAAGTTATTTAATAAAACTGTTCCTTTTCTTTCTGATGATTTAAGTTATATCACTCCCTTCTTTTATTTGCCGTAACTATAGTAAATTCTCTAGTTTTTGTTGAACTGTTTCAATATTGTTAGCTCTTTCATACATGCATGGTCCTGAGTGTACACTTACATGCACTCCTGAAATGTTCTATTTCAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGGTATACTGTTATGCATTTTATCATATATTATGATTGTCAAATGAAATAAAAAGGTAAAATGTATTTTGCATTTAGGAAATTTGAAATTGTAAAACCAATTAATTCTTAAATTTCTCCCAAAACAAAAATAGTAAAAAAGTTAAAAAAATTAACTCTTAAATCTTTTCTTTCTGAAATCTTGTACAATATCCATGTTGTAAATCCAAAAAAGATGGACATTCAATAACATCTCATAAAAGACTAAATAATACATTGCTAATGTTTGCATGTATTGGACTCTTGATTGTCCAGAACATTTAATGAGTCTAGATAAACTATGCTATTATAGACCAAGATTAATTTTTCTTTTGCCCTTGGTTTCTGACAAGCAAGGAAACTGATGCTTTGACACCAAATTTTCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCAACAGAGGTAAACTAAACTGAATCTTTGTTATTTATGGAACATGAATTTGCTATTTTAGCTTCCCCATTTGATAACAGTTTTGCTTTTGCTTTTTTATGCCCTGTATAAACTATACCCCTTATCTATTTAATATTTTCTTCGTTTGGTTTTTCAACCTTTAAGAAGACTTGGGCCAAATTTTACAAATGAAATACAGGAGTTTCATAAACTATTTCCGTTTTTCAGTTTTCTAAAATTTGGCTTTGACTTCAAAGTTGACTTGGTAGGTTAGGAATCAATGGAAAAGGTTTAAATAGAAAAGAGTGTAAACAAGAAAAATGTTTGTAAAAAGAAAAGAAAAAAAAAAACTATAAACAAAAACGTTTACAAGTGGACTTCTTATCTCATCTTATTAATCTTGTTTTTTCTTTGTTTGTTTGTTTTCTCTGTCGATATAGTTGGAGGCAGGGGACGGGGTTGA

mRNA sequence

ATCCAATAACAGAATACTTTGATCCATTTGCTAGGGTAATACTGGTAATGGATGTAGATGACAAAGTTGTAGAAAATAATTTGAGATTACTGTCATATGAGCAGTAGCACTGGAGTCTATGATCCATTGTGTAGAGGAAAAAAGACAATGATTTATGTTACCTGAATTAGCAAAGGTTGTAATAGGGTCACATGCTAATGATGAAGGAGATGCTTCGACGAGTTTTGGTACTGTTGAGATTTATTAGACAAACCTTGGATAGATTGAGCTGCAATTGAATCAAATTAGACATCACTATGGGATCTTGTTCGGCCATAGGATGGTAACAACCACCCCAAGCTACACCAAATCAGCAGCCACAACAAACCAAATGAGCAAAAATAGCCACAAAATAAAACAAAACAGCCGCAACCATTAGAAACAATCGATTTTCTTTCAAATATTGTCACTTTTGAATGGATTTCAATGGAATCGAAGACACAAACTGATCGGAAACCAAGATCTGACATGCACCTAACCAATGATAGCCCAAATTGGAATAAAACAACAGCAAACTCTAAGAACAAAAGGGTATTTGTCCAAAGAACGTCACACCCGATTAAATTTCAAAAGAACCAAATGCACAAACCAATTGGAAAACGCAAATGGAGACGAACCCAGCACAAAATGGACCTCCCATGCACTCCCACACGCTGGAGTGTGGGGGATGAGGCAATGTAGTATCTACTTTGTACCTTTAAAGATGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTGATCTGCACTTCTAAAGATGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATCCGTGGTAACACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCAACAGAGTTGGAGGCAGGGGACGGGGTTGA

Coding sequence (CDS)

