PI0010028 (gene) Melon (PI 482460) v1

Overview
NamePI0010028
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionBeta-galactosidase
Locationchr09: 5996144 .. 5996599 (+)
RNA-Seq ExpressionPI0010028
SyntenyPI0010028
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTTTTCTTTACCGCTTTTAATATGGTATCAGAGCAGGGTAAAGATAAAACCCTAGACACTGAATATGAGGAAATCAGAGCTAACCACGAGTATGTTGCCGCTGCTGATATGAATGTCGTCGTCGCCGCCATCGTGGACACCGCCATGGAAAAAGTGGTCCAGCAGCTTCAGAAGATGCTGGCGATCACGTCTGCCACCTCCGCGGAGTCGTCCGGACAGCACAGTGCTGCAGATCTGCATCACGCGTTGTCGCTGCCGGGCGCGTGGGCCCACGCGTCGCTGTCTGTGAGTCTCACCACCCAGATGAATGGATTCGCCTTGCCGCCGCCAGTCCAACAGTCTAACCCTTCTGCCAATACGCACGCTCACGCGCCGCCGCTGCCCTCCGACCATGAACAGCTGCCTATTTCGACTACCCAGCCGCCGCTGTCTGTTAATCCTTCACAATAG

mRNA sequence

ATGTCTCTTTTCTTTACCGCTTTTAATATGGTATCAGAGCAGGGTAAAGATAAAACCCTAGACACTGAATATGAGGAAATCAGAGCTAACCACGAGTATGTTGCCGCTGCTGATATGAATGTCGTCGTCGCCGCCATCGTGGACACCGCCATGGAAAAAGTGGTCCAGCAGCTTCAGAAGATGCTGGCGATCACGTCTGCCACCTCCGCGGAGTCGTCCGGACAGCACAGTGCTGCAGATCTGCATCACGCGTTGTCGCTGCCGGGCGCGTGGGCCCACGCGTCGCTGTCTGTGAGTCTCACCACCCAGATGAATGGATTCGCCTTGCCGCCGCCAGTCCAACAGTCTAACCCTTCTGCCAATACGCACGCTCACGCGCCGCCGCTGCCCTCCGACCATGAACAGCTGCCTATTTCGACTACCCAGCCGCCGCTGTCTGTTAATCCTTCACAATAG

Coding sequence (CDS)

ATGTCTCTTTTCTTTACCGCTTTTAATATGGTATCAGAGCAGGGTAAAGATAAAACCCTAGACACTGAATATGAGGAAATCAGAGCTAACCACGAGTATGTTGCCGCTGCTGATATGAATGTCGTCGTCGCCGCCATCGTGGACACCGCCATGGAAAAAGTGGTCCAGCAGCTTCAGAAGATGCTGGCGATCACGTCTGCCACCTCCGCGGAGTCGTCCGGACAGCACAGTGCTGCAGATCTGCATCACGCGTTGTCGCTGCCGGGCGCGTGGGCCCACGCGTCGCTGTCTGTGAGTCTCACCACCCAGATGAATGGATTCGCCTTGCCGCCGCCAGTCCAACAGTCTAACCCTTCTGCCAATACGCACGCTCACGCGCCGCCGCTGCCCTCCGACCATGAACAGCTGCCTATTTCGACTACCCAGCCGCCGCTGTCTGTTAATCCTTCACAATAG

Protein sequence

MSLFFTAFNMVSEQGKDKTLDTEYEEIRANHEYVAAADMNVVVAAIVDTAMEKVVQQLQKMLAITSATSAESSGQHSAADLHHALSLPGAWAHASLSVSLTTQMNGFALPPPVQQSNPSANTHAHAPPLPSDHEQLPISTTQPPLSVNPSQ
Homology
BLAST of PI0010028 vs. ExPASy TrEMBL
Match: A0A5A7V3J5 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00020 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-06
Identity = 46/122 (37.70%), Postives = 59/122 (48.36%), Query Frame = 0

Query: 10  MVSEQGKDKTLDTEYEEIRANHEYVAAADMNVVVAAIVDTAMEKVVQQLQKMLAITSATS 69
           MVSEQ  ++TL+    E +   E V AA     +AA VD A+EK++Q LQK     +   
Sbjct: 1   MVSEQSNNETLENNLGETQIETERVTAAAAAAGIAAAVDAAVEKLLQNLQKPPIYPTGVV 60

