PI0009984 (gene) Melon (PI 482460) v1

Overview
NamePI0009984
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description50S ribosomal protein 5, chloroplastic
Locationchr08: 7096463 .. 7099538 (+)
RNA-Seq ExpressionPI0009984
SyntenyPI0009984
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAGGGGCTCCCAGTTTACACCATGGCTTCTTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTCGCCGTCGCCCTCATGTTTTCCAGCGACTTCTTCCATCCCTAGTAAGTCTCTCTTCCTGAACTTTCCTTTCCCTTCCTCTGTTCGACGGGATCGAATGAATGTTTTTGTCTAATTCTGATTTTTATCTTCATTTCTCTTTCTACTTCATTGTTTGTTGTGCGATTTATTCAAATGGGTAATTTCTTTCTCTCGAACTCGAAAAACTATGTGGTGCTTCAGAAAATTTCCTTCCTTGCAGTCATTTGTCCGTCAGGCATTTTGTCAAACAGTTGGTATCTTTATTTTGAGACTCTCAATTTTTTATGCTTCTCTTTTGATGTGCACTGGATCTCGATCTCGCTTGCCTGAATGTGTTTTTGTTCTGTATCTTGTGTTTTATATGCTGATTGCTCTGTTTCTTGTTCATCATCCTCAATTTCACATATAGTTTACAAGTTTCCTTGTCCTGAAATACGGTTGAATTTCAACGAAGAGAGATTGTTTTGAGTGAATTTCATGAATATTAATTTGATTCATATAATATCAAATAGGAGAAATTAACATTATAAGGATCCCTAGCCCCCCACGCTGTGATAGATTACATATTAAAAAACGAACTCAATCAAAAGCCCTTTTAAATAGATTACAGTTTATTTATTCTTTTGTTATATTACAACTAAACAAGCTATTTCAACTTGGGTTATATTAATAAAAGAAAGTATTACAAGCTTGTTGGCGAAACTTTTAAAGTTTGTTTACTAACTAATGGTCTATTAAGTGTTTAATGAGTCTCTAAACTTTTAATATTGTTTATGGTAGATCTCTAGGTTTTAAACAATACCTAGTAGGTCTTTAAAATATTAGTCTTAAACTTTTAACTGTCTTTAGTTGGCTCTGAATTTTTATAGAGATCTCATATATCAGGTTTACAATCTATTAAACACTCTTTAAAATTAAGGGATCTCTTAGACACAATTCGATAAGCTTAGAGACCAAAATAATACATATTCTTGGCTTTAATTGGAATGATTATTTCCTTGCATTTTATGAATCTCAGTCCAATTTCCATTCCTTTATTGTGGTTCCCATTTCAGGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACGCTTTAATGGAGTCGGGCTACGAAACCTCTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGATTGATGCTACGGGGGAAACTGACAGTAGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCTTTAGCTCCTCAATTCAATTCTTGCAGATCTAGAGGTGCCATTTCTCCTCATCGCTTCCATTTACTGTCTTATTTCTTTATACTTTCAAGGAAATGTACTTGCTTTTTAATATACCTGAAAGAATCCAGTGAGTAATGAAATGTGCAAATTGTTCTTAGTTTTGAATGTCTAAATTGTGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAAATTTTTATTGGTAATCTTGCTAAAAAAACCTTGCACAAAGGCATTGTCTTAGAAACTTAGACTACGATGAAATTGGTTAATAAGAGGCTTTTTTATTTTTCTTTTGTCTCTTATTTCTTTTCCAAATAGAATGAGAAGGCACGTCGAGATGAATGCCCCCCCCCCCCCACATCAAGGGAGGAGTTTGAGGTTGACGTCTGTCTTAATTTGTACCGACTGTGGTTGAATAGAGATGAAAGGTAGGGGGAATATACACTTCAACTAAAACAAAGAGTTCTAGTGAGTGGATTTTATTTTCTGCACTCTTAGAATAGTATGTAGGGACAGGAAGCATCTGCATTTACATGCTCTGTAGGAAGTACGGCATTCATGATGGCAAAACACATTTGAATATCTTTGTTTTTTAGGATTTAGAGCTCATTTGATAAGCTTTGTCCTTTCAATGTGTTTGAGTGAACCCCTCAATAGATGGGTAGGTTTTAGAGTTTAGTGTAACTTTAACCCATTAAAACTACTCATTGTTGTTTGACAACAACAAAACAACAGAAGATATGTGGATGATTTGAACCTTCAACATCTTGGTCAAATGTGTTGACTAGTTTAGCTAAACTAAAGTTGATTTTTTTTCTTGCTTCTTTCCAAGAGTATTTATAGGGAAAAAATGTGCTTTTCTGAAAAAACACTAGTCTCAACATTTATCCTAAAATTAACTCTTAATTTGGTTTTTTAAATTATCATTATGCATACATGAGAGTTCAAAGTGATAAAATAATATACATATTTTCACCATCTCGAGATGTTCTATTTTCTTTTCAATTAAGTAGTATATGTTTGTTTGTTTTATAATAGTTGTGTTATAATCTCCTCTTAAGCCTTAATGGTCATTACAACCTAAGGTTCAATTTCTACTTTATATTCACTCATTAATTCTAAACATCTAAACATATGTTTTACAGTGGATAATTGAATCGATAGCACTTTTTGTATTGAAATATGTTTAAGGGTTGTTCATGGGTCCATAATGTTTTTCTTTGATTCAAGACTTCGAGTACAGAAGGGGGGTGGGCGGCTGGAGCCCTTTCTCTGGCTCTTCTTTCTTCTTCTTGCTTTATTTCTTTTGGTCTTGAATCAAAGAAAAATGGGACGTCGTTCACTGAAATCGTCGGATCGACTGCTCTTGACCGGTGGCTTGTCTTCTTTCTTTTTCTTTCTTCTTTCTTTAAAGCATTGGCGATGTCATCCCAGGATTTAAGGGTAGATTTCTCAATCTGTGTGAACCCCCATTCATTCTTTGCAATGGTAATATTATCTCATGCTTGGATTGAGC