ATGATAGCCCAAATTGGAATAAAACAACAGCAAACTCTAAGAACAAAAGGGTATTTGTCCAAAGAACGTCACACCCGATTAAATTTCAAAAGAACCAAATGCACAAACCAATTGGAAAACGCAAATGGAGACGAACCCAGCACAAAATGGACCTCCCATGCACTCCCACACGCTGGAGTGTGGGGGATGAGGCAATGTAGTATCTACTTTGTACCTTTAAAGATGCTTCCTCTTTCCCTCCTAAAGACTGCTCAAGGACACCCAATGTTGGTGGAATTAAAAAATGGTGAGACTTACAACGGCCATTTGGTTAATTGTGACACATGGATGAACATTCATCTTCGGGAAGTGATCTGCACTTCTAAAGATGGTGATCGGTTTTGGCGAATGCCCGAATGTTATATCCGTGGTAACACAATCAAGTATTTGCGAGTTCCAGATGAGGTTATTGACAAAGTTCAGGAAGAAACCAAAAGCCGTGCAGATAGGAAACCTCTGGGTGTAGGGCGTGGAAGAGGAAGAGGGCGTGAGGATGGTCCTGGTGGCAGACCAGCTAAAGGAATGGGGCGAGGCTTTGATGATGGTGCGAAAGCTGCTTCTGGCGGCCGTGGAAAGGGTGGCCCTGGTGGGAAACCTGGTGCCAACAGAGTTGGAGGCAGGGGACGGGGTTGA

Protein sequence

MIAQIGIKQQQTLRTKGYLSKERHTRLNFKRTKCTNQLENANGDEPSTKWTSHALPHAGVWGMRQCSIYFVPLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG

Homology

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BLAST of PI0010424 vs. ExPASy Swiss-Prot
Match: Q43582 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 3.0e-58
Identity = 123/150 (82.00%), Postives = 127/150 (84.67%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGR-GREDGPGGRPAKGMGRGFD 194
           +RGNTIKYLRVPDEVIDKVQEE KSR DRKP GVGR R R GR+D   GR  KG+GRG D
Sbjct: 61  VRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDDSAVGRQPKGIGRGMD 120

Query: 195 DGAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           DG    + GRGKGGP  K G  R GGRGRG
Sbjct: 121 DG---GAKGRGKGGPSAKSG-GRGGGRGRG 146

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BLAST of PI0010424 vs. ExPASy Swiss-Prot
Match: Q9LGE6 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0256900 PE=2 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 3.3e-57
Identity = 124/151 (82.12%), Postives = 130/151 (86.09%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEET-KSRADRKPLGVGRGRGRGR-EDGPGGRPAKGMGRGF 194
           IRGNTIKYLRVPDEVIDKVQEET KSR+DR+P GVGRGRGRG     PGGR   G+GRG 
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGR---GIGRGQ 120

Query: 195 DDGAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           DDG     GGRG+GG GGK G  + GGRGRG
Sbjct: 121 DDGGSKGGGGRGRGGIGGK-GGIKGGGRGRG 147

[Close]

BLAST of PI0010424 vs. ExPASy Swiss-Prot
Match: Q9ZRU9 (Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN=LSM4 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.7e-56
Identity = 121/150 (80.67%), Postives = 126/150 (84.00%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELK+GETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMP+CY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRG-FD 194
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGRE+G G R  +G GR    
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREEGSGARQVRGAGRDVMM 120

Query: 195 DGAKAASGGRGKGGPGGKPGANRVGGRGRG 224
             AKA    RG+G   GK G    GGRGRG
Sbjct: 121 QVAKAWVEVRGRGASAGKSGGR--GGRGRG 148

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BLAST of PI0010424 vs. ExPASy Swiss-Prot
Match: F4K4E3 (Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.1e-52
Identity = 115/149 (77.18%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 194
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 195 GAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           GA+    GRG+G   GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

