PI0010218 (gene) Melon (PI 482460) v1

Overview


Name	PI0010218
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Zinc finger BED domain-containing protein RICESLEEPER 2-like
Location	chr02: 6863616 .. 6864369 (-)
RNA-Seq Expression	PI0010218
Synteny	PI0010218

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTAAAGTTCTTGTTGAGGGGATTGAAGCTCATTTGCGTTTGTATAATTGTTACAAATCACAAGTTGATGGCTTTCATAATGATTTTAGTGGTCAAAGTGTTGTTTGTGAACAAGTAGAATCAAGTGATAGTTTGAGACTATTGAGTTCGAAAACTACGTGTAACGTCCAAGGAGATAAGGTAATTCTCTTTTTTTTCCTTTTTCTCTTCTCCTTTTTTTTAGCATCATTAATTTTGGTTATTAAATTGAAGAAAGAGGAAGTTTTAATTTTAGAATTAAAGGGGGGAAAGGAAAGGTTTTTTTTTCCTTTTTAATAAAATTTATGGTTACTAATAACCCCTTTAATAATTCATTAAATAGGGTCTCGATATCCATGCACTTCATCTTATCCCTTCCTTCTTTCCACACAAACCCTAGCTGCCACCCTTTACCGCCGTCCAACGTGTCTCGTCGGACGTTTCTCGTAGGCGAAGCCAAACCGAGGAAGAAGCGTCCGATCCTTACCGTCCCGAGCTGAGGAGTCCTCGCGAAGCTGAGTTGCACCGCGCCGCGCTGTTTGCCTCCTTCTTGCGAAGCCGCGCAGATCTGCCTCTTCCACGCGAAGCGAGTCGTGTCGATCTGCCTCCTCCACGTGAAGCCACGCTGCCATCTGCCTTCCTTTCGCGAAGCCGAGCCGCCTGTCGTCCAAGTCGAGCCACGCTGCCTGTCGAGCCACCGCGTGCTACCTTTTCTCTCAGTGTGACCCAGTAG

mRNA sequence

ATGGTTAAAGTTCTTGTTGAGGGGATTGAAGCTCATTTGCGTTTGTATAATTGTTACAAATCACAAGTTGATGGCTTTCATAATGATTTTAGTGGTCAAAGTGTTGTTTGTGAACAAGTAGAATCAAGTGATAGTTTGAGACTATTGAGTTCGAAAACTACGTGTAACGTCCAAGGAGATAAGCTGCCACCCTTTACCGCCGTCCAACGTGTCTCGTCGGACGTTTCTCGTAGGCGAAGCCAAACCGAGGAAGAAGCGTCCGATCCTTACCGTCCCGAGCTGAGGAGTCCTCGCGAAGCTGAGTTGCACCGCGCCGCGCTGTTTGCCTCCTTCTTGCGAAGCCGCGCAGATCTGCCTCTTCCACGCGAAGCGAGTCGTGTCGATCTGCCTCCTCCACGTGAAGCCACGCTGCCATCTGCCTTCCTTTCGCGAAGCCGAGCCGCCTGTCGTCCAAGTCGAGCCACGCTGCCTGTCGAGCCACCGCGTGCTACCTTTTCTCTCAGTGTGACCCAGTAG

Coding sequence (CDS)

ATGGTTAAAGTTCTTGTTGAGGGGATTGAAGCTCATTTGCGTTTGTATAATTGTTACAAATCACAAGTTGATGGCTTTCATAATGATTTTAGTGGTCAAAGTGTTGTTTGTGAACAAGTAGAATCAAGTGATAGTTTGAGACTATTGAGTTCGAAAACTACGTGTAACGTCCAAGGAGATAAGCTGCCACCCTTTACCGCCGTCCAACGTGTCTCGTCGGACGTTTCTCGTAGGCGAAGCCAAACCGAGGAAGAAGCGTCCGATCCTTACCGTCCCGAGCTGAGGAGTCCTCGCGAAGCTGAGTTGCACCGCGCCGCGCTGTTTGCCTCCTTCTTGCGAAGCCGCGCAGATCTGCCTCTTCCACGCGAAGCGAGTCGTGTCGATCTGCCTCCTCCACGTGAAGCCACGCTGCCATCTGCCTTCCTTTCGCGAAGCCGAGCCGCCTGTCGTCCAAGTCGAGCCACGCTGCCTGTCGAGCCACCGCGTGCTACCTTTTCTCTCAGTGTGACCCAGTAG

Protein sequence

MVKVLVEGIEAHLRLYNCYKSQVDGFHNDFSGQSVVCEQVESSDSLRLLSSKTTCNVQGDKLPPFTAVQRVSSDVSRRRSQTEEEASDPYRPELRSPREAELHRAALFASFLRSRADLPLPREASRVDLPPPREATLPSAFLSRSRAACRPSRATLPVEPPRATFSLSVTQ

