Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGCCTCCTGCCTCTCCTTTGTCAAAATTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACAAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTACTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGCCCGATAAAAACGATGCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAATCCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAACCTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTGGTTTAGAGTTGTTTGGTATTCTAGCAGAAACCATTCATGGTTTATTTCTTTCTGCCAGAACGCCTACAAGATAAATTTTCCACTATGGTTTATTCAATGGTGGAATAATTTTGGTCTCACAGACGACATATTGCCAACACCCATTCAAGAGTCATATTTTTATTTCACAAGAACAATCCAGAAAAATTCATTTCACAATTCAATGAGATTCTGTCTCTACTTTCAAATTCCATGGATATTTTGCTGGAGTTTCAACACAGCTTCATATCCACAATACAAGATGTTAGTCAAAAATCTCAAAATTAAATGGTGGGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCCGAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCGTCCATACAGGAAGATGACGAATTGACAAGTCCGGAATACGATCTAAATGATCCGAATATTAGACTGTCACAAGTATGTGAAACATGTTTTTCTTTCATTCATTGTGTTTAG
mRNA sequence
ATGAGGCCTCCTGCCTCTCCTTTGTCAAAATTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACAAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTACTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGCCCGATAAAAACGATGCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAATCCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAACCTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTGGTTTAGAGTTGTTTGGTATTCTAGCAGAAACCATTCATGGTTTATTTCTTTCTGCCAGAACGCCTACAAGATAAATTTTCCACTATGGTTTATTCAATGGTGGAATAATTTTGGTCTCACAGACGACATATTGCCAACACCCATTCAAGAGTCATATTTTTATTTCACAAGAACAATCCAGAAAAATTCATTTCACAATTCAATGAGATTCTGTCTCTACTTTCAAATTCCATGGATATTTTGCTGGAGTTTCAACACAGCTTCATATCCACAATACAAGATGTTAGTCAAAAATCTCAAAATTAAATGGTGGGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCCGAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCGTCCATACAGGAAGATGACGAATTGACAAGTCCGGAATACGATCTAAATGATCCGAATATTAGACTGTCACAAGTATGTGAAACATGTTTTTCTTTCATTCATTGTGTTTAG
Coding sequence (CDS)
ATGAGGCCTCCTGCCTCTCCTTTGTCAAAATTGGAGTCATCAACTCCACCCACAACATACTCTCAGGCCGTTGCACAAGAAAAACGGTTCATACCAAGGCCCGAGATCAAAACTTACTTTCAAAAGCAAGTGGTAATCTATGATCCTATCATAGAACCAGAATATCAAAGTCTCACTATCGATGAGACAGTTTCAAAAATTTTCCCTGAGGGCTTTAATTTCCTTCCTGAAGACCTCAGAAAAACAAGGAAATTTTACGAGTTTATTCTAGTAGACACAAAGTCTGTAGAAATAACTCACGTGCCCGATAAAAACGATGCTTCAAAAATCGCTTATTCAAAATTAAAAATTTTCAAAGCGATAAATCCAACCCATTGGAACCAAGGAATTTTTACAGAAAAATCCTTTTCAAAACCTTTCGTACCTCAATCCTACTCTTACCAGGATTACATCAAAGCTTGGTTTAGAGTTGTTTGGTATTCTAGCAGAAACCATTCATGGTTTATTTCTTTCTGCCAGAACGCCTACAAGATAAATTTTCCACTATGGTTTATTCAATGGTGGAATAATTTTGGTCTCACAGACGACATATTGCCAACACCCATTCAAGAGTCATATTTTTATTTCACAAGAACAATCCAGAAAAATTCATTTCACAATTCAATGAGATTCTGTCTCTACTTTCAAATTCCATGGATATTTTGCTGGAGTTTCAACACAGCTTCATATCCACAATACAAGATGTTAGTCAAAAATCTCAAAATTAAATGGTGGGATAAATACAATTTCCAGCATGCCACCATCAAACATATGAAAGAGTGGTTCGCAGAGAACGGCTATCTTCAAGATATCGATCAGAAAAAGAACGCAGAGTTCCCGAACGATAAATCAAAACTTTTAGCAGCACTGGCACAGGCAACAACTGATGCCGATTTTCAAAGATTACTATCAACGGCAGTAAATGCCTCTACAAGCTCAAAATCAGCGTCTTCGTCCATACAGGAAGATGACGAATTGACAAGTCCGGAATACGATCTAAATGATCCGAATATTAGACTGTCACAAGTATGTGAAACATGTTTTTCTTTCATTCATTGTGTTTAG
Protein sequence
MRPPASPLSKLESSTPPTTYSQAVAQEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRNHSWFISFCQNAYKINFPLWFIQWWNNFGLTDDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFPNDKSKLLAALAQATTDADFQRLLSTAVNASTSSKSASSSIQEDDELTSPEYDLNDPNIRLSQVCETCFSFIHCV