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BLAST of PI0010424 vs. ExPASy Swiss-Prot
Match: Q9QXA5 (U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 1.4e-39
Identity = 90/140 (64.29%), Postives = 102/140 (72.86%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQ HPMLVELKNGETYNGHLV+CD WMNI+LREVICTS+DGD+FWRMPECY
Sbjct: 1   MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRG-FD 194
           IRG+TIKYLR+PDE+ID V+EE            GRGRG  ++    GR   G GRG F 
Sbjct: 61  IRGSTIKYLRIPDEIIDMVREEAAK---------GRGRGGPQQKQQKGRGMGGAGRGVFG 120

Query: 195 DGAKAASGGRGKGGPGGKPG 214
              +    G G+G P  KPG
Sbjct: 121 GRGRGGIPGAGRGQPEKKPG 131

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BLAST of PI0010424 vs. ExPASy TrEMBL
Match: A0A0A0L3Q6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.6e-78
Identity = 155/170 (91.18%), Postives = 159/170 (93.53%), Query Frame = 0


Query: 54  ALPHAGVWGMRQCSIYFVPLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIH 113
           A P+  V  +   S+ F+ LKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIH
Sbjct: 75  ASPNLKVEVVSASSVCFISLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIH 134

Query: 114 LREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRG 173
           LREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRG
Sbjct: 135 LREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRG 194

Query: 174 RGREDGPGGRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           RGREDGPG RPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 195 RGREDGPGVRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG 244

[Close]

BLAST of PI0010424 vs. ExPASy TrEMBL
Match: A0A1S3BYD6 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929 PE=3 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.5e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 194
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 195 GAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of PI0010424 vs. ExPASy TrEMBL
Match: A0A6J1CRC5 (U6 snRNA-associated Sm-like protein LSm4 OS=Momordica charantia OX=3673 GN=LOC111013478 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 9.7e-76
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 194
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 195 GAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           G+KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GSKASSGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of PI0010424 vs. ExPASy TrEMBL
Match: A0A0A0K9I4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.7e-75
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 194
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 195 GAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of PI0010424 vs. ExPASy TrEMBL
Match: A0A6J1J2N4 (U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC111480701 PE=3 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 2.2e-75
Identity = 147/149 (98.66%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 194
           IRGNTIKYLRVPDEVIDKVQEETK+RADRKP GVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKTRADRKPPGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 195 GAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

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BLAST of PI0010424 vs. NCBI nr
Match: XP_038896461.1 (uncharacterized protein LOC120084721 [Benincasa hispida])

HSP 1 Score: 302.0 bits (772), Expect = 4.3e-78
Identity = 153/163 (93.87%), Postives = 155/163 (95.09%), Query Frame = 0


Query: 61  WGMRQCSIYFVPLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT 120
           W +   S+ FV LKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT
Sbjct: 150 WVVSASSVCFVSLKMLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICT 209

Query: 121 SKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGP 180
           SKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKP GVGRGRGRGREDGP
Sbjct: 210 SKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGRGREDGP 269

Query: 181 GGRPAKGMGRGFDDGAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           GGRPAKGMGRGFDD AKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 270 GGRPAKGMGRGFDDSAKAASGGRGKGGPGGKPGANRVGGRGRG 312

[Close]

BLAST of PI0010424 vs. NCBI nr
Match: XP_008454536.1 (PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454538.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_008454539.1 PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 3.1e-76
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 194
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 195 GAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of PI0010424 vs. NCBI nr
Match: XP_011653886.2 (probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740554.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740555.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740556.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_031740557.1 probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >KAE8649735.1 hypothetical protein Csa_012390 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 1.5e-75
Identity = 147/149 (98.66%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 194
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 195 GAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           GAKA++GGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKASTGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of PI0010424 vs. NCBI nr
Match: XP_022143617.1 (probable U6 snRNA-associated Sm-like protein LSm4 [Momordica charantia])

HSP 1 Score: 293.1 bits (749), Expect = 2.0e-75
Identity = 146/149 (97.99%), Postives = 149/149 (100.00%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 194
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLG+GRGRGRGREDGPGGRPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGIGRGRGRGREDGPGGRPAKGMGRGFDD 120

