PI0010394 (gene) Melon (PI 482460) v1

Overview


Name	PI0010394
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	DUF4219 domain-containing protein
Location	chr01: 17065326 .. 17065613 (-)
RNA-Seq Expression	PI0010394
Synteny	PI0010394

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAAGAAATAACATGGTTCCATTCCAAGTCTCAATGCCCAACAAAAGCAACTATGATAATTGGAGTATCAAGATGAAGACTTTCCTTGGCTCACAAGATGTGTGTGAGATTGTAGAAAAAGAATACGTCGAATCAGAGAATGATGGTGGTTTTTCTCAAGCACAAAGGGATACTTTGAGAGATTCAAGAAAGAGAGACAAGAAGACTATTTATCTAATCCATCAAAGATTAGTTGACAATGCATTTGAGAAAGTTTCAGAAATAAAGACGATAAAAGTAGCATGA

mRNA sequence

ATGGTAAGAAATAACATGGTTCCATTCCAAGTCTCAATGCCCAACAAAAGCAACTATGATAATTGGAGTATCAAGATGAAGACTTTCCTTGGCTCACAAGATGTGTGTGAGATTGTAGAAAAAGAATACGTCGAATCAGAGAATGATGGTGGTTTTTCTCAAGCACAAAGGGATACTTTGAGAGATTCAAGAAAGAGAGACAAGAAGACTATTTATCTAATCCATCAAAGATTAGTTGACAATGCATTTGAGAAAGTTTCAGAAATAAAGACGATAAAAGTAGCATGA

Coding sequence (CDS)

ATGGTAAGAAATAACATGGTTCCATTCCAAGTCTCAATGCCCAACAAAAGCAACTATGATAATTGGAGTATCAAGATGAAGACTTTCCTTGGCTCACAAGATGTGTGTGAGATTGTAGAAAAAGAATACGTCGAATCAGAGAATGATGGTGGTTTTTCTCAAGCACAAAGGGATACTTTGAGAGATTCAAGAAAGAGAGACAAGAAGACTATTTATCTAATCCATCAAAGATTAGTTGACAATGCATTTGAGAAAGTTTCAGAAATAAAGACGATAAAAGTAGCATGA

Protein sequence

MVRNNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTLRDSRKRDKKTIYLIHQRLVDNAFEKVSEIKTIKVA

Homology

[Close]

BLAST of PI0010394 vs. ExPASy TrEMBL
Match: A0A2Z6M9T7 (CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_289180 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 4  NNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTLRDS 63
          NN VPFQV M  KSNYDNWS++M   LG+ DVCEIVEK  V  EN+G  SQ Q+D+LRDS
Sbjct: 3  NNGVPFQVPMLTKSNYDNWSLRMVALLGAHDVCEIVEKGLVIPENEGTLSQTQKDSLRDS 62

Query: 64 RKRDKKTIYLIHQRLVDNAFEKVSEIKTIKVA 96
          RKRDKK +YLI+Q L ++ FEKVS  KT K A
Sbjct: 63 RKRDKKALYLIYQGLDEDTFEKVSGAKTAKEA 94

[Close]

BLAST of PI0010394 vs. ExPASy TrEMBL
Match: A0A0D2ZYH9 (DUF4219 domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 2.0e-22
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 4  NNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTLRDS 63
          NN VPFQV +  KSNYDNWS+K+ T LG+ DV EIVEK + E ENDGG SQ Q+D LRDS
Sbjct: 3  NNGVPFQVPLLTKSNYDNWSLKLMTILGAHDVWEIVEKGFNEPENDGGLSQTQKDGLRDS 62

Query: 64 RKRDKKTIYLIHQRLVDNAFEKVSEIKTIKVA 96
          RKRDKK + LIHQ L ++ FEKV+  KT K A
Sbjct: 63 RKRDKKALCLIHQGLDEDTFEKVAGAKTSKEA 94

[Close]

BLAST of PI0010394 vs. ExPASy TrEMBL
Match: A0A2I0W8B3 (DUF4219 domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca021744 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 4.5e-22
Identity = 56/95 (58.95%), Postives = 70/95 (73.68%), Query Frame = 0


Query: 1  MVRNNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTL 60
          M  N M+PFQV   N SNYDNWSIKMK  LG QDV E++EK Y E +++   SQAQ+D+L
Sbjct: 1  MASNGMIPFQVPTLNNSNYDNWSIKMKALLGVQDVWEMIEKGYKEPQDESSLSQAQKDSL 60

Query: 61 RDSRKRDKKTIYLIHQRLVDNAFEKVSEIKTIKVA 96
          RDSRKRDKK +YLI Q L D++FEK+ + K+ K A
Sbjct: 61 RDSRKRDKKALYLIFQGLDDDSFEKIFDAKSAKEA 95

