PI0010117 (gene) Melon (PI 482460) v1

Overview
NamePI0010117
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionPMD domain-containing protein
Locationchr04: 25392782 .. 25393567 (+)
RNA-Seq ExpressionPI0010117
SyntenyPI0010117
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCCTATCCACGAGAGGGAAGTCAAGGAGCACAGAGAGAAGAGTGATAGCAGCAGAAGCAATCGTCATTGGAAGAGACCTTCGAAGAAGCAAAGGCATCAGGAGATGATTCCTGTGGAGGAGGTTCAAGTGCTATGGAAATTCCTAATGTTCCAACACCATTGGTTCGCATATTTTCTTCCCTTAATTAATTTTTTTTATTTTATTTTAATTTTTTTCATGGCTAATTTATTTATTACTTATTTCTGCAGTCATCTTCAAGGACTTGTAGAGATATGTAGTGATGACTTTCTAGCAAAGCCTCATGTCGTTGATTCAGCCCTTGAAGAAGTTGGTACCTTAAAGACACCAGTTGCTAGACCAACTGAACAATCCTCACATCCTCCTACTCTTCTCGAGGAGATTTGTCGAGGCAAGATGAAGGTGAATGAAAAAGATATTGAAAATTCAAATCCTCTGTCCAAAGGCCCCAAAGCGTCTTTAGAGAAGGTTAAATCCACGCATGCGCCTCTCAAGATTTCCGAGCAGCCTTTAGACACTTCTAGAAAGCAGATAGCAGGACATCCTGAGCCTTCTTAATGGGTTGATGAAAAGGTAGTGTTAAACTTCTTTTAGAAAACGACCTTATGCATGTGGGAGAACATTCAAGACAAGATCATGCGCACTCCTTTTGAATATATCCTAAGACTTAGACCAGAAATAGCAACGGTTCTTTCGGGAATTGCAAAGATCCATGTAAACAACCTGACTCCTCTTGAAGAATATTTGAATAGCTACCTTTAG

mRNA sequence

ATGGCTCCTATCCACGAGAGGGAAGTCAAGGAGCACAGAGAGAAGAGTGATAGCAGCAGAAGCAATCGTCATTGGAAGAGACCTTCGAAGAAGCAAAGGCATCAGGAGATGATTCCTACACCAGTTGCTAGACCAACTGAACAATCCTCACATCCTCCTACTCTTCTCGAGGAGATTTGTCGAGGCAAGATGAAGGTGAATGAAAAAGATATTGAAAATTCAAATCCTCTGTCCAAAGGCCCCAAAGCGTCTTTAGAGAAGGTTAAATCCACGCATGCGCCTCTCAAGATTTCCGAGCAGCCTTTAGACACTTCTAGAAAGCAGATAGCAGGACATCCTGAACTTAGACCAGAAATAGCAACGGTTCTTTCGGGAATTGCAAAGATCCATGTAAACAACCTGACTCCTCTTGAAGAATATTTGAATAGCTACCTTTAG

Coding sequence (CDS)

ATGGCTCCTATCCACGAGAGGGAAGTCAAGGAGCACAGAGAGAAGAGTGATAGCAGCAGAAGCAATCGTCATTGGAAGAGACCTTCGAAGAAGCAAAGGCATCAGGAGATGATTCCTACACCAGTTGCTAGACCAACTGAACAATCCTCACATCCTCCTACTCTTCTCGAGGAGATTTGTCGAGGCAAGATGAAGGTGAATGAAAAAGATATTGAAAATTCAAATCCTCTGTCCAAAGGCCCCAAAGCGTCTTTAGAGAAGGTTAAATCCACGCATGCGCCTCTCAAGATTTCCGAGCAGCCTTTAGACACTTCTAGAAAGCAGATAGCAGGACATCCTGAACTTAGACCAGAAATAGCAACGGTTCTTTCGGGAATTGCAAAGATCCATGTAAACAACCTGACTCCTCTTGAAGAATATTTGAATAGCTACCTTTAG

Protein sequence

MAPIHEREVKEHREKSDSSRSNRHWKRPSKKQRHQEMIPTPVARPTEQSSHPPTLLEEICRGKMKVNEKDIENSNPLSKGPKASLEKVKSTHAPLKISEQPLDTSRKQIAGHPELRPEIATVLSGIAKIHVNNLTPLEEYLNSYL
Homology
BLAST of PI0010117 vs. ExPASy TrEMBL
Match: A0A0A0KQU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 6.8e-30
Identity = 86/147 (58.50%), Postives = 103/147 (70.07%), Query Frame = 0

Query: 1   MAPIHEREVKEHREKSDSSRSNRHWKRPSKKQRHQEMIPTPVARPTEQSSHPPTLLEEIC 60
           MAP  E++V EH+++SD+++S+RHWKRP KK +      TP A+P + S  P  LLEEI 
Sbjct: 1   MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAK------TPAAKPVKVSLRPSALLEEIR 60

Query: 61  RGKMKVNEKDIENSNPLSKG--PKASLEKVKSTHAPLKISEQPLDTSRKQIAGHPE--LR 120
           RGKMKV  KDIEN  P   G  P  S  K  S HAPLKISE PL TS KQ A HP+  LR
Sbjct: 61  RGKMKVGGKDIENL-PSRGGAYPIVSSMKATSMHAPLKISEPPLGTSMKQAAEHPKPSLR 120

Query: 121 PEIATVLSGIAKIHVNNLTPLEEYLNS 144
            EI+T+LSGIAKIH ++LTPLEEYLNS
Sbjct: 121 LEISTILSGIAKIHADDLTPLEEYLNS 140

BLAST of PI0010117 vs. ExPASy TrEMBL
Match: A0A5D3BT42 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G00370 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.2e-27
Identity = 91/202 (45.05%), Postives = 106/202 (52.48%), Query Frame = 0

Query: 1   MAPIHEREVKEHREKSDSSRSNRHWKRPSKKQ---------------RHQEMIPTPVARP 60
           MA   E EV EH+E+SDSS+S+ HWKR  KK                +    + TPV+RP
Sbjct: 177 MAATLEEEVNEHKEQSDSSKSDCHWKRLLKKAKVSGDDLDERVDSAIKEVVTLKTPVSRP 236

Query: 61  TEQSSHPPTLLEEICRGKMKVNEKDIENSNPLSKG---PKASLEKVKSTHAPLKISEQPL 120
            EQS  P  L EEI RGKM V  KDI   +PLSKG   PKA L+K+ STHAPL+ SE PL
Sbjct: 237 AEQSLRPSALFEEIHRGKMTVGGKDI--GSPLSKGDSYPKAPLQKISSTHAPLRFSESPL 296

Query: 121 DTSRKQIAGH---------------------------------------PELRPEIATVL 146
           DTS +Q   +                                       P LRP+IATVL
Sbjct: 297 DTSNRQATRNPNPSQWIGEKVVSNFFKKITLCMWEDIQDKIMRTPFEYIPRLRPDIATVL 356

BLAST of PI0010117 vs. ExPASy TrEMBL
Match: A0A5A7U6Q5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3608G00010 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 6.0e-26
Identity = 86/162 (53.09%), Postives = 104/162 (64.20%), Query Frame = 0

Query: 6   EREVKEHREKSDSSRSNRHWKRPSKKQRHQ---------------EMIP-TPVARPTEQS 65
           E E+KEH+++S+S +S+RHWKRP KK +                 ++ P TPV++P +QS
Sbjct: 6   EEEIKEHKDESESIKSDRHWKRPLKKAKVSSDDLDGRVSSALGVPDVPPLTPVSKPAKQS 65

Query: 66  SHPPTLLEEICRGKMKVNEKDIENSNPLSKG---PKASLEKVKSTHAPLKISEQPLDTSR 125
             P TLLEEI RGKM V  KDI   +P SKG   PKA L+KV ST APLK SE  LDTS 
Sbjct: 66  LRPSTLLEEIRRGKMIVVGKDI--GSPSSKGDACPKAPLQKVNSTPAPLKFSESFLDTSN 125

Query: 126 KQIAGHPE---LRPEIATVLSGIAKIHVNNLTPLEEYLNSYL 146
           +Q   +PE   LR EI TVLS I KIH + L PLEEYLNSYL
Sbjct: 126 RQTTRNPEPSQLRLEIVTVLSEIEKIHADGLIPLEEYLNSYL 165

BLAST of PI0010117 vs. ExPASy TrEMBL
Match: A0A5D3C3D7 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001360 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.3e-25
Identity = 93/217 (42.86%), Postives = 106/217 (48.85%), Query Frame = 0

Query: 1   MAPIHEREVKEHREKSDSSRSNRHWKRPSKKQR----HQEMI------------------ 60
           MAP  E EVKEH+++SDSS+S+RHWKRP KK +    H +                    
Sbjct: 626 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDWFARLIEPDSDESLTGPHVV 685

Query: 61  ----------PTPVARPTEQSSHPPTLLEEICRGKMKVNEKDIE-NSNPLSKGPKASLEK 120
                      TPV +P EQS  P  L EEI RGKM V  KD+E +S+     PKASL K
Sbjct: 686 DSAFEEVGTSKTPVNKPAEQSLRPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKASLPK 745

Query: 121 VKSTHAPLKISEQPLDTSRKQIAGH----------------------------------- 146
           V STHAPLK SE PL TS KQ   +                                   
Sbjct: 746 VSSTHAPLKFSELPLGTSNKQTMRNSEPSQWVGEKVVSNFFQKTALCMWEDIQDKIMRTP 805

BLAST of PI0010117 vs. ExPASy TrEMBL
Match: A0A5A7UGW6 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00140 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 8.6e-25
Identity = 92/201 (45.77%), Postives = 105/201 (52.24%), Query Frame = 0

Query: 1   MAPIHEREVKEHREKSDSSRSNRHWKRPSKKQR--------------------------- 60
           MAP  E EV EH  +SDS++S+RHWKRP KK +                           
Sbjct: 611 MAPNLEDEVNEH--ESDSNKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLND 670

Query: 61  HQEMI-------------------------PTPVARPTEQSSHPPTLLEEICRGKMKVNE 120
           H E +                          TPV +P EQS  P TLLEEI RGKM V  
Sbjct: 671 HLEGLIEPDSDESLTGPHAVDSAFEEVGTSRTPVNKPAEQSLRPSTLLEEIRRGKMTVGG 730

Query: 121 KDIEN-SNPLSKGPKASLEKVKSTHAPLKISEQPLDTSRKQIAGHPE---LRPEIATVLS 146
           KD+E+ S+     PKASL+KV S HAPLK SE PL  S KQ   +PE   LRPEIATVLS
Sbjct: 731 KDLESPSSKEGACPKASLQKVSSAHAPLKFSELPLGVSNKQTMRNPEPSQLRPEIATVLS 790

BLAST of PI0010117 vs. NCBI nr
Match: KAE8648075.1 (hypothetical protein Csa_018860, partial [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.2e-30
Identity = 87/148 (58.78%), Postives = 104/148 (70.27%), Query Frame = 0

Query: 1   MAPIHEREVKEHREKSDSSRSNRHWKRPSKKQRHQEMIPTPVARPTEQSSHPPTLLEEIC 60
           MAP  E++V EH+++SD+++S+RHWKRP KK +      TP A+P + S  P  LLEEI 
Sbjct: 1   MAPTLEKDVAEHKDESDNNKSDRHWKRPLKKAK------TPAAKPVKVSLRPSALLEEIR 60

Query: 61  RGKMKVNEKDIENSNPLSKG--PKASLEKVKSTHAPLKISEQPLDTSRKQIAGHPE--LR 120
           RGKMKV  KDIEN  P   G  P  S  K  S HAPLKISE PL TS KQ A HP+  LR
Sbjct: 61  RGKMKVGGKDIENL-PSRGGAYPIVSSMKATSMHAPLKISEPPLGTSMKQAAEHPKPSLR 120

Query: 121 PEIATVLSGIAKIHVNNLTPLEEYLNSY 145
            EI+T+LSGIAKIH ++LTPLEEYLNSY
Sbjct: 121 LEISTILSGIAKIHADDLTPLEEYLNSY 141

BLAST of PI0010117 vs. NCBI nr
Match: KAA0035005.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK02345.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 6.5e-27
Identity = 91/202 (45.05%), Postives = 106/202 (52.48%), Query Frame = 0

Query: 1   MAPIHEREVKEHREKSDSSRSNRHWKRPSKKQ---------------RHQEMIPTPVARP 60
           MA   E EV EH+E+SDSS+S+ HWKR  KK                +    + TPV+RP
Sbjct: 177 MAATLEEEVNEHKEQSDSSKSDCHWKRLLKKAKVSGDDLDERVDSAIKEVVTLKTPVSRP 236

Query: 61  TEQSSHPPTLLEEICRGKMKVNEKDIENSNPLSKG---PKASLEKVKSTHAPLKISEQPL 120
            EQS  P  L EEI RGKM V  KDI   +PLSKG   PKA L+K+ STHAPL+ SE PL
Sbjct: 237 AEQSLRPSALFEEIHRGKMTVGGKDI--GSPLSKGDSYPKAPLQKISSTHAPLRFSESPL 296

Query: 121 DTSRKQIAGH---------------------------------------PELRPEIATVL 146
           DTS +Q   +                                       P LRP+IATVL
Sbjct: 297 DTSNRQATRNPNPSQWIGEKVVSNFFKKITLCMWEDIQDKIMRTPFEYIPRLRPDIATVL 356

BLAST of PI0010117 vs. NCBI nr
Match: KAA0050984.1 (hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 86/162 (53.09%), Postives = 104/162 (64.20%), Query Frame = 0

Query: 6   EREVKEHREKSDSSRSNRHWKRPSKKQRHQ---------------EMIP-TPVARPTEQS 65
           E E+KEH+++S+S +S+RHWKRP KK +                 ++ P TPV++P +QS
Sbjct: 6   EEEIKEHKDESESIKSDRHWKRPLKKAKVSSDDLDGRVSSALGVPDVPPLTPVSKPAKQS 65

Query: 66  SHPPTLLEEICRGKMKVNEKDIENSNPLSKG---PKASLEKVKSTHAPLKISEQPLDTSR 125
             P TLLEEI RGKM V  KDI   +P SKG   PKA L+KV ST APLK SE  LDTS 
Sbjct: 66  LRPSTLLEEIRRGKMIVVGKDI--GSPSSKGDACPKAPLQKVNSTPAPLKFSESFLDTSN 125

Query: 126 KQIAGHPE---LRPEIATVLSGIAKIHVNNLTPLEEYLNSYL 146
           +Q   +PE   LR EI TVLS I KIH + L PLEEYLNSYL
Sbjct: 126 RQTTRNPEPSQLRLEIVTVLSEIEKIHADGLIPLEEYLNSYL 165

BLAST of PI0010117 vs. NCBI nr
Match: TYK06433.1 (hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa])

HSP 1 Score: 125.2 bits (313), Expect = 4.7e-25
Identity = 93/217 (42.86%), Postives = 106/217 (48.85%), Query Frame = 0

Query: 1   MAPIHEREVKEHREKSDSSRSNRHWKRPSKKQR----HQEMI------------------ 60
           MAP  E EVKEH+++SDSS+S+RHWKRP KK +    H +                    
Sbjct: 626 MAPNLEEEVKEHKDESDSSKSDRHWKRPLKKAKVSGDHPDWFARLIEPDSDESLTGPHVV 685

Query: 61  ----------PTPVARPTEQSSHPPTLLEEICRGKMKVNEKDIE-NSNPLSKGPKASLEK 120
                      TPV +P EQS  P  L EEI RGKM V  KD+E +S+     PKASL K
Sbjct: 686 DSAFEEVGTSKTPVNKPAEQSLRPSALFEEIRRGKMTVGGKDLESHSSKEGVCPKASLPK 745

Query: 121 VKSTHAPLKISEQPLDTSRKQIAGH----------------------------------- 146
           V STHAPLK SE PL TS KQ   +                                   
Sbjct: 746 VSSTHAPLKFSELPLGTSNKQTMRNSEPSQWVGEKVVSNFFQKTALCMWEDIQDKIMRTP 805

BLAST of PI0010117 vs. NCBI nr
Match: KAA0053466.1 (hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-24
Identity = 92/201 (45.77%), Postives = 105/201 (52.24%), Query Frame = 0

Query: 1   MAPIHEREVKEHREKSDSSRSNRHWKRPSKKQR--------------------------- 60
           MAP  E EV EH  +SDS++S+RHWKRP KK +                           
Sbjct: 611 MAPNLEDEVNEH--ESDSNKSDRHWKRPLKKAKVSGDHPDGRGLSALEVPDVPPLSPLND 670

Query: 61  HQEMI-------------------------PTPVARPTEQSSHPPTLLEEICRGKMKVNE 120
           H E +                          TPV +P EQS  P TLLEEI RGKM V  
Sbjct: 671 HLEGLIEPDSDESLTGPHAVDSAFEEVGTSRTPVNKPAEQSLRPSTLLEEIRRGKMTVGG 730

Query: 121 KDIEN-SNPLSKGPKASLEKVKSTHAPLKISEQPLDTSRKQIAGHPE---LRPEIATVLS 146
           KD+E+ S+     PKASL+KV S HAPLK SE PL  S KQ   +PE   LRPEIATVLS
Sbjct: 731 KDLESPSSKEGACPKASLQKVSSAHAPLKFSELPLGVSNKQTMRNPEPSQLRPEIATVLS 790

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KQU96.8e-3058.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G264300 PE=4 SV=1[more]
A0A5D3BT423.2e-2745.05Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7U6Q56.0e-2653.09Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C3D72.3e-2542.86PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5A7UGW68.6e-2545.77PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Match NameE-valueIdentityDescription
KAE8648075.12.2e-3058.78hypothetical protein Csa_018860, partial [Cucumis sativus][more]
KAA0035005.16.5e-2745.05putative mitochondrial protein [Cucumis melo var. makuwa] >TYK02345.1 putative m... [more]
KAA0050984.11.2e-2553.09hypothetical protein E6C27_scaffold3608G00010 [Cucumis melo var. makuwa][more]
TYK06433.14.7e-2542.86hypothetical protein E5676_scaffold163G001360 [Cucumis melo var. makuwa][more]
KAA0053466.11.8e-2445.77hypothetical protein E6C27_scaffold190G00140 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0010117.1PI0010117.1mRNA