Homology

[Close]

BLAST of PI0010218 vs. ExPASy TrEMBL
Match: A0A5A7TEA9 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00700 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.1e-14
Identity = 55/84 (65.48%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1   MVKVLVEGIEAHL-RLYNCYKSQVDG--FHNDFSGQSVVCEQVESSDSLRLLSSKTTCNV 60
           MVKVLV+ IEA+L RLYNCYKSQVDG  F ND SGQ VVCEQVESSDSLRLLSS TT   
Sbjct: 178 MVKVLVDEIEAYLMRLYNCYKSQVDGFAFRNDLSGQDVVCEQVESSDSLRLLSSGTTVET 237

Query: 61  QGDKLPPFTAVQRVSSDVSRRRSQ 82
                    A  RVSS   RRR +
Sbjct: 238 --------NASCRVSSRYKRRRQE 253

[Close]

BLAST of PI0010218 vs. ExPASy TrEMBL
Match: A0A5A7V549 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G001490 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 50/83 (60.24%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 2   VKVLVEGIEAHL-RLYNCYKSQVDG--FHNDFSGQSVVCEQVESSDSLRLLSSKTTCNVQ 61
           VKVLV+GI+A+L  LYNCYKSQ+DG  F ND SGQ+VVCEQVESSDSL++LSS TT    
Sbjct: 155 VKVLVDGIQAYLMHLYNCYKSQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMETD 214

Query: 62  GDKLPPFTAVQRVSSDVSRRRSQ 82
                   A  RV S   RRR Q
Sbjct: 215 --------ASCRVLSRYKRRRQQ 229

[Close]

BLAST of PI0010218 vs. ExPASy TrEMBL
Match: A0A5A7UUF4 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold803G00040 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 4.4e-12
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 2   VKVLVEGIEAHL-RLYNCYKSQVDG--FHNDFSGQSVVCEQVESSDSLRLLSSKTTCNVQ 61
           VKVLV+GI+A+L RLYNCYK+Q+DG  F ND SGQ+VVCEQVESSDSL++LSS TT    
Sbjct: 51  VKVLVDGIQAYLMRLYNCYKTQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMETD 110

Query: 62  GDKLPPFTAVQRVSSDVSRRRSQ 82
                   A  RV S   RRR +
Sbjct: 111 --------ASCRVLSRYKRRRQE 125

[Close]

BLAST of PI0010218 vs. ExPASy TrEMBL
Match: A0A5A7SQX7 (Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold269G00240 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 5.8e-12
Identity = 50/83 (60.24%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 2  VKVLVEGIEAHL-RLYNCYKSQVDG--FHNDFSGQSVVCEQVESSDSLRLLSSKTTCNVQ 61
          VKVLV+GI+A+L RLYNCYKSQ+DG  F ND SGQ VVCEQVESSDSL++LSS TT    
Sbjct: 15 VKVLVDGIQAYLMRLYNCYKSQIDGFAFRNDLSGQVVVCEQVESSDSLKVLSSGTTMETD 74

Query: 62 GDKLPPFTAVQRVSSDVSRRRSQ 82
                  A  RV S   RRR +
Sbjct: 75 --------ANCRVLSRYKRRRQE 89

[Close]

BLAST of PI0010218 vs. ExPASy TrEMBL
Match: A0A5D3BRU1 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001720 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.6e-12
Identity = 49/83 (59.04%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 2   VKVLVEGIEAHL-RLYNCYKSQVDG--FHNDFSGQSVVCEQVESSDSLRLLSSKTTCNVQ 61
           VKVLV+GI+A+L RLYNCYKSQ+DG  F ND SGQ+VVCEQVESSDSL++LS  TT    
Sbjct: 491 VKVLVDGIQAYLMRLYNCYKSQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSPGTTTETD 550

Query: 62  GDKLPPFTAVQRVSSDVSRRRSQ 82
                   A  RV S   RRR +
Sbjct: 551 --------ASCRVLSRYKRRRQE 565

[Close]

BLAST of PI0010218 vs. NCBI nr
Match: KAA0039559.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa] >TYK01741.1 zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-13
Identity = 55/84 (65.48%), Postives = 58/84 (69.05%), Query Frame = 0


Query: 1   MVKVLVEGIEAHL-RLYNCYKSQVDG--FHNDFSGQSVVCEQVESSDSLRLLSSKTTCNV 60
           MVKVLV+ IEA+L RLYNCYKSQVDG  F ND SGQ VVCEQVESSDSLRLLSS TT   
Sbjct: 178 MVKVLVDEIEAYLMRLYNCYKSQVDGFAFRNDLSGQDVVCEQVESSDSLRLLSSGTTVET 237

Query: 61  QGDKLPPFTAVQRVSSDVSRRRSQ 82
                    A  RVSS   RRR +
Sbjct: 238 --------NASCRVSSRYKRRRQE 253

[Close]

BLAST of PI0010218 vs. NCBI nr
Match: KAA0062374.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 7.0e-12
Identity = 50/83 (60.24%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 2   VKVLVEGIEAHL-RLYNCYKSQVDG--FHNDFSGQSVVCEQVESSDSLRLLSSKTTCNVQ 61
           VKVLV+GI+A+L  LYNCYKSQ+DG  F ND SGQ+VVCEQVESSDSL++LSS TT    
Sbjct: 155 VKVLVDGIQAYLMHLYNCYKSQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMETD 214

Query: 62  GDKLPPFTAVQRVSSDVSRRRSQ 82
                   A  RV S   RRR Q
Sbjct: 215 --------ASCRVLSRYKRRRQQ 229

[Close]

BLAST of PI0010218 vs. NCBI nr
Match: KAA0058814.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 81.3 bits (199), Expect = 9.2e-12
Identity = 49/83 (59.04%), Postives = 58/83 (69.88%), Query Frame = 0


Query: 2   VKVLVEGIEAHL-RLYNCYKSQVDG--FHNDFSGQSVVCEQVESSDSLRLLSSKTTCNVQ 61
           VKVLV+GI+A+L RLYNCYK+Q+DG  F ND SGQ+VVCEQVESSDSL++LSS TT    
Sbjct: 51  VKVLVDGIQAYLMRLYNCYKTQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSSGTTMETD 110

Query: 62  GDKLPPFTAVQRVSSDVSRRRSQ 82
                   A  RV S   RRR +
Sbjct: 111 --------ASCRVLSRYKRRRQE 125

[Close]

BLAST of PI0010218 vs. NCBI nr
Match: KAA0032948.1 (zinc finger BED domain-containing protein RICESLEEPER 2 [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-11
Identity = 50/83 (60.24%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 2  VKVLVEGIEAHL-RLYNCYKSQVDG--FHNDFSGQSVVCEQVESSDSLRLLSSKTTCNVQ 61
          VKVLV+GI+A+L RLYNCYKSQ+DG  F ND SGQ VVCEQVESSDSL++LSS TT    
Sbjct: 15 VKVLVDGIQAYLMRLYNCYKSQIDGFAFRNDLSGQVVVCEQVESSDSLKVLSSGTTMETD 74

Query: 62 GDKLPPFTAVQRVSSDVSRRRSQ 82
                  A  RV S   RRR +
Sbjct: 75 --------ANCRVLSRYKRRRQE 89

[Close]

BLAST of PI0010218 vs. NCBI nr
Match: TYK01905.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 1.6e-11
Identity = 49/83 (59.04%), Postives = 57/83 (68.67%), Query Frame = 0


Query: 2   VKVLVEGIEAHL-RLYNCYKSQVDG--FHNDFSGQSVVCEQVESSDSLRLLSSKTTCNVQ 61
           VKVLV+GI+A+L RLYNCYKSQ+DG  F ND SGQ+VVCEQVESSDSL++LS  TT    
Sbjct: 491 VKVLVDGIQAYLMRLYNCYKSQIDGFAFRNDLSGQAVVCEQVESSDSLKVLSPGTTTETD 550

Query: 62  GDKLPPFTAVQRVSSDVSRRRSQ 82
                   A  RV S   RRR +
Sbjct: 551 --------ASCRVLSRYKRRRQE 565

The following BLAST results are available for this feature:

BLAST of PI0010218 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010218 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TEA9	8.1e-14	65.48	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7V549	3.4e-12	60.24	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]
A0A5A7UUF4	4.4e-12	59.04	Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var...	[more]
A0A5A7SQX7	5.8e-12	60.24	Zinc finger BED domain-containing protein RICESLEEPER 2 OS=Cucumis melo var. mak...	[more]
A0A5D3BRU1	7.6e-12	59.04	Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var...	[more]

BLAST of PI0010218 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039559.1	1.7e-13	65.48	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0062374.1	7.0e-12	60.24	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]
KAA0058814.1	9.2e-12	59.04	zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ...	[more]
KAA0032948.1	1.2e-11	60.24	zinc finger BED domain-containing protein RICESLEEPER 2 [Cucumis melo var. makuw...	[more]
TYK01905.1	1.6e-11	59.04	zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ...	[more]

BLAST of PI0010218 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..171

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0010218.1	PI0010218.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0005488	binding