Query: 195 GAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           G+KA+SGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GSKASSGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of PI0010424 vs. NCBI nr
Match: XP_011659113.1 (sm-like protein LSM4 [Cucumis sativus] >KGN44471.1 hypothetical protein Csa_016908 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 3.4e-75
Identity = 148/149 (99.33%), Postives = 148/149 (99.33%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 194
           IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPG RPAKGMGRGFDD
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGVRPAKGMGRGFDD 120

Query: 195 GAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           GAKAASGGRGKGGPGGKPGANRVGGRGRG
Sbjct: 121 GAKAASGGRGKGGPGGKPGANRVGGRGRG 149

[Close]

BLAST of PI0010424 vs. TAIR 10
Match: AT5G27720.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 208.0 bits (528), Expect = 7.9e-54
Identity = 115/149 (77.18%), Postives = 119/149 (79.87%), Query Frame = 0


Query: 75  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 134
           MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
Sbjct: 1   MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 135 IRGNTIKYLRVPDEVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 194
           IRGNTIKYLRVPDEVIDKVQEE K+R DRKP GVGRGRGRG +DG               
Sbjct: 61  IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRGVDDG--------------- 120

Query: 195 GAKAASGGRGKGGPGGKPGANRVGGRGRG 224
           GA+    GRG+G   GK G NR  GRGRG
Sbjct: 121 GAR----GRGRGTSMGKMGGNRGAGRGRG 129

[Close]

BLAST of PI0010424 vs. TAIR 10
Match: AT1G20580.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 68.9 bits (167), Expect = 5.7e-12
Identity = 48/138 (34.78%), Postives = 75/138 (54.35%), Query Frame = 0


Query: 76  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 135
           +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 66

Query: 136 RGNTIKYLRVPD-----EVIDKVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGR 195
           RG+ ++++ +PD      +  ++    K ++    LGVGRGRG  R     G+PA G GR
Sbjct: 67  RGSKVRFMVIPDILKHAPMFKRLDARIKGKS--SSLGVGRGRGAMR-----GKPAAGPGR 126

Query: 196 GFDDGAKAASGGRGKGGP 209
           G        +GGRG   P
Sbjct: 127 G--------TGGRGAVPP 128

[Close]

BLAST of PI0010424 vs. TAIR 10
Match: AT1G76300.1 (snRNP core protein SMD3 )

HSP 1 Score: 65.1 bits (157), Expect = 8.3e-11
Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 76  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYI 135
           +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+KDG +  ++   +I
Sbjct: 7   IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 66

Query: 136 RGNTIKYLRVPDEVID-KVQEETKSRADRKPLGVGRGRGRGREDGPGGRPAKGMGRGFDD 195
           RG+ +++L +PD + +  + ++ + +     LGVGRGRG           AKG GRG   
Sbjct: 67  RGSLVRFLVIPDMLKNAPMFKDVRGKGKSASLGVGRGRGAAMR-------AKGTGRG--- 125

Query: 196 GAKAASGGRGKGGP 209
                 GGRG   P
Sbjct: 127 ----TGGGRGAVPP 125

[Close]

BLAST of PI0010424 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-08
Identity = 40/101 (39.60%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 91  VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPD--E 150
           +ELKNG   +G +   D  MN HL+ V  T K G     +    +RGN I+Y  +PD   
Sbjct: 17  IELKNGTIVHGTITGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNIRYYILPDSLN 76

Query: 151 VIDKVQEET------KSRADRKPLGVGRGRGRGREDGPGGR 184
           +   + E+T      K  A + P G GRGRGRGR  G GGR
Sbjct: 77  LETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 116

[Close]

BLAST of PI0010424 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 48.5 bits (114), Expect = 8.0e-06
Identity = 40/111 (36.04%), Postives = 53/111 (47.75%), Query Frame = 0


Query: 91  VELKNGETYNGHLVN----------CDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTI 150
           +ELKNG   +G + +           D  MN HL+ V  T K G     +    +RGN I
Sbjct: 17  IELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLK-GKNPVTLDHLSVRGNNI 76

