PI0009863 (gene) Melon (PI 482460) v1

Overview


Name	PI0009863
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Poly(A)-specific ribonuclease
Location	chr12: 22021746 .. 22022199 (-)
RNA-Seq Expression	PI0009863
Synteny	PI0009863

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTACAGAGATTTCCGATTCAACATTAACCAAACCAAATTGATTCAATTGGGTTTAACGGCCTCCAATGACTCTGGCCGAATAGGCAGTTCATGGGAGTTCAATTTCTCAGATTTTGACCCACAAACTGACCCTCAAAACCCTTCGTCCGTTTCTTTTCTTGAGCAGAACGGCCTTGATTTTAACAAACTGAGAAATATGGTATACCTATCAATTCATTCACCGAAAATTTCTTAAGCATCATACGAAAACACAACATTTTCAGATGGGTTACCTTCCACGGGCTGTACGATATTGGGTAAAAGCAATGGGAATAATGGAGGTGTTGCCGGAATCAATGGCAGAATTTGCTTCCGTCGTGGTGAGGAGACTGGGGATTGTGAGAGATTTAAAACATATGGCTCGATTTTGTAAAGGGTTCGACGAGGGGAAGCTTGGGCTTGAAAAATAG

mRNA sequence

ATGCTTTACAGAGATTTCCGATTCAACATTAACCAAACCAAATTGATTCAATTGGGTTTAACGGCCTCCAATGACTCTGGCCGAATAGGCAGTTCATGGGAGTTCAATTTCTCAGATTTTGACCCACAAACTGACCCTCAAAACCCTTCGTCCGTTTCTTTTCTTGAGCAGAACGGCCTTGATTTTAACAAACTGAGAAATATGCATCATACGAAAACACAACATTTTCAGATGGGTTACCTTCCACGGGCTGTACGATATTGGGTAAAAGCAATGGGAATAATGGAGGTGTTGCCGGAATCAATGGCAGAATTTGCTTCCGTCGTGGTGAGGAGACTGGGGATTGTGAGAGATTTAAAACATATGGCTCGATTTTGTAAAGGGTTCGACGAGGGGAAGCTTGGGCTTGAAAAATAG

Coding sequence (CDS)

ATGCTTTACAGAGATTTCCGATTCAACATTAACCAAACCAAATTGATTCAATTGGGTTTAACGGCCTCCAATGACTCTGGCCGAATAGGCAGTTCATGGGAGTTCAATTTCTCAGATTTTGACCCACAAACTGACCCTCAAAACCCTTCGTCCGTTTCTTTTCTTGAGCAGAACGGCCTTGATTTTAACAAACTGAGAAATATGCATCATACGAAAACACAACATTTTCAGATGGGTTACCTTCCACGGGCTGTACGATATTGGGTAAAAGCAATGGGAATAATGGAGGTGTTGCCGGAATCAATGGCAGAATTTGCTTCCGTCGTGGTGAGGAGACTGGGGATTGTGAGAGATTTAAAACATATGGCTCGATTTTGTAAAGGGTTCGACGAGGGGAAGCTTGGGCTTGAAAAATAG

Protein sequence

MLYRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLDFNKLRNMHHTKTQHFQMGYLPRAVRYWVKAMGIMEVLPESMAEFASVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK

Homology

[Close]

BLAST of PI0009863 vs. ExPASy Swiss-Prot
Match: Q9SHJ0 (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.9e-16
Identity = 57/155 (36.77%), Postives = 76/155 (49.03%), Query Frame = 0


Query: 3   YRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLDF 62
           YR  + N+  TKLIQ G T  N  G IG  WE NFS+F   +D +N  S+ FL ++GLD 
Sbjct: 57  YRAMKGNVENTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDL 116

Query: 63  NKLRNMHHTKTQHFQMGYLPRAVRY--------WVKAMGIMEV-----------LPESMA 122
            K+R+        F  G+ P+ +          +V   G  +            LPE+  
Sbjct: 117 QKIRD---EGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHG 176

Query: 123 EFASVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
           EFA+ VV+  G V D K MA FC+G  E  LGL K
Sbjct: 177 EFATEVVKVFGQVYDTKVMAGFCEGLGE-HLGLSK 207

[Close]

BLAST of PI0009863 vs. ExPASy Swiss-Prot
Match: Q9LXM4 (Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=CAF1-8 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.9e-16
Identity = 59/150 (39.33%), Postives = 77/150 (51.33%), Query Frame = 0


Query: 3   YRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLDF 62
           Y D  F++++ KLIQLGLT  + +GRIG +WE NFSDF    D +N  S+ FL +NGLD 
Sbjct: 37  YMDMSFSVDRAKLIQLGLTLFDINGRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDL 96

Query: 63  NKLR----NMHHTKTQHFQMGYLPRAVRYWVKAMGIM-----------EVLPESMAEFAS 122
            K+R     +    ++ F M    R    WV   G             E LP +   F+ 
Sbjct: 97  RKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSK 156

Query: 123 VVVRRLGIVRDLKHMARFCKGFDEGKLGLE 138
            V R LG V DLK MA  C+G    +LGLE
Sbjct: 157 AVARVLGSVYDLKVMAGRCEGL-SSRLGLE 184

[Close]

BLAST of PI0009863 vs. ExPASy Swiss-Prot
Match: O64773 (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 5.9e-12
Identity = 55/156 (35.26%), Postives = 76/156 (48.72%), Query Frame = 0


Query: 3   YRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLDF 62
           YRD +FN++ T LIQLGLT       I  +WE N SDF+     +N  S++FL+ NGLD 
Sbjct: 50  YRDMKFNVDNTHLIQLGLTLFGKG--ITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDL 109

Query: 63  NKLR-----------------NMHHTKTQ--HFQMGYLPRAVRYWVKAMGIMEVLPESMA 122
           +K+R                 N  H K +   FQ  Y      Y +K +   + LPE+  
Sbjct: 110 DKIREEGIGIEEFFMEFSQILNEKHGKMRWVTFQGSY---DKAYLLKGL-TRKPLPETSK 169

Query: 123 EFASVVVRRLG-IVRDLKHMARFCKGFDEGKLGLEK 139
           EF   V + LG  V D+K MA  C G    + GL++
Sbjct: 170 EFDETVQQLLGRFVYDVKKMAGLCSGL-SSRFGLQR 198

[Close]

BLAST of PI0009863 vs. ExPASy Swiss-Prot
Match: Q9SAI2 (Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CAF1-6 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.8e-08
Identity = 44/160 (27.50%), Postives = 68/160 (42.50%), Query Frame = 0


Query: 3   YRDFRFNINQTKLIQLGLTASNDSGRIGSS-------WEFNFSDFDPQTDPQNPSSVSFL 62
           Y   + N+N  K+IQLGLT SN+ G + +        W+FNF +FD  +D     S+  L
Sbjct: 62  YETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELL 121

Query: 63  EQNGLDFNK---------------------LRNMHHTKTQH--FQMGYLPRAVRYWVKAM 122
           +Q+G+D  K                     L    H  T H  +  GYL + +       
Sbjct: 122 KQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLL------- 181

Query: 123 GIMEVLPESMAEFASVVVRRLGIVRDLKHMARFCKGFDEG 133
              + LP+S  +F  ++      V D+KH+ +FC     G
Sbjct: 182 -TCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGG 213

[Close]

BLAST of PI0009863 vs. ExPASy Swiss-Prot
Match: Q9SKZ2 (Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-08
Identity = 44/161 (27.33%), Postives = 68/161 (42.24%), Query Frame = 0


Query: 3   YRDFRFNINQTKLIQLGLTASNDSGRIGSS--------WEFNFSDFDPQTDPQNPSSVSF 62
           Y   + N+N  K+IQLGLT S++ G + +         W+FNF +FD ++D     S+  
Sbjct: 62  YETLKTNVNILKMIQLGLTFSDEKGNLPTCGTDNKYCIWQFNFREFDLESDIYATDSIEL 121