mRNA sequence

GTGAGGGGCTCCCAGTTTACACCATGGCTTCTTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTCGCCGTCGCCCTCATGTTTTCCAGCGACTTCTTCCATCCCTAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACGCTTTAATGGAGTCGGGCTACGAAACCTCTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGATTGATGCTACGGGGGAAACTGACAGTAGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGATAATCTTTAGCTCCTCAATTCAATTCTTGCAGATCTAGAGGTGCCATTTCTCCTCATCGCTTCCATTTACTGTCTTATTTCTTTATACTTTCAAGGAAATGTACTTGCTTTTTAATATACCTGAAAGAATCCAGTGAGTAATGAAATGTGCAAATTGTTCTTAGTTTTGAATGTCTAAATTGTGAGTTGAAAGATGACTGTACAGTTCAACAAGCTTGAATACTTGATTTAAATTTTTATTGGTAATCTTGCTAAAAAAACCTTGCACAAAGGCATTGTCTTAGAAACTTAGACTACGATGAAATTGGTTAATAAGAGGCTTTTTTATTTTTCTTTTGTCTCTTATTTCTTTTCCAAATAGAATGAGAAGGCACGTCGAGATGAATGCCCCCCCCCCCCCACATCAAGGGAGGAGTTTGAGGTTGACGTCTGTCTTAATTTGTACCGACTGTGGTTGAATAGAGATGAAAGGTAGGGGGAATATACACTTCAACTAAAACAAAGAGTTCTAGTGAGTGGATTTTATTTTCTGCACTCTTAGAATAGTATGTAGGGACAGGAAGCATCTGCATTTACATGCTCTGTAGGAAGTACGGCATTCATGATGGCAAAACACATTTGAATATCTTTGTTTTTTAGGATTTAGAGCTCATTTGATAAGCTTTGTCCTTTCAATGTGTTTGAGTGAACCCCTCAATAGATGGGTAGGTTTTAGAGTTTAGTGTAACTTTAACCCATTAAAACTACTCATTGTTGTTTGACAACAACAAAACAACAGAAGATATGTGGATGATTTGAACCTTCAACATCTTGGTCAAATGTGTTGACTAGTTTAGCTAAACTAAAGTTGATTTTTTTTCTTGCTTCTTTCCAAGAGTATTTATAGGGAAAAAATGTGCTTTTCTGAAAAAACACTAGTCTCAACATTTATCCTAAAATTAACTCTTAATTTGGTTTTTTAAATTATCATTATGCATACATGAGAGTTCAAAGTGATAAAATAATATACATATTTTCACCATCTCGAGATGTTCTATTTTCTTTTCAATTAAGTAGTATATGTTTGTTTGTTTTATAATAGTTGTGTTATAATCTCCTCTTAAGCCTTAATGGTCATTACAACCTAAGGTTCAATTTCTACTTTATATTCACTCATTAATTCTAAACATCTAAACATATGTTTTACAGTGGATAATTGAATCGATAGCACTTTTTGTATTGAAATATGTTTAAGGGTTGTTCATGGGTCCATAATGTTTTTCTTTGATTCAAGACTTCGAGTACAGAAGGGGGGTGGGCGGCTGGAGCCCTTTCTCTGGCTCTTCTTTCTTCTTCTTGCTTTATTTCTTTTGGTCTTGAATCAAAGAAAAATGGGACGTCGTTCACTGAAATCGTCGGATCGACTGCTCTTGACCGGTGGCTTGTCTTCTTTCTTTTTCTTTCTTCTTTCTTTAAAGCATTGGCGATGTCATCCCAGGATTTAAGGGTAGATTTCTCAATCTGTGTGAACCCCCATTCATTCTTTGCAATGGTAATATTATCTCATGCTTGGATTGAGC

