Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAACAAGGTTCCGTTCTCACAAAAAAAAGTTGGGAACAACTGATGGAATCTCTTAAAGGCGGGATCATCATCAGAGAGAATCATTTGTTCGACAACTCTACTCTTGCTTCTGATCTATCAGAGAAAGAATCTCAACTTGAAGTAGTGCCTGTCATGATGGCAAATGTAACAACTGAGGCAGCCATGGTAGAGATGGAAAGGAAAATAAATTTCCTAATGAAAGCTGTCGAGGAGCGAGATCATGAAATCGCTGCCTTGAAAGATTATATGAAGGCCCATGAAACTGCTGAGTCGAGCCAAACTCCTGTTGTTAAAGCTTATGATAAAGGAAAAGCTACGTTGCAGGAAAACCAGACGCAACAGTCCATCTTCGTTGCCTTCCTATCAGTCCAACAGCTACAGGATATTGATAACTTGTAG
mRNA sequence
ATGGAAGAACAAGGTTCCGTTCTCACAAAAAAAAGTTGGGAACAACTGATGGAATCTCTTAAAGGCGGGATCATCATCAGAGAGAATCATTTGTTCGACAACTCTACTCTTGCTTCTGATCTATCAGAGAAAGAATCTCAACTTGAAGTAGTGCCTGTCATGATGGCAAATGTAACAACTGAGGCAGCCATGGTAGAGATGGAAAGGAAAATAAATTTCCTAATGAAAGCTGTCGAGGAGCGAGATCATGAAATCGCTGCCTTGAAAGATTATATGAAGGCCCATGAAACTGCTGAGTCGAGCCAAACTCCTGTTGTTAAAGCTTATGATAAAGGAAAAGCTACGTTGCAGGAAAACCAGACGCAACAGTCCATCTTCGTTGCCTTCCTATCAGTCCAACAGCTACAGGATATTGATAACTTGTAG
Coding sequence (CDS)
ATGGAAGAACAAGGTTCCGTTCTCACAAAAAAAAGTTGGGAACAACTGATGGAATCTCTTAAAGGCGGGATCATCATCAGAGAGAATCATTTGTTCGACAACTCTACTCTTGCTTCTGATCTATCAGAGAAAGAATCTCAACTTGAAGTAGTGCCTGTCATGATGGCAAATGTAACAACTGAGGCAGCCATGGTAGAGATGGAAAGGAAAATAAATTTCCTAATGAAAGCTGTCGAGGAGCGAGATCATGAAATCGCTGCCTTGAAAGATTATATGAAGGCCCATGAAACTGCTGAGTCGAGCCAAACTCCTGTTGTTAAAGCTTATGATAAAGGAAAAGCTACGTTGCAGGAAAACCAGACGCAACAGTCCATCTTCGTTGCCTTCCTATCAGTCCAACAGCTACAGGATATTGATAACTTGTAG
Protein sequence
MEEQGSVLTKKSWEQLMESLKGGIIIRENHLFDNSTLASDLSEKESQLEVVPVMMANVTTEAAMVEMERKINFLMKAVEERDHEIAALKDYMKAHETAESSQTPVVKAYDKGKATLQENQTQQSIFVAFLSVQQLQDIDNL
Homology
BLAST of PI0009804 vs. ExPASy TrEMBL
Match:
A0A5D3BEV5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00310 PE=4 SV=1)
HSP 1 Score: 184.1 bits (466), Expect = 4.0e-43
Identity = 103/137 (75.18%), Postives = 117/137 (85.40%), Query Frame = 0
Query: 2 EEQGSVLTKKSWEQLMESLKGGIIIRENHLFDNSTLASDLSEKESQLEVVPVMMANVTTE 61
+EQGSVL KKS EQL+ES KGGIIIREN LF+NST AS+L +KES L+VV VMM ++TTE
Sbjct: 4 QEQGSVLKKKSLEQLIESSKGGIIIRENPLFNNSTPASNLLDKESHLKVVSVMMTDMTTE 63
Query: 62 AAMVEMERKINFLMKAVEERDHEIAALKDYMKAHETAESSQTPVVKAYDKGKATLQENQT 121
A MVE+ERKINFLMK VEERDHEIAALKD MKA ETAESS+T +KA DKGK LQENQT
Sbjct: 64 ATMVEIERKINFLMKVVEERDHEIAALKDQMKACETAESSKTSAIKAKDKGKVVLQENQT 123
Query: 122 QQSIFVAFLSVQQLQDI 139
QQS+ +A LSVQQLQD+
Sbjct: 124 QQSMSIASLSVQQLQDM 140
BLAST of PI0009804 vs. ExPASy TrEMBL
Match:
A0A5D3DK07 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00460 PE=4 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 105/138 (76.09%), Postives = 116/138 (84.06%), Query Frame = 0