Query: 63  LEQNGLDFNK---------------------LRNMHHTKTQH--FQMGYLPRAVRYWVKA 122
           L Q+G+DF K                     L    H  T H  +  GYL + +      
Sbjct: 122 LRQSGIDFVKNNEFGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLL------ 181

Query: 123 MGIMEVLPESMAEFASVVVRRLGIVRDLKHMARFCKGFDEG 133
               + LPE+   F  ++      V D+KH+ +FC     G
Sbjct: 182 --TCQNLPETQTGFFEMISVYFPRVYDIKHLMKFCNSLHGG 214

[Close]

BLAST of PI0009863 vs. ExPASy TrEMBL
Match: A0A5A7TRG1 (Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G001200 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 9.4e-37
Identity = 82/153 (53.59%), Postives = 108/153 (70.59%), Query Frame = 0


Query: 2   LYRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLD 61
           +Y++FRFN+NQ KLIQLG+TASND G+IG SWEFNFSDFD Q D  +PS++ FLE+NGLD
Sbjct: 64  IYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKNGLD 123

Query: 62  FNKLRNMHHTKTQHFQMGYLP----------------RAVRYWVKAMGIMEVLPESMAEF 121
           F KL+  +      F   +LP                  + Y +KAMG++ VLP+SM EF
Sbjct: 124 FKKLKK-YGIPIASFTKKFLPIIQKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEEF 183

Query: 122 ASVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
           A++VV  +GIVRDLKHMARFC+G ++G+LGLE+
Sbjct: 184 ATLVVNEVGIVRDLKHMARFCEGLEDGRLGLER 215

[Close]

BLAST of PI0009863 vs. ExPASy TrEMBL
Match: A0A6J1CXP9 (Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015407 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.6e-36
Identity = 87/152 (57.24%), Postives = 108/152 (71.05%), Query Frame = 0


Query: 2   LYRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLD 61
           LY DFRFN+N+TKLIQLGLTAS++ G IGS+WEFNFSDFDPQ D  N SSVSFL+QNGLD
Sbjct: 63  LYDDFRFNVNRTKLIQLGLTASDEIGNIGSTWEFNFSDFDPQIDTHNASSVSFLKQNGLD 122

Query: 62  FNKLRN----MHHTKTQHFQMGYLPRAVR-----------YWVKAMGIMEVLPESMAEFA 121
           F+KL+     ++   ++ F +    R VR           Y +KAMG+   +PESM EFA
Sbjct: 123 FDKLKEFGIPINEFTSKAFFLFRKHRIVRWVTFHGLYDIGYLLKAMGVAGEIPESMEEFA 182

Query: 122 SVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
            +V R LG V DLKHMA+FC+G ++GKLGLEK
Sbjct: 183 ELVERALGNVSDLKHMAQFCEGLEDGKLGLEK 214

[Close]

BLAST of PI0009863 vs. ExPASy TrEMBL
Match: A0A6J1G7L2 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451625 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.0e-35
Identity = 83/152 (54.61%), Postives = 105/152 (69.08%), Query Frame = 0


Query: 2   LYRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLD 61
           +Y D RFN+NQTKLIQLGLTAS++SG++  SWEFNFSDFD Q D QNPSS++FLEQNGLD
Sbjct: 63  VYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSIAFLEQNGLD 122

Query: 62  FNKLRNMH---HTKTQHFQMGYLPRAVRYW------------VKAMGIMEVLPESMAEFA 121
           F KL+         T +F        VR W            VKAMG+ E LPESM EFA
Sbjct: 123 FAKLKKQGIPLSLFTLNFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEEFA 182

Query: 122 SVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
            +V R +G+VRDLK +AR+C+G ++G++GLE+
Sbjct: 183 EMVARGVGVVRDLKEVARWCEGLEQGRVGLER 214

[Close]

BLAST of PI0009863 vs. ExPASy TrEMBL
Match: A0A6J1G7T4 (Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.4e-35
Identity = 81/153 (52.94%), Postives = 105/153 (68.63%), Query Frame = 0


Query: 2   LYRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLD 61
           LY DFRFN+NQTK+IQLG+T S++SG IG +WEFNFSDFDP+ D  NP+S+ FL+QNGLD
Sbjct: 62  LYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLD 121