Query: 70  AESSGQHSAADLHHALSLPGAWAHASLSVSLTTQMNGFALPPPVQQSNPSANTHAHAPPL 129
            +     S   L HA  + G WAHA     +T     F  P  VQ SNPS + H HAP  
Sbjct: 61  PQPYASPSDQKLIHAPLVSGVWAHAPPPFHVTAHPVPFYAPLDVQPSNPSGHPHPHAPST 120

Query: 130 PS 132
            S
Sbjct: 121 SS 122

BLAST of PI0010028 vs. ExPASy TrEMBL
Match: A0A5A7T3J8 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G00060 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.2e-06
Identity = 57/141 (40.43%), Postives = 70/141 (49.65%), Query Frame = 0

Query: 10  MVSEQGKDKTLDTEYEEIRANHEYVAAADMNVVVAAIVDTAMEKVVQQLQKMLAITSATS 69
           MVSEQGKD TLDT   E +   E  AAA   VVV         K++QQLQKM  +T+  S
Sbjct: 1   MVSEQGKDDTLDTVINETK--KETAAAATAAVVVVG-------KLLQQLQKMPVVTTGAS 60

Query: 70  AESSGQHSAADLHHALSLPGAWAHASLSVSLTTQMNGFALPPPVQQSNPSANTHAHAPPL 129
           +ESS QHS  +  HA SL   WAH   S  LTTQ     +  PVQ   P    H+ +   
Sbjct: 61  SESSAQHSGQNPPHAPSLSCVWAHVPPSNHLTTQPIVSHVSFPVQ---PIIQIHSRS-SF 120

Query: 130 PSDHEQLPISTTQPPLSVNPS 151
             D       +T  P+S+  S
Sbjct: 121 EVDESSTQSKSTNLPMSLKNS 128

BLAST of PI0010028 vs. ExPASy TrEMBL
Match: A0A5D3D767 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00420 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-05
Identity = 53/145 (36.55%), Postives = 69/145 (47.59%), Query Frame = 0

Query: 10  MVSEQGKDKTLDTEYEEIRANHEYVAAADMNVVVAAIVDTAM----EKVVQQLQKMLAIT 69
           MVSEQ  ++TL+   EE +   E V      VVVAA VD A+    EK++  LQK     
Sbjct: 1   MVSEQSNNETLENNLEETQIETEPV-----TVVVAAAVDAAVVVATEKLLHNLQKPPIYP 60

Query: 70  SATSAESSGQHSAADLHHALSLPGAWAHASLSVSLTTQMNGFALPPPVQQSNPSANTHAH 129
           +   ++     S   + HA  + GAWAH S    +T Q   F  P  VQ SN S + H H
Sbjct: 61  TGVVSQPYAPLSDQKMIHASLMSGAWAHVSPPFHVTAQPVPFYAPSDVQPSNSSGHPHPH 120

Query: 130 APPLPSDHEQLPISTTQPPLSVNPS 151
           APP+         S  Q P +VN S
Sbjct: 121 APPM---------SFVQQPSTVNLS 131

BLAST of PI0010028 vs. ExPASy TrEMBL
Match: A0A5A7V0I4 (Putative tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00400 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 2.7e-05
Identity = 53/150 (35.33%), Postives = 69/150 (46.00%), Query Frame = 0

Query: 13  EQGKDKTLDTEYEEIRANHEYVAAADMNVVVAAIVDTAMEKVVQQLQKMLAITSATSAES 72
           EQ  ++TL+   EE +   E V AA     V A V TAMEK++Q LQK     +    + 
Sbjct: 261 EQSNNETLENNLEETQIETEPVTAA----AVDAAVPTAMEKLLQNLQKPPIYPTGVVPQP 320

Query: 73  SGQHSAADLHHALSLPGAWAHASLSVSLTTQMNGFALPPPVQQSNPSANTHAHAPPLPSD 132
               S   + H   + GAWAHA     +T     F  P  VQ SNPS + H HAPP+ S+
Sbjct: 321 YAPPSDQKMIHVPLVSGAWAHAPPPFHVTAHPVLFYAPSDVQPSNPSGHPHPHAPPMSSE 380

Query: 133 H-------------EQLPI-STTQPPLSVN 149
                         +QL + S  QPP S N
Sbjct: 381 QQPSIVNLSNQYSKQQLYVDSLQQPPFSGN 406