Homology
BLAST of PI0009861 vs. ExPASy TrEMBL
Match:
A0A5A7SR64 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE=4 SV=1)
HSP 1 Score: 330.9 bits (847), Expect = 6.9e-87
Identity = 164/360 (45.56%), Postives = 232/360 (64.44%), Query Frame = 0
Query: 1 MRPPASPLSKLESSTP--PTTYSQAVAQEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSL 60
MR + S S+ P P++YSQ + + K F PRP I YF K ++ D IEPE+
Sbjct: 55 MRAASPDASSSRSAIPRNPSSYSQ-IVRPKIFQPRPPINGYFTKTTIV-DLTIEPEFDGP 114
Query: 61 TIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIF 120
++ E S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF
Sbjct: 115 SVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIF 174
Query: 121 KAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRNHSWFISFCQNAYKI 180
+ + P++W QG+F + FS PF P SY+Y+DY KAW+ V W + NHSWF++FC+ AYK+
Sbjct: 175 RVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKM 234
Query: 181 NFPLWFIQWWNNFGLTDDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSF 240
+FP WF WW FGL+++I P IQ SY F ++I + + RF LYFQIPWIFCW+F
Sbjct: 235 HFPNWFQNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNF 294
Query: 241 NTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFPNDKSK 300
+K L K+L IKWW+K+N+ H + +K+WF N +LQD+ ++++ F K+
Sbjct: 295 QLGPSGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNA 354
Query: 301 LLAALAQATTDADFQRLLSTAV------NASTSSKSASSSIQEDDELTSPEY---DLNDP 350
+++ LA A+T +F +++ V N ++ +S+ + D+L Y D+NDP
Sbjct: 355 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYVGLDINDP 412
BLAST of PI0009861 vs. ExPASy TrEMBL
Match:
A0A5D3DW87 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 PE=4 SV=1)
HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 164/360 (45.56%), Postives = 232/360 (64.44%), Query Frame = 0
Query: 1 MRPPASPLSKLESSTP--PTTYSQAVAQEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSL 60
MR + S S+ P P++YSQ + + K F PRP I YF K ++ D IEPE+
Sbjct: 55 MRAASPDASSSRSAIPRNPSSYSQ-IVRPKIFQPRPPINGYFTKTTMV-DLTIEPEFDGP 114
Query: 61 TIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIF 120
++ E S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF
Sbjct: 115 SVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIF 174
Query: 121 KAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRNHSWFISFCQNAYKI 180
+ + P++W QG+F + FS PF P SY+Y+DY KAW+ V W + NHSWF++FC+ AYK+
Sbjct: 175 RVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKM 234
Query: 181 NFPLWFIQWWNNFGLTDDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSF 240
+FP WF WW FGL+++I P IQ SY F ++I + + RF LYFQIPWIFCW+F
Sbjct: 235 HFPNWFQNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNF 294
Query: 241 NTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFPNDKSK 300
+K L K+L IKWW+K+N+ H + +K+WF N +LQD+ ++++ F K+
Sbjct: 295 QLGPSGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNA 354
Query: 301 LLAALAQATTDADFQRLLSTAV------NASTSSKSASSSIQEDDELTSPEY---DLNDP 350
+++ LA A+T +F +++ V N ++ +S+ + D+L Y D+NDP
Sbjct: 355 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYEGLDINDP 412
BLAST of PI0009861 vs. ExPASy TrEMBL
Match:
A0A5A7V6D1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00540 PE=4 SV=1)
HSP 1 Score: 328.6 bits (841), Expect = 3.4e-86
Identity = 160/355 (45.07%), Postives = 228/355 (64.23%), Query Frame = 0
Query: 4 PASPLSKLESSTPPTTYSQAVAQEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDET 63
PA+ S+ P++YSQ + + K F PRP I YF K ++ D IEPE+ ++ E
Sbjct: 60 PAASSSRSAIPRNPSSYSQ-IVRPKIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQEV 119
Query: 64 VSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINP 123
S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF+ + P
Sbjct: 120 CSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTP 179
Query: 124 THWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRNHSWFISFCQNAYKINFPLW 183
++W QG+F + FS PF P SY+Y+DY KAW+ V W + NHSWF++FC+ AYK++FP W
Sbjct: 180 SYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNW 239
Query: 184 FIQWWNNFGLTDDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASY 243
F WW FGL+++I P +Q SY F ++I + + RF LYFQIPWIFCW+F
Sbjct: 240 FQNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPS 299
Query: 244 PQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFPNDKSKLLAAL 303
+K L K+L+IKWW+K+N+ H + +K+WF N +LQD+ ++++ F K+ +++ L
Sbjct: 300 GNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL 359
Query: 304 AQATTDADFQRLLSTAV------NASTSSKSASSSIQEDDELTSPEY---DLNDP 350
A A+T +F +++ V N + +S+ D+ Y D+NDP
Sbjct: 360 AGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNADDFDYDPYEGLDINDP 412
BLAST of PI0009861 vs. ExPASy TrEMBL
Match:
A0A5A7UVN1 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00580 PE=4 SV=1)
HSP 1 Score: 328.2 bits (840), Expect = 4.5e-86
Identity = 160/355 (45.07%), Postives = 228/355 (64.23%), Query Frame = 0
Query: 4 PASPLSKLESSTPPTTYSQAVAQEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDET 63
PA+ S+ P++YSQ + + K F PRP I YF K ++ D IEPE+ ++ E
Sbjct: 60 PAASSSRSAIPRNPSSYSQ-IVRPKIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQEV 119
Query: 64 VSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINP 123
S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF+ + P
Sbjct: 120 CSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTP 179
Query: 124 THWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRNHSWFISFCQNAYKINFPLW 183
++W QG+F + FS PF P SY+Y+DY KAW+ V W + NHSWF++FC+ AYK++FP W
Sbjct: 180 SYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNW 239
Query: 184 FIQWWNNFGLTDDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASY 243
F WW FGL+++I P +Q SY F ++I + + RF LYFQIPWIFCW+F
Sbjct: 240 FQNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPS 299
Query: 244 PQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFPNDKSKLLAAL 303
+K L K+L+IKWW+K+N+ H + +K+WF N +LQD+ ++++ F K+ +++ L
Sbjct: 300 GNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL 359
Query: 304 AQATTDADFQRLLSTAV------NASTSSKSASSSIQEDDELTSPEY---DLNDP 350
A A+T +F +++ V N + +S+ D+ Y D+NDP
Sbjct: 360 AGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDFDYDPYEGLDINDP 412
BLAST of PI0009861 vs. ExPASy TrEMBL
Match:
A0A5A7SS94 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003480 PE=4 SV=1)
HSP 1 Score: 328.2 bits (840), Expect = 4.5e-86
Identity = 163/360 (45.28%), Postives = 231/360 (64.17%), Query Frame = 0
Query: 1 MRPPASPLSKLESSTP--PTTYSQAVAQEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSL 60
MR + S S+ P P++YSQ + + K F PRP I YF ++ D IEPE+
Sbjct: 55 MRAASPDASSSRSAIPRNPSSYSQ-IVRPKIFQPRPPINGYFTNTTMV-DLTIEPEFDGP 114