Coding sequence (CDS)

ATGGCTTCTTTTCTCCTCTGCTCCAATCCCCTCTCCACCTCTTTCCATTTTTCTACGTCGCCGTCGCCCTCATGTTTTCCAGCGACTTCTTCCATCCCTAGTTCTATGTTGCTCATGAAGCCTATTGGGTTTCAGCCAAAACGCTTTAATGGAGTCGGGCTACGAAACCTCTCTTTTGTTGAAAATACAGCGTCGTTAGTTGTCAAAGCTGCATCTGAGATTGATGCTACGGGGGAAACTGACAGTAGTGAAGTGCAGCCCGCTGCAGAAGCTAAAAAGGAGGATGTTCCAGTTGATAAACTTCCATTAGAATCAAAGTTACAAGAGAGGCTGGAACAGAAGGCAAGAATGAAGTTAGCAAAAAAGATTAGGCTGCGGAGGAAGCGGCTTGTTCAGAAACGCCATTTGAGGAAGAAGGGACGATGGCCTCCATCAAAGATGAAGAAGTTGAAGAATGTTTGA

Protein sequence

MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Homology
[Close]
BLAST of PI0009984 vs. ExPASy Swiss-Prot
Match: Q9LER7 (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-15
Identity = 74/152 (48.68%), Postives = 89/152 (58.55%), Query Frame = 0 

Query: 5   LLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTA 64
           LLC N L +    S+S S S    + S  S +L +KP   + K  N V L   S   +  
Sbjct: 3   LLCFNSLPSLSSLSSS-SSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNSSHG 62

Query: 65  SLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQER---LEQKARMKLAK 124
            +VVKAA+      E +S E      A    VPVDKLPLESK  +    LE + +MKLAK
Sbjct: 63  RIVVKAAASGVDGAEPESKEEPKTVVAA---VPVDKLPLESKEAKEKLLLELRLKMKLAK 122

Query: 125 KIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 123 KIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]
BLAST of PI0009984 vs. ExPASy Swiss-Prot
Match: P27684 (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSRP5 PE=1 SV=2)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-14
Identity = 53/91 (58.24%), Postives = 66/91 (72.53%), Query Frame = 0 

Query: 63  TASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLAKK 122
           T   +V AA+E  A  + D S+V+ A      ++ V  LPLESKLQ +LEQK +MK+AKK
Sbjct: 58  TVVAMVSAAAEETAGEDGDQSKVEEA------NISVQNLPLESKLQLKLEQKIKMKMAKK 117