Query: 2 EEQGSVLTKKSWEQLMESLKGGIIIRENHLFDNSTLASDLSEKESQLEVVPVMMANVTTE 61
+EQG VL KKS EQL+ES KGGIII +N LF+NST AS+LS+KES LEVV VMM +VT E
Sbjct: 33 QEQGFVLKKKSLEQLIESPKGGIIIEDNPLFNNSTHASNLSDKESHLEVVSVMMVDVTAE 92
Query: 62 AAMVEMERKINFLMKAVEERDHEIAALKDYMKAHETAESSQTPVVKAYDKGKATLQENQ- 121
A M EMERKINFLMK VEERDHEIAALKD MKA+ETAESSQTPVVKA DKGK +QENQ
Sbjct: 93 ATMAEMERKINFLMKVVEERDHEIAALKDQMKAYETAESSQTPVVKATDKGKNVVQENQP 152
Query: 122 TQQSIFVAFLSVQQLQDI 139
QQS+ VA LSVQQLQD+
Sbjct: 153 QQQSVSVASLSVQQLQDM 170
BLAST of PI0009804 vs. ExPASy TrEMBL
Match:
A0A5D3DIN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00020 PE=4 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 106/138 (76.81%), Postives = 118/138 (85.51%), Query Frame = 0
Query: 2 EEQGSVLTKKSWEQLMESLKGGIIIRENHLFDNSTLASDLSEKESQLEVVPVMMANVTTE 61
+EQG VL KKS EQL+ES KG IIIR+N LF+NST AS+LS+KES LEVV VMM +VTTE
Sbjct: 33 QEQGFVLKKKSLEQLIESPKGRIIIRDNPLFNNSTPASNLSDKESHLEVVSVMMVDVTTE 92
Query: 62 AAMVEMERKINFLMKAVEERDHEIAALKDYMKAHETAESSQTPVVKAYDKGKATLQENQ- 121
A MVEME+KINFLMK VEERDHEIAALKD MKA+ETAESS+TPVVKA DKGK +QENQ
Sbjct: 93 ATMVEMEKKINFLMKVVEERDHEIAALKDQMKAYETAESSKTPVVKATDKGKNVVQENQP 152
Query: 122 TQQSIFVAFLSVQQLQDI 139
QQSI VA LSVQQLQD+
Sbjct: 153 QQQSISVASLSVQQLQDM 170
BLAST of PI0009804 vs. ExPASy TrEMBL
Match:
A0A5A7TC87 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold262G00670 PE=4 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 1.5e-42
Identity = 106/138 (76.81%), Postives = 118/138 (85.51%), Query Frame = 0
Query: 2 EEQGSVLTKKSWEQLMESLKGGIIIRENHLFDNSTLASDLSEKESQLEVVPVMMANVTTE 61
+EQG VL KKS EQL+ES KG IIIR+N LF+NST AS+LS+KES LEVV VMM +VTTE
Sbjct: 33 QEQGFVLKKKSLEQLIESPKGRIIIRDNPLFNNSTPASNLSDKESHLEVVSVMMVDVTTE 92
Query: 62 AAMVEMERKINFLMKAVEERDHEIAALKDYMKAHETAESSQTPVVKAYDKGKATLQENQ- 121
A MVEME+KINFLMK VEERDHEIAALKD MKA+ETAESS+TPVVKA DKGK +QENQ
Sbjct: 93 ATMVEMEKKINFLMKVVEERDHEIAALKDQMKAYETAESSKTPVVKATDKGKNVVQENQP 152
Query: 122 TQQSIFVAFLSVQQLQDI 139
QQSI VA LSVQQLQD+
Sbjct: 153 QQQSISVASLSVQQLQDM 170
BLAST of PI0009804 vs. ExPASy TrEMBL
Match:
A0A5A7VH30 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold979G00700 PE=4 SV=1)
HSP 1 Score: 181.4 bits (459), Expect = 2.6e-42
Identity = 101/134 (75.37%), Postives = 114/134 (85.07%), Query Frame = 0
Query: 2 EEQGSVLTKKSWEQLMESLKGGIIIRENHLFDNSTLASDLSEKESQLEVVPVMMANVTTE 61