Query: 62  FNKLRNMHHTKTQHFQMGYL----PRAVRYWVK------------AMGIMEVLPESMAEF 121
           F KL+     K + F + +L      A+  WV             AMG+++ LPE++ EF
Sbjct: 122 FGKLKK-DGIKVRKFAIRFLYTLGKHAIYRWVTFHGLYDIGYLMLAMGVVKSLPETLGEF 181

Query: 122 ASVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
             +V RR+G VRDLKHMARFC+G + G LGLEK
Sbjct: 182 KWIVARRVGTVRDLKHMARFCEGLEGGNLGLEK 213

[Close]

BLAST of PI0009863 vs. ExPASy TrEMBL
Match: A0A6J1I6H7 (Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469633 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.8e-35
Identity = 79/153 (51.63%), Postives = 105/153 (68.63%), Query Frame = 0


Query: 2   LYRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLD 61
           LY DFRFN+NQTK+IQLG+T S++SG IG +WEFNFSDFDP+ D  NP+S+ FL+QNGLD
Sbjct: 62  LYADFRFNVNQTKVIQLGVTVSDESGNIGGTWEFNFSDFDPEIDAHNPASICFLKQNGLD 121

Query: 62  FNKLRNMHHTKTQHFQMGYL----PRAVRYWVK------------AMGIMEVLPESMAEF 121
           F KL+     K + F + +L      A+  W+             A+G+++ LPE++ EF
Sbjct: 122 FGKLKK-DGIKVRKFAIRFLYTMRKHAIHQWITFHGLYDIGYLILALGVVKSLPETLGEF 181

Query: 122 ASVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
             +V RR+G VRDLKHMARFC+G + G LGLEK
Sbjct: 182 EWIVARRVGTVRDLKHMARFCEGLEGGNLGLEK 213

[Close]

BLAST of PI0009863 vs. NCBI nr
Match: XP_038895744.1 (putative CCR4-associated factor 1 homolog 8 [Benincasa hispida])

HSP 1 Score: 186.8 bits (473), Expect = 1.2e-43
Identity = 99/159 (62.26%), Postives = 115/159 (72.33%), Query Frame = 0


Query: 2   LYRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLD 61
           LY DFRFN+NQTKLIQLGLTA +DSG+IG SWEFNFSDFDP+ D Q+PSS SFLEQNGLD
Sbjct: 58  LYEDFRFNVNQTKLIQLGLTACDDSGKIGGSWEFNFSDFDPEIDAQSPSSASFLEQNGLD 117

Query: 62  FNKLR------NMHHTKTQH----------------FQMGYLPRAVRYWVKAMGIMEVLP 121
           FNKL+      N+   K  H                + +GYL       +KAMGI EVLP
Sbjct: 118 FNKLKKYGIPINLFTAKFVHIIRKHNVFRWVTFHGLYDIGYL-------IKAMGITEVLP 177

Query: 122 ESMAEFASVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
           E+M EFA+VVVRRLGIVRDLKHMARFC+G ++GKLGLE+
Sbjct: 178 ETMEEFATVVVRRLGIVRDLKHMARFCEGLEDGKLGLER 209

[Close]

BLAST of PI0009863 vs. NCBI nr
Match: KAA0045730.1 (putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa] >TYJ99550.1 putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 1.9e-36
Identity = 82/153 (53.59%), Postives = 108/153 (70.59%), Query Frame = 0


Query: 2   LYRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLD 61
           +Y++FRFN+NQ KLIQLG+TASND G+IG SWEFNFSDFD Q D  +PS++ FLE+NGLD
Sbjct: 64  IYKNFRFNVNQMKLIQLGITASNDFGQIGGSWEFNFSDFDFQVDSHSPSAIPFLEKNGLD 123

Query: 62  FNKLRNMHHTKTQHFQMGYLP----------------RAVRYWVKAMGIMEVLPESMAEF 121
           F KL+  +      F   +LP                  + Y +KAMG++ VLP+SM EF
Sbjct: 124 FKKLKK-YGIPIASFTKKFLPIIQKRDIFRWVTFHGLYDIGYLIKAMGLITVLPKSMEEF 183