BLAST of PI0010028 vs. ExPASy TrEMBL
Match: A0A5A7U5U8 (Chaperonin Cpn60 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G00760 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 6.1e-05
Identity = 49/141 (34.75%), Postives = 66/141 (46.81%), Query Frame = 0

Query: 8   FNMVSEQGKDKTLDTEYEEIRANHEYVAAADMNVVVAAIVDTAMEKVVQQLQKMLAITSA 67
           FNMVSEQ  ++ L+    EI+   E V  A +  + A I     EK++Q LQK+L   + 
Sbjct: 167 FNMVSEQSNNEILENNLGEIQNETEPVTTAAIARIAATI-----EKLLQNLQKLLIYPTG 226

Query: 68  TSAESSGQHSAADLHHALSLPGAWAHASLSVSLTTQMNGFALPPPVQQSNPSANTHAHAP 127
              +         + HA  L GAWAHA  S  LT Q         VQ S PS + H HA 
Sbjct: 227 VVLQPYAPPFDQKIPHAPLLTGAWAHAPSSFHLTAQPIPLYASSDVQPSYPSGHPHPHA- 286

Query: 128 PLPSDHEQLPISTTQPPLSVN 149
                   LP+++ Q P +VN
Sbjct: 287 --------LPMNSGQQPSTVN 293

BLAST of PI0010028 vs. NCBI nr
Match: KAA0061447.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 5.1e-06
Identity = 46/122 (37.70%), Postives = 59/122 (48.36%), Query Frame = 0

Query: 10  MVSEQGKDKTLDTEYEEIRANHEYVAAADMNVVVAAIVDTAMEKVVQQLQKMLAITSATS 69
           MVSEQ  ++TL+    E +   E V AA     +AA VD A+EK++Q LQK     +   
Sbjct: 1   MVSEQSNNETLENNLGETQIETERVTAAAAAAGIAAAVDAAVEKLLQNLQKPPIYPTGVV 60

Query: 70  AESSGQHSAADLHHALSLPGAWAHASLSVSLTTQMNGFALPPPVQQSNPSANTHAHAPPL 129
            +     S   L HA  + G WAHA     +T     F  P  VQ SNPS + H HAP  
Sbjct: 61  PQPYASPSDQKLIHAPLVSGVWAHAPPPFHVTAHPVPFYAPLDVQPSNPSGHPHPHAPST 120

Query: 130 PS 132
            S
Sbjct: 121 SS 122

BLAST of PI0010028 vs. NCBI nr
Match: KAA0037910.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK18987.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 8.7e-06
Identity = 57/141 (40.43%), Postives = 70/141 (49.65%), Query Frame = 0

Query: 10  MVSEQGKDKTLDTEYEEIRANHEYVAAADMNVVVAAIVDTAMEKVVQQLQKMLAITSATS 69
           MVSEQGKD TLDT   E +   E  AAA   VVV         K++QQLQKM  +T+  S
Sbjct: 1   MVSEQGKDDTLDTVINETK--KETAAAATAAVVVVG-------KLLQQLQKMPVVTTGAS 60

Query: 70  AESSGQHSAADLHHALSLPGAWAHASLSVSLTTQMNGFALPPPVQQSNPSANTHAHAPPL 129
           +ESS QHS  +  HA SL   WAH   S  LTTQ     +  PVQ   P    H+ +   
Sbjct: 61  SESSAQHSGQNPPHAPSLSCVWAHVPPSNHLTTQPIVSHVSFPVQ---PIIQIHSRS-SF 120

Query: 130 PSDHEQLPISTTQPPLSVNPS 151
             D       +T  P+S+  S
Sbjct: 121 EVDESSTQSKSTNLPMSLKNS 128

BLAST of PI0010028 vs. NCBI nr
Match: TYK19407.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 58.9 bits (141), Expect = 4.3e-05
Identity = 53/145 (36.55%), Postives = 69/145 (47.59%), Query Frame = 0

Query: 10  MVSEQGKDKTLDTEYEEIRANHEYVAAADMNVVVAAIVDTAM----EKVVQQLQKMLAIT 69
           MVSEQ  ++TL+   EE +   E V      VVVAA VD A+    EK++  LQK     
Sbjct: 1   MVSEQSNNETLENNLEETQIETEPV-----TVVVAAAVDAAVVVATEKLLHNLQKPPIYP 60