+EQGSVL KKS EQL+ES KGGIII++N LF+NST AS+LS+KES LEVV VMMA+VT E
Sbjct: 33 QEQGSVLKKKSLEQLIESPKGGIIIKDNPLFNNSTSASNLSDKESHLEVVSVMMADVTAE 92
Query: 62 AAMVEMERKINFLMKAVEERDHEIAALKDYMKAHETAESSQTPVVKAYDKGKATLQENQT 121
A M EMERKIN+LMK +EERDHEIAALKD +KA ETAESS+TP VKA DKGK LQENQT
Sbjct: 93 ATMAEMERKINYLMKVIEERDHEIAALKDQIKACETAESSKTPAVKANDKGKVVLQENQT 152
Query: 122 QQSIFVAFLSVQQL 136
QQS+ V LSVQQL
Sbjct: 153 QQSMSVTSLSVQQL 166
BLAST of PI0009804 vs. NCBI nr
Match:
TYJ96985.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 184.1 bits (466), Expect = 8.3e-43
Identity = 103/137 (75.18%), Postives = 117/137 (85.40%), Query Frame = 0
Query: 2 EEQGSVLTKKSWEQLMESLKGGIIIRENHLFDNSTLASDLSEKESQLEVVPVMMANVTTE 61
+EQGSVL KKS EQL+ES KGGIIIREN LF+NST AS+L +KES L+VV VMM ++TTE
Sbjct: 4 QEQGSVLKKKSLEQLIESSKGGIIIRENPLFNNSTPASNLLDKESHLKVVSVMMTDMTTE 63
Query: 62 AAMVEMERKINFLMKAVEERDHEIAALKDYMKAHETAESSQTPVVKAYDKGKATLQENQT 121
A MVE+ERKINFLMK VEERDHEIAALKD MKA ETAESS+T +KA DKGK LQENQT
Sbjct: 64 ATMVEIERKINFLMKVVEERDHEIAALKDQMKACETAESSKTSAIKAKDKGKVVLQENQT 123
Query: 122 QQSIFVAFLSVQQLQDI 139
QQS+ +A LSVQQLQD+
Sbjct: 124 QQSMSIASLSVQQLQDM 140
BLAST of PI0009804 vs. NCBI nr
Match:
KAA0040518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 182.2 bits (461), Expect = 3.1e-42
Identity = 106/138 (76.81%), Postives = 118/138 (85.51%), Query Frame = 0
Query: 2 EEQGSVLTKKSWEQLMESLKGGIIIRENHLFDNSTLASDLSEKESQLEVVPVMMANVTTE 61
+EQG VL KKS EQL+ES KG IIIR+N LF+NST AS+LS+KES LEVV VMM +VTTE
Sbjct: 33 QEQGFVLKKKSLEQLIESPKGRIIIRDNPLFNNSTPASNLSDKESHLEVVSVMMVDVTTE 92
Query: 62 AAMVEMERKINFLMKAVEERDHEIAALKDYMKAHETAESSQTPVVKAYDKGKATLQENQ- 121
A MVEME+KINFLMK VEERDHEIAALKD MKA+ETAESS+TPVVKA DKGK +QENQ
Sbjct: 93 ATMVEMEKKINFLMKVVEERDHEIAALKDQMKAYETAESSKTPVVKATDKGKNVVQENQP 152
Query: 122 TQQSIFVAFLSVQQLQDI 139
QQSI VA LSVQQLQD+
Sbjct: 153 QQQSISVASLSVQQLQDM 170
BLAST of PI0009804 vs. NCBI nr
Match:
TYK23445.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 182.2 bits (461), Expect = 3.1e-42
Identity = 106/138 (76.81%), Postives = 118/138 (85.51%), Query Frame = 0
Query: 2 EEQGSVLTKKSWEQLMESLKGGIIIRENHLFDNSTLASDLSEKESQLEVVPVMMANVTTE 61
+EQG VL KKS EQL+ES KG IIIR+N LF+NST AS+LS+KES LEVV VMM +VTTE
Sbjct: 33 QEQGFVLKKKSLEQLIESPKGRIIIRDNPLFNNSTPASNLSDKESHLEVVSVMMVDVTTE 92
Query: 62 AAMVEMERKINFLMKAVEERDHEIAALKDYMKAHETAESSQTPVVKAYDKGKATLQENQ- 121
A MVEME+KINFLMK VEERDHEIAALKD MKA+ETAESS+TPVVKA DKGK +QENQ