Query: 122 ASVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
           A++VV  +GIVRDLKHMARFC+G ++G+LGLE+
Sbjct: 184 ATLVVNEVGIVRDLKHMARFCEGLEDGRLGLER 215

[Close]

BLAST of PI0009863 vs. NCBI nr
Match: XP_022146113.1 (putative CCR4-associated factor 1 homolog 8 [Momordica charantia])

HSP 1 Score: 162.2 bits (409), Expect = 3.3e-36
Identity = 87/152 (57.24%), Postives = 108/152 (71.05%), Query Frame = 0


Query: 2   LYRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLD 61
           LY DFRFN+N+TKLIQLGLTAS++ G IGS+WEFNFSDFDPQ D  N SSVSFL+QNGLD
Sbjct: 63  LYDDFRFNVNRTKLIQLGLTASDEIGNIGSTWEFNFSDFDPQIDTHNASSVSFLKQNGLD 122

Query: 62  FNKLRN----MHHTKTQHFQMGYLPRAVR-----------YWVKAMGIMEVLPESMAEFA 121
           F+KL+     ++   ++ F +    R VR           Y +KAMG+   +PESM EFA
Sbjct: 123 FDKLKEFGIPINEFTSKAFFLFRKHRIVRWVTFHGLYDIGYLLKAMGVAGEIPESMEEFA 182

Query: 122 SVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
            +V R LG V DLKHMA+FC+G ++GKLGLEK
Sbjct: 183 ELVERALGNVSDLKHMAQFCEGLEDGKLGLEK 214

[Close]

BLAST of PI0009863 vs. NCBI nr
Match: XP_023533171.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 161.0 bits (406), Expect = 7.3e-36
Identity = 82/152 (53.95%), Postives = 107/152 (70.39%), Query Frame = 0


Query: 2   LYRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLD 61
           +Y D RFN+NQTKLIQLGLTAS++SG++  SWEFNFSDFD Q D QNPSS+SFLEQNGLD
Sbjct: 63  VYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSISFLEQNGLD 122

Query: 62  FNKL---------------RNMHHTKTQHFQMGYLPRAVRYWVKAMGIMEVLPESMAEFA 121
           F KL               R +  ++ + +   +    + Y VKAMG+ E LPESM EFA
Sbjct: 123 FAKLKKQGIPLSLFTLKFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEEFA 182

Query: 122 SVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
            +V R +G+VRDLK +AR+C+G ++GK+GLE+
Sbjct: 183 EMVARGVGVVRDLKEVARWCEGLEQGKVGLER 214

[Close]

BLAST of PI0009863 vs. NCBI nr
Match: XP_022947867.1 (putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata])

HSP 1 Score: 159.5 bits (402), Expect = 2.1e-35
Identity = 83/152 (54.61%), Postives = 105/152 (69.08%), Query Frame = 0


Query: 2   LYRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLD 61
           +Y D RFN+NQTKLIQLGLTAS++SG++  SWEFNFSDFD Q D QNPSS++FLEQNGLD
Sbjct: 63  VYEDLRFNVNQTKLIQLGLTASDESGQVAGSWEFNFSDFDHQIDTQNPSSIAFLEQNGLD 122

Query: 62  FNKLRNMH---HTKTQHFQMGYLPRAVRYW------------VKAMGIMEVLPESMAEFA 121
           F KL+         T +F        VR W            VKAMG+ E LPESM EFA
Sbjct: 123 FAKLKKQGIPLSLFTLNFSRIIRRSRVRKWVTFHGLYDIGYLVKAMGVAEELPESMEEFA 182

Query: 122 SVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
            +V R +G+VRDLK +AR+C+G ++G++GLE+
Sbjct: 183 EMVARGVGVVRDLKEVARWCEGLEQGRVGLER 214

[Close]

BLAST of PI0009863 vs. TAIR 10
Match: AT1G06450.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-17
Identity = 57/155 (36.77%), Postives = 76/155 (49.03%), Query Frame = 0