Query: 123 IRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           IRLRR RL++KR LRK+G WPPSKMKKLKNV
Sbjct: 118 IRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV 142

[Close]
BLAST of PI0009984 vs. ExPASy Swiss-Prot
Match: P11891 (50S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.0e-14
Identity = 69/161 (42.86%), Postives = 96/161 (59.63%), Query Frame = 0 

Query: 5   LLCSNPLSTSFHFSTS---PSPSCFPATS---SIPSSML----LMKPIGFQPKRFNGVGL 64
           LLC N  +T+   S+S   P P+  P +     +P++ L    ++ PI  +P+       
Sbjct: 3   LLCFNSFTTTPVTSSSSLFPHPTANPISRVRIGLPTNCLKGFRILTPIVQKPR------- 62

Query: 65  RNLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKED--VPVDKLPLESKLQERLE 124
           +N  F+ + A           A  +++ ++    +E+KKE   V VDKLPLESKL+ER E
Sbjct: 63  KNSIFIASAA-----------AGADSNVADGVEESESKKESDVVSVDKLPLESKLKEREE 122

Query: 125 QKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           +  +MKLAKKIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Sbjct: 123 RMLKMKLAKKIRLKRKRLVQKRRLRKKGNWPPSKMKKLEGV 145

[Close]
BLAST of PI0009984 vs. ExPASy TrEMBL
Match: A0A0A0L3F4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 3.7e-66
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 0 

Query: 1   MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFV 60
           MASFLL SNPLSTSFHFSTSPSPSCFP TS+IPSSMLLMKPIGFQPK FNGV LRN SFV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASE DATGETDSS+VQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]
BLAST of PI0009984 vs. ExPASy TrEMBL
Match: A0A1S3C2X0 (50S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 2.1e-61
Identity = 140/153 (91.50%), Postives = 141/153 (92.16%), Query Frame = 0 

Query: 1   MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFV 60
           MASFLLCSNPLSTSFHFST     CFP TS+IPSSMLLMKPIGFQPK FNGV LRN  FV
Sbjct: 1   MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60

Query: 61  ENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASE DATGE DSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]
BLAST of PI0009984 vs. ExPASy TrEMBL
Match: A0A6J1DNT9 (50S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111021747 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.4e-57
Identity = 130/156 (83.33%), Postives = 139/156 (89.10%), Query Frame = 0 

Query: 3   SFLLCSNPLSTS-----FHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNL 62
           +FLLCSNPLSTS     F  S SPSPSCFP TS+ PSS+LLM+P+GFQPK FNGV LRN+
Sbjct: 2   AFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRNV 61

Query: 63  SFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
           SFVENTASL+VKA SEID TGETDS+E QP AEAKKEDVPVDKLPLESKLQERLEQK RM
Sbjct: 62  SFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]
BLAST of PI0009984 vs. ExPASy TrEMBL
Match: A0A6J1HS41 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111467286 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.4e-55
Identity = 127/156 (81.41%), Postives = 134/156 (85.90%), Query Frame = 0 

Query: 3   SFLLCSNPLSTSFHFST-----SPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNL 62
           +FLLCSNPLS S H ST     SPSPSCFP   S  +SM LMKP GFQPK FNGV LRN 
Sbjct: 2   AFLLCSNPLSISLHSSTLSPSPSPSPSCFPGNFSALNSMSLMKPTGFQPKHFNGVRLRNP 61

Query: 63  SFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
           SFVENT S +VKAASEID TGETDS+E +P+AEAKKEDVPVDKLPLESKLQERLEQKARM
Sbjct: 62  SFVENTVSFIVKAASEIDTTGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKARM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]
BLAST of PI0009984 vs. ExPASy TrEMBL
Match: A0A6J1GE62 (50S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111453134 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.1e-54
Identity = 128/158 (81.01%), Postives = 135/158 (85.44%), Query Frame = 0 