Query: 151 KYLRVPD--EVIDKVQEET------KSRADRKPLGVGRGRGRGREDGPGGR 184
           +Y  +PD   +   + E+T      K  A + P G GRGRGRGR  G GGR
Sbjct: 77  RYYILPDSLNLETLLVEDTPRIKPKKPTAGKIPAGRGRGRGRGRGRGRGGR 126

The following BLAST results are available for this feature:

BLAST of PI0010424 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q43582	3.0e-58	82.00	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Nicotiana tabacum OX=4097 P...	[more]
Q9LGE6	3.3e-57	82.12	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Oryza sativa subsp. japonic...	[more]
Q9ZRU9	3.7e-56	80.67	Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica OX=28930 GN...	[more]
F4K4E3	1.1e-52	77.18	Sm-like protein LSM4 OS=Arabidopsis thaliana OX=3702 GN=LSM4 PE=1 SV=1	[more]
Q9QXA5	1.4e-39	64.29	U6 snRNA-associated Sm-like protein LSm4 OS=Mus musculus OX=10090 GN=Lsm4 PE=1 S...	[more]

BLAST of PI0010424 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3Q6	1.6e-78	91.18	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3...	[more]
A0A1S3BYD6	1.5e-76	100.00	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis melo OX=3656 GN=LOC103494929...	[more]
A0A6J1CRC5	9.7e-76	97.99	U6 snRNA-associated Sm-like protein LSm4 OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A0A0K9I4	1.7e-75	99.33	U6 snRNA-associated Sm-like protein LSm4 OS=Cucumis sativus OX=3659 GN=LSM4 PE=3...	[more]
A0A6J1J2N4	2.2e-75	98.66	U6 snRNA-associated Sm-like protein LSm4 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]

BLAST of PI0010424 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896461.1	4.3e-78	93.87	uncharacterized protein LOC120084721 [Benincasa hispida]	[more]
XP_008454536.1	3.1e-76	100.00	PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis melo] >XP_...	[more]
XP_011653886.2	1.5e-75	98.66	probable U6 snRNA-associated Sm-like protein LSm4 [Cucumis sativus] >XP_03174055...	[more]
XP_022143617.1	2.0e-75	97.99	probable U6 snRNA-associated Sm-like protein LSm4 [Momordica charantia]	[more]
XP_011659113.1	3.4e-75	99.33	sm-like protein LSM4 [Cucumis sativus] >KGN44471.1 hypothetical protein Csa_0169...	[more]

BLAST of PI0010424 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27720.1	7.9e-54	77.18	Small nuclear ribonucleoprotein family protein	[more]
AT1G20580.1	5.7e-12	34.78	Small nuclear ribonucleoprotein family protein	[more]
AT1G76300.1	8.3e-11	32.84	snRNP core protein SMD3	[more]
AT4G02840.1	3.8e-08	39.60	Small nuclear ribonucleoprotein family protein	[more]
AT4G02840.2	8.0e-06	36.04	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 79..145 e-value: 1.4E-20 score: 84.4
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 80..144 e-value: 1.6E-16 score: 59.7
None	No IPR available	GENE3D	2.30.30.100		coord: 75..157 e-value: 4.4E-37 score: 127.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..223
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..183
None	No IPR available	PANTHER	PTHR23338:SF42	SM-LIKE PROTEIN LSM4	coord: 75..211
IPR027141	Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 75..211
IPR034101	Sm-like protein Lsm4	CDD	cd01723	LSm4	coord: 76..151 e-value: 7.8549E-61 score: 183.161
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 77..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010424.1	PI0010424.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
biological_process	GO:0006772	thiamine metabolic process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0033962	P-body assembly
biological_process	GO:0006396	RNA processing
biological_process	GO:0009229	thiamine diphosphate biosynthetic process
biological_process	GO:0000387	spliceosomal snRNP assembly
biological_process	GO:0016310	phosphorylation
cellular_component	GO:0000932	P-body
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0005688	U6 snRNP
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0030975	thiamine binding
molecular_function	GO:0004788	thiamine diphosphokinase activity
molecular_function	GO:0017070	U6 snRNA binding