Query: 3   YRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLDF 62
           YR  + N+  TKLIQ G T  N  G IG  WE NFS+F   +D +N  S+ FL ++GLD 
Sbjct: 57  YRAMKGNVENTKLIQCGFTLFNAKGEIGGVWEINFSNFGDPSDTRNELSIEFLRRHGLDL 116

Query: 63  NKLRNMHHTKTQHFQMGYLPRAVRY--------WVKAMGIMEV-----------LPESMA 122
            K+R+        F  G+ P+ +          +V   G  +            LPE+  
Sbjct: 117 QKIRD---EGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHG 176

Query: 123 EFASVVVRRLGIVRDLKHMARFCKGFDEGKLGLEK 139
           EFA+ VV+  G V D K MA FC+G  E  LGL K
Sbjct: 177 EFATEVVKVFGQVYDTKVMAGFCEGLGE-HLGLSK 207

[Close]

BLAST of PI0009863 vs. TAIR 10
Match: AT3G44240.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 2.8e-17
Identity = 59/150 (39.33%), Postives = 77/150 (51.33%), Query Frame = 0


Query: 3   YRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLDF 62
           Y D  F++++ KLIQLGLT  + +GRIG +WE NFSDF    D +N  S+ FL +NGLD 
Sbjct: 37  YMDMSFSVDRAKLIQLGLTLFDINGRIGGTWEINFSDFGVD-DARNEKSIEFLRRNGLDL 96

Query: 63  NKLR----NMHHTKTQHFQMGYLPRAVRYWVKAMGIM-----------EVLPESMAEFAS 122
            K+R     +    ++ F M    R    WV   G             E LP +   F+ 
Sbjct: 97  RKIREEGIRIEGFFSEMFWMLKKTRRNITWVTFHGSYDIAYLLKGFTGEALPVTSERFSK 156

Query: 123 VVVRRLGIVRDLKHMARFCKGFDEGKLGLE 138
            V R LG V DLK MA  C+G    +LGLE
Sbjct: 157 AVARVLGSVYDLKVMAGRCEGL-SSRLGLE 184

[Close]

BLAST of PI0009863 vs. TAIR 10
Match: AT1G61470.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 4.2e-13
Identity = 55/156 (35.26%), Postives = 76/156 (48.72%), Query Frame = 0


Query: 3   YRDFRFNINQTKLIQLGLTASNDSGRIGSSWEFNFSDFDPQTDPQNPSSVSFLEQNGLDF 62
           YRD +FN++ T LIQLGLT       I  +WE N SDF+     +N  S++FL+ NGLD 
Sbjct: 50  YRDMKFNVDNTHLIQLGLTLFGKG--ITKTWEINLSDFNESKSLKNDKSIAFLKNNGLDL 109

Query: 63  NKLR-----------------NMHHTKTQ--HFQMGYLPRAVRYWVKAMGIMEVLPESMA 122
           +K+R                 N  H K +   FQ  Y      Y +K +   + LPE+  
Sbjct: 110 DKIREEGIGIEEFFMEFSQILNEKHGKMRWVTFQGSY---DKAYLLKGL-TRKPLPETSK 169

Query: 123 EFASVVVRRLG-IVRDLKHMARFCKGFDEGKLGLEK 139
           EF   V + LG  V D+K MA  C G    + GL++
Sbjct: 170 EFDETVQQLLGRFVYDVKKMAGLCSGL-SSRFGLQR 198

[Close]

BLAST of PI0009863 vs. TAIR 10
Match: AT1G80780.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09
Identity = 44/160 (27.50%), Postives = 68/160 (42.50%), Query Frame = 0


Query: 3   YRDFRFNINQTKLIQLGLTASNDSGRIGSS-------WEFNFSDFDPQTDPQNPSSVSFL 62
           Y   + N+N  K+IQLGLT SN+ G + +        W+FNF +FD  +D     S+  L
Sbjct: 62  YETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELL 121

Query: 63  EQNGLDFNK---------------------LRNMHHTKTQH--FQMGYLPRAVRYWVKAM 122
           +Q+G+D  K                     L    H  T H  +  GYL + +       
Sbjct: 122 KQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLL------- 181