Sbjct: 93 ATMVEMEKKINFLMKVVEERDHEIAALKDQMKAYETAESSKTPVVKATDKGKNVVQENQP 152
Query: 122 TQQSIFVAFLSVQQLQDI 139
QQSI VA LSVQQLQD+
Sbjct: 153 QQQSISVASLSVQQLQDM 170
BLAST of PI0009804 vs. NCBI nr
Match:
TYK23838.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 182.2 bits (461), Expect = 3.1e-42
Identity = 105/138 (76.09%), Postives = 116/138 (84.06%), Query Frame = 0
Query: 2 EEQGSVLTKKSWEQLMESLKGGIIIRENHLFDNSTLASDLSEKESQLEVVPVMMANVTTE 61
+EQG VL KKS EQL+ES KGGIII +N LF+NST AS+LS+KES LEVV VMM +VT E
Sbjct: 33 QEQGFVLKKKSLEQLIESPKGGIIIEDNPLFNNSTHASNLSDKESHLEVVSVMMVDVTAE 92
Query: 62 AAMVEMERKINFLMKAVEERDHEIAALKDYMKAHETAESSQTPVVKAYDKGKATLQENQ- 121
A M EMERKINFLMK VEERDHEIAALKD MKA+ETAESSQTPVVKA DKGK +QENQ
Sbjct: 93 ATMAEMERKINFLMKVVEERDHEIAALKDQMKAYETAESSQTPVVKATDKGKNVVQENQP 152
Query: 122 TQQSIFVAFLSVQQLQDI 139
QQS+ VA LSVQQLQD+
Sbjct: 153 QQQSVSVASLSVQQLQDM 170
BLAST of PI0009804 vs. NCBI nr
Match:
KAA0066644.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 181.4 bits (459), Expect = 5.4e-42
Identity = 101/134 (75.37%), Postives = 114/134 (85.07%), Query Frame = 0
Query: 2 EEQGSVLTKKSWEQLMESLKGGIIIRENHLFDNSTLASDLSEKESQLEVVPVMMANVTTE 61
+EQGSVL KKS EQL+ES KGGIII++N LF+NST AS+LS+KES LEVV VMMA+VT E
Sbjct: 33 QEQGSVLKKKSLEQLIESPKGGIIIKDNPLFNNSTSASNLSDKESHLEVVSVMMADVTAE 92
Query: 62 AAMVEMERKINFLMKAVEERDHEIAALKDYMKAHETAESSQTPVVKAYDKGKATLQENQT 121
A M EMERKIN+LMK +EERDHEIAALKD +KA ETAESS+TP VKA DKGK LQENQT
Sbjct: 93 ATMAEMERKINYLMKVIEERDHEIAALKDQIKACETAESSKTPAVKANDKGKVVLQENQT 152
Query: 122 QQSIFVAFLSVQQL 136
QQS+ V LSVQQL
Sbjct: 153 QQSMSVTSLSVQQL 166
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3BEV5 | 4.0e-43 | 75.18 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3DK07 | 1.5e-42 | 76.09 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3DIN4 | 1.5e-42 | 76.81 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7TC87 | 1.5e-42 | 76.81 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| A0A5A7VH30 | 2.6e-42 | 75.37 | Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYJ96985.1 | 8.3e-43 | 75.18 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0040518.1 | 3.1e-42 | 76.81 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK23445.1 | 3.1e-42 | 76.81 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK23838.1 | 3.1e-42 | 76.09 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0066644.1 | 5.4e-42 | 75.37 | ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