[Close]

BLAST of PI0010394 vs. ExPASy TrEMBL
Match: A0A6J0M5U4 (uncharacterized protein LOC108839444 OS=Raphanus sativus OX=3726 GN=LOC108839444 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.9e-20
Identity = 56/92 (60.87%), Postives = 67/92 (72.83%), Query Frame = 0


Query: 4  NNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTLRDS 63
          NN VP QV +  KSNYDNWS++M   LG+ DV EIVEK + E ENDGG SQ Q+D LRDS
Sbjct: 3  NNGVPLQVPLLTKSNYDNWSLRMMAILGAHDVWEIVEKGFNEPENDGGLSQTQKDGLRDS 62

Query: 64 RKRDKKTIYLIHQRLVDNAFEKVSEIKTIKVA 96
          RKRDKK + LI+Q L ++ FEKV+  KT K A
Sbjct: 63 RKRDKKALCLIYQGLDEDTFEKVAGAKTSKEA 94

[Close]

BLAST of PI0010394 vs. ExPASy TrEMBL
Match: Q9C536 (Copia-type polyprotein, putative OS=Arabidopsis thaliana OX=3702 GN=T18I24.5 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.2e-20
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 0


Query: 4  NNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTLRDS 63
          +N VPFQV +  KSNYDNWS++MK  LG+ DV EIVEK ++E EN+G  SQ Q+D LRDS
Sbjct: 3  SNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDS 62

Query: 64 RKRDKKTIYLIHQRLVDNAFEKVSEIKTIKVA 96
          RKRDKK + LI+Q L ++ FEKV E  + K A
Sbjct: 63 RKRDKKALCLIYQGLDEDTFEKVVEATSAKEA 94

[Close]

BLAST of PI0010394 vs. NCBI nr
Match: XP_020688719.2 (uncharacterized protein LOC110104092 [Dendrobium catenatum])

HSP 1 Score: 117.9 bits (294), Expect = 4.9e-23
Identity = 57/95 (60.00%), Postives = 73/95 (76.84%), Query Frame = 0


Query: 1  MVRNNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTL 60
          M  N M+PFQV   N SNYDNWSIKMK  LG+QDV E++EK Y E +++   SQAQ+D+L
Sbjct: 1  MASNGMIPFQVPTLNNSNYDNWSIKMKALLGAQDVWEMIEKGYKEPQDESSLSQAQKDSL 60

Query: 61 RDSRKRDKKTIYLIHQRLVDNAFEKVSEIKTIKVA 96
          RDSRKRDKK +YLI Q L D++FEK+S++K+ K A
Sbjct: 61 RDSRKRDKKALYLIFQGLDDDSFEKLSDVKSAKEA 95

[Close]

BLAST of PI0010394 vs. NCBI nr
Match: XP_028556025.1 (uncharacterized protein LOC110109975 [Dendrobium catenatum])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 57/95 (60.00%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MVRNNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTL 60
          M  N M+PFQV   N SNYDNWSIKMK  LG+QDV E++EK Y E +++   SQAQ+D+L
Sbjct: 1  MASNGMIPFQVPTLNNSNYDNWSIKMKALLGAQDVWEMIEKGYNEPQDESSLSQAQKDSL 60

Query: 61 RDSRKRDKKTIYLIHQRLVDNAFEKVSEIKTIKVA 96
          RDSRKRDKK +YLI Q L D++FEK+S+ K+ K A
Sbjct: 61 RDSRKRDKKALYLIFQGLDDDSFEKISDAKSAKEA 95

[Close]

BLAST of PI0010394 vs. NCBI nr
Match: XP_028216659.1 (uncharacterized protein LOC114398694 [Glycine soja] >XP_040868822.1 uncharacterized protein LOC102669108 [Glycine max])

HSP 1 Score: 116.7 bits (291), Expect = 1.1e-22
Identity = 59/95 (62.11%), Postives = 72/95 (75.79%), Query Frame = 0


Query: 1  MVRNNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTL 60
          M  ++MVPFQV + N +NYDNWSI MK  LG QDV EIVEK + E+EN    SQ QRD+L
Sbjct: 1  MTSSSMVPFQVPILNNNNYDNWSINMKALLGVQDVLEIVEKGHTETENKDSLSQTQRDSL 60

Query: 61 RDSRKRDKKTIYLIHQRLVDNAFEKVSEIKTIKVA 96
          RDSRKRDKK +YLI+Q L D+AFEKV + K++K A
Sbjct: 61 RDSRKRDKKALYLIYQGLNDDAFEKVLKAKSVKEA 95

[Close]

BLAST of PI0010394 vs. NCBI nr
Match: XP_013632414.1 (PREDICTED: uncharacterized protein LOC106337853, partial [Brassica oleracea var. oleracea])

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-22
Identity = 58/92 (63.04%), Postives = 70/92 (76.09%), Query Frame = 0


Query: 4   NNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTLRDS 63
           NN VPFQV +  KSNYDNWS++M   LG+ DVCEIVEK + E ENDGG SQ Q+D LRDS
Sbjct: 424 NNGVPFQVPLLTKSNYDNWSLRMMAILGAHDVCEIVEKGFNEPENDGGLSQTQKDGLRDS 483

Query: 64  RKRDKKTIYLIHQRLVDNAFEKVSEIKTIKVA 96
           RKRDKK + LI+QRL ++ FEKV+  +T K A
Sbjct: 484 RKRDKKALCLIYQRLDEDTFEKVAGARTSKEA 515

[Close]

BLAST of PI0010394 vs. NCBI nr
Match: XP_022558588.1 (uncharacterized protein LOC106430953, partial [Brassica napus])

HSP 1 Score: 115.5 bits (288), Expect = 2.4e-22
Identity = 59/92 (64.13%), Postives = 69/92 (75.00%), Query Frame = 0


Query: 4   NNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTLRDS 63
           NN VPFQV +  KSNYDNWS++M   LG+ DV EIVEK +VE ENDGG SQ Q+D LRDS
Sbjct: 18  NNGVPFQVPLLTKSNYDNWSLRMMAILGAHDVWEIVEKGFVEPENDGGLSQTQKDGLRDS 77

Query: 64  RKRDKKTIYLIHQRLVDNAFEKVSEIKTIKVA 96
           RKRDKK + LIHQ L ++ FEKV+  KT K A
Sbjct: 78  RKRDKKALCLIHQGLDEDTFEKVAGAKTSKEA 109

[Close]

BLAST of PI0010394 vs. TAIR 10
Match: AT1G48720.1 (unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 228; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-23
Identity = 53/90 (58.89%), Postives = 67/90 (74.44%), Query Frame = 0


Query: 4  NNMVPFQVSMPNKSNYDNWSIKMKTFLGSQDVCEIVEKEYVESENDGGFSQAQRDTLRDS 63
          +N VPFQV +  KSNYDNWS++MK  LG+ DV EIVEK ++E EN+G  SQ Q+D LRDS
Sbjct: 3  SNNVPFQVPVLTKSNYDNWSLRMKAILGAHDVWEIVEKGFIEPENEGSLSQTQKDGLRDS 62

Query: 64 RKRDKKTIYLIHQRLVDNAFEKVSEIKTIK 94
          RKRDKK + LI+Q L ++ FEKV E  + K
Sbjct: 63 RKRDKKALCLIYQGLDEDTFEKVVEATSAK 92

The following BLAST results are available for this feature:

BLAST of PI0010394 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010394 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2Z6M9T7	1.5e-22	64.13	CCHC-type domain-containing protein OS=Trifolium subterraneum OX=3900 GN=TSUD_28...	[more]
A0A0D2ZYH9	2.0e-22	64.13	DUF4219 domain-containing protein OS=Brassica oleracea var. oleracea OX=109376 P...	[more]
A0A2I0W8B3	4.5e-22	58.95	DUF4219 domain-containing protein OS=Dendrobium catenatum OX=906689 GN=MA16_Dca0...	[more]
A0A6J0M5U4	1.9e-20	60.87	uncharacterized protein LOC108839444 OS=Raphanus sativus OX=3726 GN=LOC108839444...	[more]
Q9C536	3.2e-20	58.70	Copia-type polyprotein, putative OS=Arabidopsis thaliana OX=3702 GN=T18I24.5 PE=...	[more]

BLAST of PI0010394 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020688719.2	4.9e-23	60.00	uncharacterized protein LOC110104092 [Dendrobium catenatum]	[more]
XP_028556025.1	1.1e-22	60.00	uncharacterized protein LOC110109975 [Dendrobium catenatum]	[more]
XP_028216659.1	1.1e-22	62.11	uncharacterized protein LOC114398694 [Glycine soja] >XP_040868822.1 uncharacteri...	[more]
XP_013632414.1	1.4e-22	63.04	PREDICTED: uncharacterized protein LOC106337853, partial [Brassica oleracea var....	[more]
XP_022558588.1	2.4e-22	64.13	uncharacterized protein LOC106430953, partial [Brassica napus]	[more]

BLAST of PI0010394 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48720.1	1.1e-23	58.89	unknown protein; Has 229 Blast hits to 229 proteins in 10 species: Archae - 0; B...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025314	Domain of unknown function DUF4219	PFAM	PF13961	DUF4219	coord: 15..40 e-value: 6.3E-7 score: 29.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010394.1	PI0010394.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding