PI0010293 (gene) Melon (PI 482460) v1

Overview


Name	PI0010293
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr01: 17670264 .. 17676243 (-)
RNA-Seq Expression	PI0010293
Synteny	PI0010293

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACAGCGAAACAGATGGGCAAGGCCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGATGGAAATTCCGGACACTGTCCGCTTCCTGGAAGGACGAATCGAGGAAGTGTCCGAGAAAGCTGATGCTATTGATGCGGTGACCGGTCGCCTCGACGGTTTACCCATAAAGGAGTTGTTAACAAGAGTTGACACCTTAGAGGCAAAGACTACCAGAATAAACTACGAACGTGGGAGCAGCTCGTCGAGCCCGGCTGCCCACGTAGAGGAACGGATTGGCGAGCTAGATAGCTCCCAAAAATCGATTGTCGAGATGATAAACGGCATGTCAGAGGACTTTCGTGCCGCTCTTGATGTCGTCAGGAATGAGATCGCAGACGTGAGTGCGAGAGTGAATCTCACAATGCGAGCCATGGCGAACCAAGCTCCAACTGGAGGAGCTATACAAGTTAATAGGGTGAAAATCCCCGAACCCAAGCCCTTCTGTGGGGCGAGGGACGCAAAAGCCTTAGAGAATTACATATTTGACATTGAACAGTACTTTCGGGCCACAAACACAGTTGCAGAAGAAGCAAAAGTGACACTGGCAACGATGCACCTGGCTGAGGATGCAAAGTTGTGGTGGAGGTCCCGATATGCCGAGATCCAAGAGGGACGTTGTGCGATAGACACATGGGACAGTTTAAAGAAAGAGCTACGCTCACAGTTCTTCCCCGAGAATGTCGAAATCCTTGCTCGACGGAAGTTACGTGAACTAAGACACACCGGTAGCATTCGAGATTATGTGAAACAGTTCGCAGGGCTGATGTTAGACATACGTGATATGTCCGAGAAAGATAAAATCTTCTGTTTTGTCGAAGGTCTAAAACCGTGGGCGAAGACCAAACTGTATGAACAGAGGATCCAAGAACTCTCATCGGCATACGCGGCGGCAGAGCGACTGTTTGACCTGTCCAGTGAGTCTCAAGATATGAGACGTCCCTCAAGTTCCTCATCTGGAGGAAACAAGAACAACCGTGCAAGTTCTCCAAAGGCCGGAGGCGGAGATAGGCGATCTAGTGGTGATCGCAGGCCCTTCCAATCGAATACTGGAAACACGGGGCGAGGACAGAACCCCCAAAATTCTCAGAATCGCCCCCTTGCCTGTTTCATATGTAAGGGGCCACATCTGGCGAGAGAATGCCCGAACCGAACTGCCTTCAACGCCTTTCAGGCTACCTTAACCTCAGACTCAGATGACAAGAATGGTCAAACAGAGGGAGAGGATGCCCAGGTAGAAGAAAGCGATAACCCCAGGATAGGAGCCCTGAAGCTTCTATCAGCCCTTCAGAGGAAAGGAGGAGAGGCAAATGAACCGGTGGAAAGGGGCCTAATGTATGTCGACACCTGGATCAACCAGAAGCCAGCGAAGAGTACCATGGTTGACTCCGGTGCGACCCACAACTTCATTACTGAGTCAGAAGCCCGCCGGTTAAGCCTCCGTTGGGAAAAGGATGCGGGAAAGATGAAGGCCGTGAACTCTGTCGCCCTACCCATTGTCGGTGTGGTAAGAAGAACGACAATAAGGTTAGGGGGATGGAATGGCCCCGGTGACTTCGTAGTCGTCAAGATGGATGACTTCGACGTAGTACTGGGAATGGAGTTTCTGCTAGAACATCAGGTAATACCGATGCCTCTGGCCAAATGCTTAGTGATCGCGGGGTCCACTCCCACCGTTGTGCAAGCCGACATTCGGCAGCCCAACGGGCTAAAAATGATTTCTGCCCTACAGTTCAAGAAGGGCCTCGTTCGCGATGAACCAACCTTCATGGCCGTTCCGCTTGAACCGCTGGGGGCTCAGGGAGAGATAGTTCCGAAGGACATTCTGTGTGTCCTAGAGAAGTATGATGGTGTGATGCCCGACAGTTTGCCCAAGACTCTACCGCCCAGGAGGGTGATTGATCATGAGATTGAACTGGTCCCAGGGGCAAAACCGCCCGCAAAGAATGCTTATCGTATGGCACCACCCGAGTTGGCCGAACTTCGGAAACAGTTAGATGAGTTGTTAAATGCTGGGTTCATTAGGGCCGCAAAAGCTCCATATGGGGCCCCGGTCCTTTTTCAGAAGAAGAAGGATGGGAGCCTACGTCTGTGCATCGACTATCGGGCACTGAATAAGCTCACAGTCCGCAATAAATACCCACTCCCCATAATCATGGATCTCTTTGACCGCCTACATGGGGCGAAATACTTCTCGAAACTGGATCTGCGGTCGGGGTATTACCAAGTACGGATTGCCGAAGGAGATGAGCCGAAGACAACGTGTGTCACCAGGTACGGGGCATTCGAGTTCCTCGTAATGCCATTTGGTCTCACCAATGCCCCGGCAACCTTTTGTACTCTAATGAACCAAGTCTTCCACGAATATCTCGATAAATTTGTGGTAGTCTACTTGGATGACATAGTGGTGTACAGTCCGACAATACAAGAGCATAGAGACCATCTCGAAAGGGTTTTTCAGAAGCTGAAGGAAAATCAATTGTACGTCAAACGAGAGAAGTGCTCCTTTGCTCAACAGCGGATAACTTTTCTGGGCCATGTGATAGAGTGCGGGCGGATCAGTATGGAAGATGAGAAGATCGCAGCGATCCGAGATTGGAAGTTGCCAACCACAGTTTCGAAACTGCGTTCCTTCCTCGGGTTAGCCAATTACTATCGGCGATTCGTGGACGGATTCTCCAAGAGAGTGAGCCCGATGACCGACTTACTGAAAAAGGACAGCCAGTGGAACTGGACTCCTGAGTGTCAGGCTGCGTTTGATGGGTTAAACAGGCCATGATCGAAGGGCCAGTGCTTGGGATTGCCGATGTGACAAGGCCCTTCGAGGTTGAAACCGATGCGTCAGATTTTGCCCTAGGGGGTGTCCTCCTGCAGAATGGACACCCTATAGCTTACGAGAGTCGGAAACTGAATGCGGCGGAGAGGAGGTATACAGTCTCTGAGAAGGAGATGCTCGCCGTCGTCCATTGTTTGAGAGCCTGGAGGCAGTATCTGCTGGGGTCTGCATTTGTTGTGAAAACGGATAATAGTGCTACTTGCCACTTCTTTAGTCAGCCAAAATTGACTTCGAAGTAGGCAAGGTGGCAAGACTTTCTAGCAGAGTTTGATTTCAGTTTCGAGCACAAGAAGGGGTCAAGTAATCAAGCAGCGGACGCACTAAGCCGAAAGAGCGAACATGCGGCCCTGTGCATGTTAGCTCATCTCCAGACAAGTAAGGTTGATGGGTCGATGCGCGACGCCTTACGAGAGTACCTTCAGAAAGATCCCTCTGCCCAAACAGTCATAGACTTAGCAACAGCTGGCAAGACCAGACAGTTTTGGGTAGAGGATGGCTTACTGGTGACAAAAGGAAACCGACTATATGTCCCTAGGGCAGGGGACCTGAGAAAGAAACTCCTGTACGAGTGTCACGACACACTCTTGGCGGGCCACCCGGGGTGGCAGAGGACATACGCCCTACTGAAAAAGGGCTATTTTTGGCCCAATATGAGAGACGACGTCATGCAGTATACGAAGACATGTCTTATCTGCCAGCAAGACAAAGTTGAGAAAGTACAGATTGCGGGTCTCCTTGAACCTTTGCCGGTACCAACACGACCTTGGGAGAGTGTGTCCATGGACTTCATCACTCACCTTCCAAAGGTGGGCGACATTGAGGCCATCTTGGTCATCATCGACCAGTTCTCAAAATATGCCACCTTCATCTCCACGACGAAGTTGTGTTCTGCCGAGATGACGGCACAGTTGTTTTTCAGGCACGTTGTGAAATTGTGGGGTGTGCCCACGAGTATTGTGAGCGACAGGGATGGTAGATTCATCGGCACCTTCTGGACAGAGTTGTTCGCCTTCTTGGGGACAAATTTGAATGTGTCCTCGAGTTACCATCCCCAAACCGACGGTCAAACGGAGCGATTCAATTGCATGCTCGAGGAGTATCTACGCCATTTGTGGATGCAAGACAGAAGAATTGGGTCCAGTTACTAGATGTGGCCCAATTCTGCTTCAACGCTCAGACGAGCTCGTCGACAGGGAAGAGTCCCTTCGAGATTGTGTGTGGCCGACAGCCTGTGTTACCACACCTAGTGGATCACCCCTATGCAGGGAAGAATCCACAAGCTCACAGCTTCACAAGGGAATGGAAACAGACAACCGACATCGCTCGAGCTTGCCTAGAGAAGGCCTCTAAACGAATGAAGAAATGGGCAGATAAGAAACGTCGTCCCCTCGAGTTTCGGGCGGGAGACCAAGTCCTCATCAAGCTGCGACCGGAACAGATCAGATTTCGAGGACGCAAAGACCAACGCCTCGTGAGAAAATACGAGGGCCCTGTGGAAGTCCTCAGAAAGGTGGGAAACACATCCTACCGAGTGACGTTACCCACGTGGATGAAAATACACCCAGTAATTTACGTGAGTAACCTGAAGCCATACCATCAGGACCCCGATGCTGGGCAACGCAATGTTGCCATCCGACCGAACATCAATCTGAACCCAGGGGAAGAAGACAGAGATGTTGAGGAAATCCTTGCCGATCGGGTAAGGAAGGGTAGAAGACCCACGAGGAGAATCCATGAATTCCTGGTCAAGTGGAAGAACCTCCCCGTGGAAGAGACCAGTTGGGAACGTGTCGAAGACCTGGAAGCTTGGAAGCAGAAGATTGAAGAGTTCCAACTCCGCCAGTCGACAGGGACGTCAACTGTTTAAGTGGGGGAGAATGTCACAACCATGCTTGTCCAAGGCGTTGTTTGCCCATGGCCGCATGCTTGGACATCTCCACACCGCCTTACCTTATGCTTTCATTTACTTTTCATGTCGCTTTGCTTTTACTTTCATTGTCGCTTTATGCTTTCCTTTACTTTCCATGTCGCTTTGCTTTTACTTTCTATGTCGGCTAGTGACATTTCGCACATTTTGGTATGCAAGCCTGGCAGATCATAAAATGTGCAAAATGTACTATAGGGGAGTAGTATCAGTCACATCCCCGACTAAGCCTTGTCGCACTCTTTGCAATCTAAGCCTTCTTTGCAATTGACAGTCTTCAAAGCTTTCTTTAACGATGAATTCAATAATCTGTTTTCTCTCTCACGTTTTATAAAATATTTTCTCTCAAAACGTGGAGGGAGGCTTCATCGTTCCGCGAGTTTATCCGCGGGTTTCGGATTACGAACGGCTGACTTGTTCATCGAGCTAGAACAAGTGCCGCACAATCGCTTGCCTCGCCCTTGAAAGGCTACGATTGTGACACACAGCGCCGTAGATCTACCTCACGTGCCGTCGCTGCCAGGCGCGTGGGCCCACGAGCCGCCGCCTATTCGTCTCACCGCCCAGATCAATGGATTCCTCATGTCGCCGCCTGTCCAACCGTCTTACCCTTCTGCCCATCCGCACGCTCACGCGCCGCCGCTGCCCTCCGGTCATGGACATCCGCCAATTCCGACTACCCAGCCGCCGCTGTCTGTTAATCCTTCACAGCAACCTTATTTCCATGGTACCGGAGTTGACCAAAATTACAACAGACTTAGGTTTGAAGTCGGCGAAACCTCGGCCCAATCCAAAAACCCGGTAACATCATTCCCTACTCGAACATCAAATTTTATAATTGGTTCTATGGTTCCCTCCACAAGTAACTTTCCAGGAGAAAAACTGAATGGGCAAAATTTTTTCTCTTAGTCTCAATCGATCAAGATGTTTCTTGAGGGACGCCAACAATTTGGGTTTCTGGCTGGTGAGATTCCCCGTCCTCCACCTGGTGATGATCAAGAACGCCTCTGGAGAGCAGAGGATTCCTTTATTCGATCCATGTTGATCAACAGTATGGAGTCTCAGATAGGCAAGCCCCTCATGTATGCTGCTACTGCAAAGGATTTTGGGACTCCACTCAGAAACTTTACTCGAAACGTCAAAATGTTTCCCGTTTGCATACCTTGA