Query: 61 TIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIF 120
++ E S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF
Sbjct: 115 SVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIF 174
Query: 121 KAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRNHSWFISFCQNAYKI 180
+ + P++W QG+F + FS PF P SY+Y+DY KAW+ V W + NHSWF++FC+ AYK+
Sbjct: 175 RVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKM 234
Query: 181 NFPLWFIQWWNNFGLTDDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSF 240
+FP WF WW FGL+++I P IQ SY F ++I + + RF LYFQIPWIFCW+F
Sbjct: 235 HFPNWFQNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNF 294
Query: 241 NTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFPNDKSK 300
+K L K+L+IKWW+K+N+ H + +K+WF N +LQD+ +++ F K+
Sbjct: 295 QLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTTQEDEAFLLTKNA 354
Query: 301 LLAALAQATTDADFQRLLSTAV------NASTSSKSASSSIQEDDELTSPEY---DLNDP 350
+++ LA A+T +F +++ V N ++ +S+ + D+L Y D+NDP
Sbjct: 355 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASLASVNDVDDLDYDPYEGLDINDP 412
BLAST of PI0009861 vs. NCBI nr
Match:
KAA0032923.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 330.9 bits (847), Expect = 1.4e-86
Identity = 164/360 (45.56%), Postives = 232/360 (64.44%), Query Frame = 0
Query: 1 MRPPASPLSKLESSTP--PTTYSQAVAQEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSL 60
MR + S S+ P P++YSQ + + K F PRP I YF K ++ D IEPE+
Sbjct: 55 MRAASPDASSSRSAIPRNPSSYSQ-IVRPKIFQPRPPINGYFTKTTIV-DLTIEPEFDGP 114
Query: 61 TIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIF 120
++ E S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF
Sbjct: 115 SVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIF 174
Query: 121 KAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRNHSWFISFCQNAYKI 180
+ + P++W QG+F + FS PF P SY+Y+DY KAW+ V W + NHSWF++FC+ AYK+
Sbjct: 175 RVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKM 234
Query: 181 NFPLWFIQWWNNFGLTDDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSF 240
+FP WF WW FGL+++I P IQ SY F ++I + + RF LYFQIPWIFCW+F
Sbjct: 235 HFPNWFQNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNF 294
Query: 241 NTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFPNDKSK 300
+K L K+L IKWW+K+N+ H + +K+WF N +LQD+ ++++ F K+
Sbjct: 295 QLGPSGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNA 354
Query: 301 LLAALAQATTDADFQRLLSTAV------NASTSSKSASSSIQEDDELTSPEY---DLNDP 350
+++ LA A+T +F +++ V N ++ +S+ + D+L Y D+NDP
Sbjct: 355 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYVGLDINDP 412
BLAST of PI0009861 vs. NCBI nr
Match:
TYK28077.1 (polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 330.1 bits (845), Expect = 2.4e-86
Identity = 164/360 (45.56%), Postives = 232/360 (64.44%), Query Frame = 0
Query: 1 MRPPASPLSKLESSTP--PTTYSQAVAQEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSL 60
MR + S S+ P P++YSQ + + K F PRP I YF K ++ D IEPE+
Sbjct: 55 MRAASPDASSSRSAIPRNPSSYSQ-IVRPKIFQPRPPINGYFTKTTMV-DLTIEPEFDGP 114
Query: 61 TIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIF 120
++ E S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF
Sbjct: 115 SVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIF 174
Query: 121 KAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRNHSWFISFCQNAYKI 180
+ + P++W QG+F + FS PF P SY+Y+DY KAW+ V W + NHSWF++FC+ AYK+
Sbjct: 175 RVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKM 234
Query: 181 NFPLWFIQWWNNFGLTDDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSF 240
+FP WF WW FGL+++I P IQ SY F ++I + + RF LYFQIPWIFCW+F
Sbjct: 235 HFPNWFQNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNF 294
Query: 241 NTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFPNDKSK 300
+K L K+L IKWW+K+N+ H + +K+WF N +LQD+ ++++ F K+
Sbjct: 295 QLGPSGNFKALSKSLMIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNA 354
Query: 301 LLAALAQATTDADFQRLLSTAV------NASTSSKSASSSIQEDDELTSPEY---DLNDP 350
+++ LA A+T +F +++ V N ++ +S+ + D+L Y D+NDP
Sbjct: 355 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASPASVNDVDDLDYDPYEGLDINDP 412
BLAST of PI0009861 vs. NCBI nr
Match:
KAA0063832.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 328.6 bits (841), Expect = 7.1e-86
Identity = 160/355 (45.07%), Postives = 228/355 (64.23%), Query Frame = 0
Query: 4 PASPLSKLESSTPPTTYSQAVAQEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDET 63
PA+ S+ P++YSQ + + K F PRP I YF K ++ D IEPE+ ++ E
Sbjct: 60 PAASSSRSAIPRNPSSYSQ-IVRPKIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQEV 119
Query: 64 VSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINP 123
S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF+ + P
Sbjct: 120 CSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTP 179
Query: 124 THWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRNHSWFISFCQNAYKINFPLW 183
++W QG+F + FS PF P SY+Y+DY KAW+ V W + NHSWF++FC+ AYK++FP W
Sbjct: 180 SYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNW 239
Query: 184 FIQWWNNFGLTDDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASY 243
F WW FGL+++I P +Q SY F ++I + + RF LYFQIPWIFCW+F
Sbjct: 240 FQNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPS 299
Query: 244 PQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFPNDKSKLLAAL 303
+K L K+L+IKWW+K+N+ H + +K+WF N +LQD+ ++++ F K+ +++ L
Sbjct: 300 GNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL 359
Query: 304 AQATTDADFQRLLSTAV------NASTSSKSASSSIQEDDELTSPEY---DLNDP 350
A A+T +F +++ V N + +S+ D+ Y D+NDP
Sbjct: 360 AGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNADDFDYDPYEGLDINDP 412
BLAST of PI0009861 vs. NCBI nr
Match:
KAA0032916.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK28084.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 328.2 bits (840), Expect = 9.2e-86
Identity = 163/360 (45.28%), Postives = 231/360 (64.17%), Query Frame = 0
Query: 1 MRPPASPLSKLESSTP--PTTYSQAVAQEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSL 60
MR + S S+ P P++YSQ + + K F PRP I YF ++ D IEPE+
Sbjct: 55 MRAASPDASSSRSAIPRNPSSYSQ-IVRPKIFQPRPPINGYFTNTTMV-DLTIEPEFDGP 114
Query: 61 TIDETVSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIF 120
++ E S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF
Sbjct: 115 SVQEVCSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIF 174
Query: 121 KAINPTHWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRNHSWFISFCQNAYKI 180
+ + P++W QG+F + FS PF P SY+Y+DY KAW+ V W + NHSWF++FC+ AYK+
Sbjct: 175 RVLTPSYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLHAYNHSWFVTFCKQAYKM 234
Query: 181 NFPLWFIQWWNNFGLTDDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSF 240