Query: 3   SFLLCSNPLSTSFHFST-------SPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLR 62
           +FLLCSNPLS S H ST       SPSPSCFPA  +  +SMLLMKP GFQPK FNGV LR
Sbjct: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLMKPTGFQPKHFNGVRLR 61

Query: 63  NLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122
           N SFVENT S +VKAASEIDATGETDS+E +P AEAKKEDV VDKLPLESKLQERLEQKA
Sbjct: 62  NPSFVENTVSFIVKAASEIDATGETDSNEPKPPAEAKKEDVSVDKLPLESKLQERLEQKA 121

Query: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]
BLAST of PI0009984 vs. NCBI nr
Match: XP_004144312.1 (50S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypothetical protein Csa_012356 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 7.6e-66
Identity = 145/153 (94.77%), Postives = 147/153 (96.08%), Query Frame = 0 

Query: 1   MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFV 60
           MASFLL SNPLSTSFHFSTSPSPSCFP TS+IPSSMLLMKPIGFQPK FNGV LRN SFV
Sbjct: 1   MASFLLSSNPLSTSFHFSTSPSPSCFPPTSAIPSSMLLMKPIGFQPKHFNGVRLRNHSFV 60

Query: 61  ENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASE DATGETDSS+VQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGETDSSDVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 153

[Close]
BLAST of PI0009984 vs. NCBI nr
Match: XP_008455762.1 (PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo])

HSP 1 Score: 245.0 bits (624), Expect = 4.3e-61
Identity = 140/153 (91.50%), Postives = 141/153 (92.16%), Query Frame = 0 

Query: 1   MASFLLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFV 60
           MASFLLCSNPLSTSFHFST     CFP TS+IPSSMLLMKPIGFQPK FNGV LRN  FV
Sbjct: 1   MASFLLCSNPLSTSFHFST--LHPCFPPTSAIPSSMLLMKPIGFQPKTFNGVRLRNHPFV 60

Query: 61  ENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120
           ENTASLVVKAASE DATGE DSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA
Sbjct: 61  ENTASLVVKAASETDATGEIDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARMKLA 120

Query: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 KKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 151

[Close]
BLAST of PI0009984 vs. NCBI nr
Match: XP_038881132.1 (50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881134.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 137/158 (86.71%), Postives = 140/158 (88.61%), Query Frame = 0 

Query: 1   MASFLLCSNPLSTSFH---FS--TSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLR 60
           MASFLLCSNPLSTS H   FS   SPSPSCFPATS+ PS MLLMKPIGFQPK FNGV L 
Sbjct: 1   MASFLLCSNPLSTSLHSFPFSPPPSPSPSCFPATSAAPSPMLLMKPIGFQPKHFNGVRLG 60

Query: 61  NLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 120
             SFVEN ASL+VKAASEIDA G+TDSSE QP AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 61  KPSFVENMASLIVKAASEIDAMGDTDSSESQPPAEAKKEDVPVDKLPLESKLQERLEQKA 120

Query: 121 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Sbjct: 121 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 158

[Close]
BLAST of PI0009984 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 231.5 bits (589), Expect = 4.9e-57
Identity = 130/156 (83.33%), Postives = 139/156 (89.10%), Query Frame = 0 

Query: 3   SFLLCSNPLSTS-----FHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNL 62
           +FLLCSNPLSTS     F  S SPSPSCFP TS+ PSS+LLM+P+GFQPK FNGV LRN+
Sbjct: 2   AFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVGFQPKIFNGVRLRNV 61

Query: 63  SFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKARM 122
           SFVENTASL+VKA SEID TGETDS+E QP AEAKKEDVPVDKLPLESKLQERLEQK RM
Sbjct: 62  SFVENTASLIVKATSEIDGTGETDSNEPQPPAEAKKEDVPVDKLPLESKLQERLEQKTRM 121

Query: 123 KLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 KLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 157

[Close]
BLAST of PI0009984 vs. NCBI nr
Match: XP_023543496.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.8 bits (569), Expect = 1.0e-54
Identity = 128/158 (81.01%), Postives = 135/158 (85.44%), Query Frame = 0 

Query: 3   SFLLCSNPLSTSFHFST-------SPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLR 62
           +FLLCSNPLS S H ST       SPSPSCFP   +  +SMLLMKP GFQPK FNGV LR
Sbjct: 2   AFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPVNFAALNSMLLMKPTGFQPKHFNGVRLR 61

Query: 63  NLSFVENTASLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQERLEQKA 122
           N SFVENT S  VKAASEIDATGETDS+E +P+AEAKKEDVPVDKLPLESKLQERLEQKA
Sbjct: 62  NPSFVENTVSFTVKAASEIDATGETDSNEPKPSAEAKKEDVPVDKLPLESKLQERLEQKA 121

Query: 123 RMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Sbjct: 122 RMKLAKKIRLRRKRLVRKRHLRKKGRWPPSKMKKLKNV 159

[Close]
BLAST of PI0009984 vs. TAIR 10
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5 )

HSP 1 Score: 84.3 bits (207), Expect = 9.0e-17
Identity = 74/152 (48.68%), Postives = 89/152 (58.55%), Query Frame = 0 

Query: 5   LLCSNPLSTSFHFSTSPSPSCFPATSSIPSSMLLMKPIGFQPKRFNGVGLRNLSFVENTA 64
           LLC N L +    S+S S S    + S  S +L +KP   + K  N V L   S   +  
Sbjct: 3   LLCFNSLPSLSSLSSS-SSSRLLQSPSFASPVLSLKPNAVESK--NRVSLSAYSLNSSHG 62

Query: 65  SLVVKAASEIDATGETDSSEVQPAAEAKKEDVPVDKLPLESKLQER---LEQKARMKLAK 124
            +VVKAA+      E +S E      A    VPVDKLPLESK  +    LE + +MKLAK
Sbjct: 63  RIVVKAAASGVDGAEPESKEEPKTVVAA---VPVDKLPLESKEAKEKLLLELRLKMKLAK 122

Query: 125 KIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV 154
           KIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Sbjct: 123 KIRLRRKRLVRKRKMRKKGRWPPSKMKKNKNV 148

The following BLAST results are available for this feature:
BLAST of PI0009984 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LER71.3e-1548.6850S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSRP5 ... [more]
P276841.1e-1458.2450S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=PSR... [more]
P118917.0e-1442.8650S ribosomal protein 5, chloroplastic OS=Pisum sativum OX=3888 GN=PSRP5 PE=2 SV... [more]
BLAST of PI0009984 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3F43.7e-6694.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G419580 PE=4 SV=1[more]
A0A1S3C2X02.1e-6191.5050S ribosomal protein 5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495861 P... [more]
A0A6J1DNT92.4e-5783.3350S ribosomal protein 5, chloroplastic OS=Momordica charantia OX=3673 GN=LOC1110... [more]
A0A6J1HS418.4e-5581.4150S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita maxima OX=3661 GN... [more]
A0A6J1GE621.1e-5481.0150S ribosomal protein 5 alpha, chloroplastic-like OS=Cucurbita moschata OX=3662 ... [more]
BLAST of PI0009984 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004144312.17.6e-6694.7750S ribosomal protein 5 alpha, chloroplastic [Cucumis sativus] >KGN54666.1 hypot... [more]
XP_008455762.14.3e-6191.50PREDICTED: 50S ribosomal protein 5, chloroplastic [Cucumis melo][more]
XP_038881132.13.4e-5886.7150S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S r... [more]
XP_022154476.14.9e-5783.3350S ribosomal protein 5, chloroplastic [Momordica charantia][more]
XP_023543496.11.0e-5481.0150S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of PI0009984 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G56910.19.0e-1748.68plastid-specific 50S ribosomal protein 5 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..153
NoneNo IPR availablePANTHERPTHR34678:SF150S RIBOSOMAL PROTEIN 5, CHLOROPLASTICcoord: 5..153
IPR04030750S ribosomal protein 5, chloroplasticPANTHERPTHR3467850S RIBOSOMAL PROTEIN 5, CHLOROPLASTICcoord: 5..153

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0009984.2PI0009984.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
cellular_component GO:0009536 plastid
cellular_component GO:0005840 ribosome