mRNA sequence

ATGTCTACAGCGAAACAGATGGGCAAGGCCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGATGGAAATTCCGGACACTGTCCGCTTCCTGGAAGGACGAATCGAGGAAGTGTCCGAGAAAGCTGATGCTATTGATGCGGTGACCGGTCGCCTCGACGGTTTACCCATAAAGGAGTTGTTAACAAGAGTTGACACCTTAGAGGCAAAGACTACCAGAATAAACTACGAACAGCGACTGTTTGACCTGTCCAGTGAGTCTCAAGATATGAGACGTCCCTCAAGTTCCTCATCTGGAGGAAACAAGAACAACCGTGCAAGTTCTCCAAAGGCCGGAGGCGGAGATAGGCGATCTAGTGGTGATCGCAGGCCCTTCCAATCGAATACTGGAAACACGGGGCGAGGACAGAACCCCCAAAATTCTCAGAATCGCCCCCTTGCCTGTTTCATATGTAAGGGGCCACATCTGGCGAGAGAATGCCCGAACCGAACTGCCTTCAACGCCTTTCAGGCTACCTTAACCTCAGACTCAGATGACAAGAATGGTCAAACAGAGGGAGAGGATGCCCAGGTAGAAGAAAGCGATAACCCCAGGATAGGAGCCCTGAAGCTTCTATCAGCCCTTCAGAGGAAAGGAGGAGAGGCAAATGAACCGGCTACGATTGTGACACACAGCGCCGTAGATCTACCTCACGTGCCGTCGCTGCCAGGCGCGTGGGCCCACGAGCCGCCGCCTATTCGTCTCACCGCCCAGATCAATGGATTCCTCATGTCGCCGCCTGTCCAACCGTCTTACCCTTCTGCCCATCCGCACGCTCACGCGCCGCCGCTGCCCTCCGGTCATGGACATCCGCCAATTCCGACTACCCAGCCGCCGCTGTCTGTTAATCCTTCACAGCAACCTTATTTCCATGGTACCGGAGTTGACCAAAATTACAACAGACTTAGGTTTGAAGTCGGCGAAACCTCGGCCCAATCCAAAAACCCGTCTCAATCGATCAAGATGTTTCTTGAGGGACGCCAACAATTTGGGTTTCTGGCTGGTGAGATTCCCCGTCCTCCACCTGGTGATGATCAAGAACGCCTCTGGAGAGCAGAGGATTCCTTTATTCGATCCATGTTGATCAACAGTATGGAGTCTCAGATAGGCAAGCCCCTCATGTATGCTGCTACTGCAAAGGATTTTGGGACTCCACTCAGAAACTTTACTCGAAACGTCAAAATGTTTCCCGTTTGCATACCTTGA

Coding sequence (CDS)

ATGTCTACAGCGAAACAGATGGGCAAGGCCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGATGGAAATTCCGGACACTGTCCGCTTCCTGGAAGGACGAATCGAGGAAGTGTCCGAGAAAGCTGATGCTATTGATGCGGTGACCGGTCGCCTCGACGGTTTACCCATAAAGGAGTTGTTAACAAGAGTTGACACCTTAGAGGCAAAGACTACCAGAATAAACTACGAACAGCGACTGTTTGACCTGTCCAGTGAGTCTCAAGATATGAGACGTCCCTCAAGTTCCTCATCTGGAGGAAACAAGAACAACCGTGCAAGTTCTCCAAAGGCCGGAGGCGGAGATAGGCGATCTAGTGGTGATCGCAGGCCCTTCCAATCGAATACTGGAAACACGGGGCGAGGACAGAACCCCCAAAATTCTCAGAATCGCCCCCTTGCCTGTTTCATATGTAAGGGGCCACATCTGGCGAGAGAATGCCCGAACCGAACTGCCTTCAACGCCTTTCAGGCTACCTTAACCTCAGACTCAGATGACAAGAATGGTCAAACAGAGGGAGAGGATGCCCAGGTAGAAGAAAGCGATAACCCCAGGATAGGAGCCCTGAAGCTTCTATCAGCCCTTCAGAGGAAAGGAGGAGAGGCAAATGAACCGGCTACGATTGTGACACACAGCGCCGTAGATCTACCTCACGTGCCGTCGCTGCCAGGCGCGTGGGCCCACGAGCCGCCGCCTATTCGTCTCACCGCCCAGATCAATGGATTCCTCATGTCGCCGCCTGTCCAACCGTCTTACCCTTCTGCCCATCCGCACGCTCACGCGCCGCCGCTGCCCTCCGGTCATGGACATCCGCCAATTCCGACTACCCAGCCGCCGCTGTCTGTTAATCCTTCACAGCAACCTTATTTCCATGGTACCGGAGTTGACCAAAATTACAACAGACTTAGGTTTGAAGTCGGCGAAACCTCGGCCCAATCCAAAAACCCGTCTCAATCGATCAAGATGTTTCTTGAGGGACGCCAACAATTTGGGTTTCTGGCTGGTGAGATTCCCCGTCCTCCACCTGGTGATGATCAAGAACGCCTCTGGAGAGCAGAGGATTCCTTTATTCGATCCATGTTGATCAACAGTATGGAGTCTCAGATAGGCAAGCCCCTCATGTATGCTGCTACTGCAAAGGATTTTGGGACTCCACTCAGAAACTTTACTCGAAACGTCAAAATGTTTCCCGTTTGCATACCTTGA

Protein sequence

MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLPIKELLTRVDTLEAKTTRINYEQRLFDLSSESQDMRRPSSSSSGGNKNNRASSPKAGGGDRRSSGDRRPFQSNTGNTGRGQNPQNSQNRPLACFICKGPHLARECPNRTAFNAFQATLTSDSDDKNGQTEGEDAQVEESDNPRIGALKLLSALQRKGGEANEPATIVTHSAVDLPHVPSLPGAWAHEPPPIRLTAQINGFLMSPPVQPSYPSAHPHAHAPPLPSGHGHPPIPTTQPPLSVNPSQQPYFHGTGVDQNYNRLRFEVGETSAQSKNPSQSIKMFLEGRQQFGFLAGEIPRPPPGDDQERLWRAEDSFIRSMLINSMESQIGKPLMYAATAKDFGTPLRNFTRNVKMFPVCIP

Homology

[Close]

BLAST of PI0010293 vs. ExPASy TrEMBL
Match: A0A5D3B9T5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00320 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.1e-51
Identity = 143/368 (38.86%), Postives = 177/368 (48.10%), Query Frame = 0


Query: 1   MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
           MS++   GKA  DRLVE+EEQMLYL+E+P+++R+LE R++E+SEK + IDAV GR++G  
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPNSIRYLESRLDEISEKTNTIDAVAGRVEGFL 60

Query: 61  IKELLTRVDTLEAKTT---RINYE------------------------------------ 120
           I+EL+TRVD LE        +NYE                                    
Sbjct: 61  IQELMTRVDALETTINIRRTVNYERGDSSTGSVAHIEERVQELDSSQKALLEMINGMSED 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPKPKPFCGARDAKALEN 180

Query: 181 -----------------------------------------------QRLFDLSSESQDM 223
                                                          +RLFDLS++SQD 
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDMQKGPERLFDLSNDSQDT 240

[Close]

BLAST of PI0010293 vs. ExPASy TrEMBL
Match: A0A5D3DEJ3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00860 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 8.5e-49
Identity = 141/381 (37.01%), Postives = 176/381 (46.19%), Query Frame = 0


Query: 1   MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
           MS+    GKA  DRLVE+EEQMLYL+E+ D++R+LE  ++E+SEK + IDAV GR++G P
Sbjct: 1   MSSLNPSGKAQKDRLVELEEQMLYLVEVLDSIRYLESHLDEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLEAKTT---RINYE------------------------------------ 120
           I+EL+TRVD LE        +NYE                                    
Sbjct: 61  IQELMTRVDALETTINIGRTVNYERGDSSTSSVAHIEERVQELDSSQKTLLEMINSMSED 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FRATLNVVRNEIADVNARLSLTIREGLENYIFDLEQYFKATNTVTEEAKVTLAMMHLSED 180

Query: 181 ------------------------------------------------------------ 223
                                                                       
Sbjct: 181 AKLWWSIREYVKQFAGLMLDIRDMSEKDKVFCFVKGLKPWAKTKLYEQRVQDLTSAYAAA 240

[Close]

BLAST of PI0010293 vs. ExPASy TrEMBL
Match: A0A5A7UYM0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G001390 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 8.5e-49
Identity = 141/381 (37.01%), Postives = 176/381 (46.19%), Query Frame = 0


Query: 1   MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
           MS+    GKA  DRLVE+EEQMLYL+E+ D++R+LE  ++E+SEK + IDAV GR++G P
Sbjct: 1   MSSLNPSGKAQKDRLVELEEQMLYLVEVLDSIRYLESHLDEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLEAKTT---RINYE------------------------------------ 120
           I+EL+TRVD LE        +NYE                                    
Sbjct: 61  IQELMTRVDALETTINIGRTVNYERGDSSTSSVAHIEERVQELDSSQKTLLEMINSMSED 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FRATLNVVRNEIADVNARLSLTIREGLENYIFDLEQYFKATNTVTEEAKVTLAMMHLSED 180

Query: 181 ------------------------------------------------------------ 223
                                                                       
Sbjct: 181 AKLWWSIREYVKQFAGLMLDIRDMSEKDKVFCFVKGLKPWAKTKLYEQRVQDLTSAYAAA 240

[Close]

BLAST of PI0010293 vs. ExPASy TrEMBL
Match: A0A5A7SQC7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43053G00490 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-48
Identity = 148/433 (34.18%), Postives = 182/433 (42.03%), Query Frame = 0


Query: 1   MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
           MS++   GKA  DRL+E+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLIELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLEAKTT---RINYE------------------------------------ 120
           I+EL+TRVD LE        +NYE                                    
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 ------------------------------------------------------------ 223
                                                                       
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

[Close]

BLAST of PI0010293 vs. ExPASy TrEMBL
Match: A0A5A7SUK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00100 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 6.1e-47
Identity = 151/460 (32.83%), Postives = 183/460 (39.78%), Query Frame = 0


Query: 1   MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
           MS++   GKA  DRLVE+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLEAKTT---RINYE------------------------------------ 120
           I+EL+TRVD LE        +NYE                                    
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 ------------------------------------------------------------ 223
                                                                       
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQKGRCTIDTWDALKREL 240

[Close]

BLAST of PI0010293 vs. NCBI nr
Match: KAA0063458.1 (uncharacterized protein E6C27_scaffold977G00440 [Cucumis melo var. makuwa] >TYJ95769.1 uncharacterized protein E5676_scaffold110G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 214.2 bits (544), Expect = 2.2e-51
Identity = 143/368 (38.86%), Postives = 177/368 (48.10%), Query Frame = 0


Query: 1   MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
           MS++   GKA  DRLVE+EEQMLYL+E+P+++R+LE R++E+SEK + IDAV GR++G  
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPNSIRYLESRLDEISEKTNTIDAVAGRVEGFL 60

Query: 61  IKELLTRVDTLEAKTT---RINYE------------------------------------ 120
           I+EL+TRVD LE        +NYE                                    
Sbjct: 61  IQELMTRVDALETTINIRRTVNYERGDSSTGSVAHIEERVQELDSSQKALLEMINGMSED 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPKPKPFCGARDAKALEN 180

Query: 181 -----------------------------------------------QRLFDLSSESQDM 223
                                                          +RLFDLS++SQD 
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDMQKGPERLFDLSNDSQDT 240

[Close]

BLAST of PI0010293 vs. NCBI nr
Match: KAA0060348.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 1.8e-48
Identity = 141/381 (37.01%), Postives = 176/381 (46.19%), Query Frame = 0


Query: 1   MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
           MS+    GKA  DRLVE+EEQMLYL+E+ D++R+LE  ++E+SEK + IDAV GR++G P
Sbjct: 1   MSSLNPSGKAQKDRLVELEEQMLYLVEVLDSIRYLESHLDEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLEAKTT---RINYE------------------------------------ 120
           I+EL+TRVD LE        +NYE                                    
Sbjct: 61  IQELMTRVDALETTINIGRTVNYERGDSSTSSVAHIEERVQELDSSQKTLLEMINSMSED 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FRATLNVVRNEIADVNARLSLTIREGLENYIFDLEQYFKATNTVTEEAKVTLAMMHLSED 180

Query: 181 ------------------------------------------------------------ 223
                                                                       
Sbjct: 181 AKLWWSIREYVKQFAGLMLDIRDMSEKDKVFCFVKGLKPWAKTKLYEQRVQDLTSAYAAA 240

[Close]

BLAST of PI0010293 vs. NCBI nr
Match: TYK22097.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 204.5 bits (519), Expect = 1.8e-48
Identity = 141/381 (37.01%), Postives = 176/381 (46.19%), Query Frame = 0


Query: 1   MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
           MS+    GKA  DRLVE+EEQMLYL+E+ D++R+LE  ++E+SEK + IDAV GR++G P
Sbjct: 1   MSSLNPSGKAQKDRLVELEEQMLYLVEVLDSIRYLESHLDEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLEAKTT---RINYE------------------------------------ 120
           I+EL+TRVD LE        +NYE                                    
Sbjct: 61  IQELMTRVDALETTINIGRTVNYERGDSSTSSVAHIEERVQELDSSQKTLLEMINSMSED 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FRATLNVVRNEIADVNARLSLTIREGLENYIFDLEQYFKATNTVTEEAKVTLAMMHLSED 180