+FP WF WW FGL+++I P IQ SY F ++I + + RF LYFQIPWIFCW+F
Sbjct: 235 HFPNWFQNWWMYFGLSEEIFPVEIQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNF 294
Query: 241 NTASYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFPNDKSK 300
+K L K+L+IKWW+K+N+ H + +K+WF N +LQD+ +++ F K+
Sbjct: 295 QLGPSGNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTTQEDEAFLLTKNA 354
Query: 301 LLAALAQATTDADFQRLLSTAV------NASTSSKSASSSIQEDDELTSPEY---DLNDP 350
+++ LA A+T +F +++ V N ++ +S+ + D+L Y D+NDP
Sbjct: 355 VMSTLAGASTQQEFNSVVNNVVVNLSDDNDDLPEDASLASVNDVDDLDYDPYEGLDINDP 412
BLAST of PI0009861 vs. NCBI nr
Match:
KAA0056777.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYJ97600.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21092.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])
HSP 1 Score: 328.2 bits (840), Expect = 9.2e-86
Identity = 160/355 (45.07%), Postives = 228/355 (64.23%), Query Frame = 0
Query: 4 PASPLSKLESSTPPTTYSQAVAQEKRFIPRPEIKTYFQKQVVIYDPIIEPEYQSLTIDET 63
PA+ S+ P++YSQ + + K F PRP I YF K ++ D IEPE+ ++ E
Sbjct: 60 PAASSSRSAIPRNPSSYSQ-IVRPKIFQPRPPINGYFTKTTMV-DLTIEPEFDGPSVQEV 119
Query: 64 VSKIFPEGFNFLPEDLRKTRKFYEFILVDTKSVEITHVPDKNDASKIAYSKLKIFKAINP 123
S+IFP GFNFLPEDL KTR FYE+ILVD+KS EITHVPDKND SKI YSKL+IF+ + P
Sbjct: 120 CSQIFPHGFNFLPEDLSKTRTFYEYILVDSKSAEITHVPDKNDPSKIIYSKLRIFRVLTP 179
Query: 124 THWNQGIFTEKSFSKPFVPQSYSYQDYIKAWFRVVWYSSRNHSWFISFCQNAYKINFPLW 183
++W QG+F + FS PF P SY+Y+DY KAW+ V W + NHSWF++FC+ AYK++FP W
Sbjct: 180 SYWKQGMFVGRKFSHPFKPPSYNYRDYTKAWYIVFWLQAYNHSWFVTFCKQAYKMHFPNW 239
Query: 184 FIQWWNNFGLTDDILPTPIQESYFYFTRTIQKNSFHNSMRFCLYFQIPWIFCWSFNTASY 243
F WW FGL+++I P +Q SY F ++I + + RF LYFQIPWIFCW+F
Sbjct: 240 FQNWWMYFGLSEEIFPVEVQRSYHLFQQSIYSSPLSKTFRFALYFQIPWIFCWNFQLGPS 299
Query: 244 PQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQKKNAEFPNDKSKLLAAL 303
+K L K+L+IKWW+K+N+ H + +K+WF N +LQD+ ++++ F K+ +++ L
Sbjct: 300 GNFKALSKSLRIKWWEKFNYSHLEVNKIKDWFKANIHLQDMTRQEDEAFLLTKNAVMSTL 359
Query: 304 AQATTDADFQRLLSTAV------NASTSSKSASSSIQEDDELTSPEY---DLNDP 350
A A+T +F +++ V N + +S+ D+ Y D+NDP
Sbjct: 360 AGASTQQEFNSVVNNVVVNLSDDNDDLPEDVSPASVNNVDDFDYDPYEGLDINDP 412
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7SR64 | 6.9e-87 | 45.56 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G001720 PE... | [more] |
A0A5D3DW87 | 1.2e-86 | 45.56 | Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003410 P... | [more] |
A0A5A7V6D1 | 3.4e-86 | 45.07 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... | [more] |
A0A5A7UVN1 | 4.5e-86 | 45.07 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
A0A5A7SS94 | 4.5e-86 | 45.28 | Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... | [more] |
Match Name | E-value | Identity | Description | |
KAA0032923.1 | 1.4e-86 | 45.56 | polyprotein [Cucumis melo var. makuwa] | [more] |
TYK28077.1 | 2.4e-86 | 45.56 | polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0063832.1 | 7.1e-86 | 45.07 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] | [more] |
KAA0032916.1 | 9.2e-86 | 45.28 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK28084.1 Retrotransp... | [more] |
KAA0056777.1 | 9.2e-86 | 45.07 | Retrotransposable element Tf2 [Cucumis melo var. makuwa] >KAA0059218.1 Retrotran... | [more] |
Match Name | E-value | Identity | Description | |