Query: 70  SATSAESSGQHSAADLHHALSLPGAWAHASLSVSLTTQMNGFALPPPVQQSNPSANTHAH 129
           +   ++     S   + HA  + GAWAH S    +T Q   F  P  VQ SN S + H H
Sbjct: 61  TGVVSQPYAPLSDQKMIHASLMSGAWAHVSPPFHVTAQPVPFYAPSDVQPSNSSGHPHPH 120

Query: 130 APPLPSDHEQLPISTTQPPLSVNPS 151
           APP+         S  Q P +VN S
Sbjct: 121 APPM---------SFVQQPSTVNLS 131

BLAST of PI0010028 vs. NCBI nr
Match: KAA0059996.1 (putative tRNA pseudouridine synthase [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 5.6e-05
Identity = 53/150 (35.33%), Postives = 69/150 (46.00%), Query Frame = 0

Query: 13  EQGKDKTLDTEYEEIRANHEYVAAADMNVVVAAIVDTAMEKVVQQLQKMLAITSATSAES 72
           EQ  ++TL+   EE +   E V AA     V A V TAMEK++Q LQK     +    + 
Sbjct: 261 EQSNNETLENNLEETQIETEPVTAA----AVDAAVPTAMEKLLQNLQKPPIYPTGVVPQP 320

Query: 73  SGQHSAADLHHALSLPGAWAHASLSVSLTTQMNGFALPPPVQQSNPSANTHAHAPPLPSD 132
               S   + H   + GAWAHA     +T     F  P  VQ SNPS + H HAPP+ S+
Sbjct: 321 YAPPSDQKMIHVPLVSGAWAHAPPPFHVTAHPVLFYAPSDVQPSNPSGHPHPHAPPMSSE 380

Query: 133 H-------------EQLPI-STTQPPLSVN 149
                         +QL + S  QPP S N
Sbjct: 381 QQPSIVNLSNQYSKQQLYVDSLQQPPFSGN 406

BLAST of PI0010028 vs. NCBI nr
Match: TYK07826.1 (chaperonin CPN60-2 [Cucumis melo var. makuwa])

HSP 1 Score: 57.4 bits (137), Expect = 1.3e-04
Identity = 49/141 (34.75%), Postives = 66/141 (46.81%), Query Frame = 0

Query: 8   FNMVSEQGKDKTLDTEYEEIRANHEYVAAADMNVVVAAIVDTAMEKVVQQLQKMLAITSA 67
           FNMVSEQ  ++ L+    EI+   E V  A +  + A I     EK++Q LQK+L   + 
Sbjct: 152 FNMVSEQSNNEILENNLGEIQNETEPVTTAAIARIAATI-----EKLLQNLQKLLIYPTG 211

Query: 68  TSAESSGQHSAADLHHALSLPGAWAHASLSVSLTTQMNGFALPPPVQQSNPSANTHAHAP 127
              +         + HA  L GAWAHA  S  LT Q         VQ S PS + H HA 
Sbjct: 212 VVLQPYAPPFDQKIPHAPLLTGAWAHAPSSFHLTAQPIPLYASSDVQPSYPSGHPHPHA- 271

Query: 128 PLPSDHEQLPISTTQPPLSVN 149
                   LP+++ Q P +VN
Sbjct: 272 --------LPMNSGQQPSTVN 278

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V3J52.5e-0637.70Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00... [more]
A0A5A7T3J84.2e-0640.43Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold154G0... [more]
A0A5D3D7672.1e-0536.55Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O... [more]
A0A5A7V0I42.7e-0535.33Putative tRNA pseudouridine synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5A7U5U86.1e-0534.75Chaperonin Cpn60 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold673G007... [more]
Match NameE-valueIdentityDescription
KAA0061447.15.1e-0637.70Beta-galactosidase [Cucumis melo var. makuwa][more]
KAA0037910.18.7e-0640.43Beta-galactosidase [Cucumis melo var. makuwa] >TYK18987.1 Beta-galactosidase [Cu... [more]
TYK19407.14.3e-0536.55Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa][more]
KAA0059996.15.6e-0535.33putative tRNA pseudouridine synthase [Cucumis melo var. makuwa][more]
TYK07826.11.3e-0434.75chaperonin CPN60-2 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 134..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..151

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0010028.1PI0010028.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process