Query: 181 ------------------------------------------------------------ 223
                                                                       
Sbjct: 181 AKLWWSIREYVKQFAGLMLDIRDMSEKDKVFCFVKGLKPWAKTKLYEQRVQDLTSAYAAA 240

[Close]

BLAST of PI0010293 vs. NCBI nr
Match: KAA0032583.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 2.3e-48
Identity = 148/433 (34.18%), Postives = 182/433 (42.03%), Query Frame = 0


Query: 1   MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
           MS++   GKA  DRL+E+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLIELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLEAKTT---RINYE------------------------------------ 120
           I+EL+TRVD LE        +NYE                                    
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 ------------------------------------------------------------ 223
                                                                       
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQEGRCTIDTWDALKREL 240

[Close]

BLAST of PI0010293 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 198.4 bits (503), Expect = 1.3e-46
Identity = 151/460 (32.83%), Postives = 183/460 (39.78%), Query Frame = 0


Query: 1   MSTAKQMGKAHADRLVEIEEQMLYLMEIPDTVRFLEGRIEEVSEKADAIDAVTGRLDGLP 60
           MS++   GKA  DRLVE+EEQMLYL+E+PD++R+LE R+EE+SEK + IDAV GR++G P
Sbjct: 1   MSSSNPSGKAQKDRLVELEEQMLYLVEVPDSIRYLESRLEEISEKTNTIDAVAGRVEGFP 60

Query: 61  IKELLTRVDTLEAKTT---RINYE------------------------------------ 120
           I+EL+TRVD LE        +NYE                                    
Sbjct: 61  IQELMTRVDALETTVNIGRTVNYERGDSSTGSVAHIEERVQELDSSQKTLLEMINGMSED 120

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 121 FRATLDVVRNEIADVNARLSLTMRAMANQAPAGGAIPVSRVKIPEPKPFCGARDAKALEN 180

Query: 181 ------------------------------------------------------------ 223
                                                                       
Sbjct: 181 YIFDLEQYFRATNTVTEEAKVTLATMHLSEDAKLWWRSRFVDIQKGRCTIDTWDALKREL 240

[Close]

BLAST of PI0010293 vs. TAIR 10
Match: AT1G21280.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 2.2e-04
Identity = 21/67 (31.34%), Postives = 36/67 (53.73%), Query Frame = 0


Query: 338 KMFLEGRQQFGFLAGEIPRPPPGDDQERLWRAEDSFIRSMLINSMESQIGKPLMYAATAK 397
           + FL   ++FGF+ G +P+P P     + W   ++ +   L+NSM  ++ + +MYA TA 
Sbjct: 50  RSFLRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAH 109

Query: 398 DFGTPLR 405
                LR
Sbjct: 110 KMWEDLR 116

The following BLAST results are available for this feature:

BLAST of PI0010293 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010293 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B9T5	1.1e-51	38.86	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DEJ3	8.5e-49	37.01	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31...	[more]
A0A5A7UYM0	8.5e-49	37.01	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]
A0A5A7SQC7	1.1e-48	34.18	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43...	[more]
A0A5A7SUK4	6.1e-47	32.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81...	[more]

BLAST of PI0010293 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063458.1	2.2e-51	38.86	uncharacterized protein E6C27_scaffold977G00440 [Cucumis melo var. makuwa] >TYJ9...	[more]
KAA0060348.1	1.8e-48	37.01	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK22097.1	1.8e-48	37.01	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032583.1	2.3e-48	34.18	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032849.1	1.3e-46	32.83	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of PI0010293 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G21280.1	2.2e-04	31.34	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Ha...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..297
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 267..297

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010293.1	PI0010293.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0003824	catalytic activity