Query: 123 GIMEVLPESMAEFASVVVRRLGIVRDLKHMARFCKGFDEG 133
              + LP+S  +F  ++      V D+KH+ +FC     G
Sbjct: 182 -TCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGG 213

[Close]

BLAST of PI0009863 vs. TAIR 10
Match: AT1G80780.2 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09
Identity = 44/160 (27.50%), Postives = 68/160 (42.50%), Query Frame = 0


Query: 3   YRDFRFNINQTKLIQLGLTASNDSGRIGSS-------WEFNFSDFDPQTDPQNPSSVSFL 62
           Y   + N+N  K+IQLGLT SN+ G + +        W+FNF +FD  +D     S+  L
Sbjct: 62  YETLKTNVNILKMIQLGLTFSNEQGNLPTCGTDKYCIWQFNFREFDLDSDIFALDSIELL 121

Query: 63  EQNGLDFNK---------------------LRNMHHTKTQH--FQMGYLPRAVRYWVKAM 122
           +Q+G+D  K                     L    H  T H  +  GYL + +       
Sbjct: 122 KQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLKLL------- 181

Query: 123 GIMEVLPESMAEFASVVVRRLGIVRDLKHMARFCKGFDEG 133
              + LP+S  +F  ++      V D+KH+ +FC     G
Sbjct: 182 -TCQNLPDSQTDFFKLINVYFPTVYDIKHLMKFCNSLHGG 213

The following BLAST results are available for this feature:

BLAST of PI0009863 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHJ0	3.9e-16	36.77	Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9LXM4	3.9e-16	39.33	Putative CCR4-associated factor 1 homolog 8 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
O64773	5.9e-12	35.26	Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SAI2	1.8e-08	27.50	Probable CCR4-associated factor 1 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]
Q9SKZ2	2.3e-08	27.33	Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=C...	[more]

BLAST of PI0009863 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRG1	9.4e-37	53.59	Poly(A)-specific ribonuclease OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1CXP9	1.6e-36	57.24	Poly(A)-specific ribonuclease OS=Momordica charantia OX=3673 GN=LOC111015407 PE=...	[more]
A0A6J1G7L2	1.0e-35	54.61	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451625 PE=3...	[more]
A0A6J1G7T4	1.4e-35	52.94	Poly(A)-specific ribonuclease OS=Cucurbita moschata OX=3662 GN=LOC111451626 PE=3...	[more]
A0A6J1I6H7	1.8e-35	51.63	Poly(A)-specific ribonuclease OS=Cucurbita maxima OX=3661 GN=LOC111469633 PE=3 S...	[more]

BLAST of PI0009863 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895744.1	1.2e-43	62.26	putative CCR4-associated factor 1 homolog 8 [Benincasa hispida]	[more]
KAA0045730.1	1.9e-36	53.59	putative CCR4-associated factor 1-like protein 8 [Cucumis melo var. makuwa] >TYJ...	[more]
XP_022146113.1	3.3e-36	57.24	putative CCR4-associated factor 1 homolog 8 [Momordica charantia]	[more]
XP_023533171.1	7.3e-36	53.95	putative CCR4-associated factor 1 homolog 8 [Cucurbita pepo subsp. pepo]	[more]
XP_022947867.1	2.1e-35	54.61	putative CCR4-associated factor 1 homolog 8 [Cucurbita moschata]	[more]

BLAST of PI0009863 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06450.1	2.8e-17	36.77	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G44240.1	2.8e-17	39.33	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G61470.1	4.2e-13	35.26	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.1	1.3e-09	27.50	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT1G80780.2	1.3e-09	27.50	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..138 e-value: 1.2E-21 score: 78.8
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 86..138
IPR039637	CCR4-NOT transcription complex subunit 7/8/Pop2	PANTHER	PTHR10797	CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT	coord: 2..77
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 86..138
None	No IPR available	PANTHER	PTHR10797:SF57	CCR4-ASSOCIATED FACTOR 1 HOMOLOG 3-RELATED	coord: 2..77
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..136

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009863.1	PI0009863.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0030014	CCR4-NOT complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity