Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGTCGAACCTGCCTGCAGGATACGATGGATTTCCCGCGTATGATGGGAACGATATGGAGTTCCCACATGTACAGTCAAGGACTGGACATGTCACCTGACGACATAATGGGTACACGATCCGGTCGATTGTCTGAGGGTAGGATTGGTTCGAGTGGTTCGAAGAGGAAACGGGGAGGGCAGGCGTTGGAGGTGGCAAAAATTATTCGCAGTGCCATGAAATATGCTAATGACCAGTTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGGCAAGATGCAAGCGTGACACATGCGGAAGTCGTTAAACAACTGCAGGGAATCCCAGAGCTGAGTAGACTGGACAGGGTTCGTTGTATGCGTATAATGATGTGCAACGTGGATGACATGAAAGCATTTCTAGATATCCCGGACGAGCTTAAGTTGGATTACTACACGGTCATTCTCCAAGATAACGCTTGA
mRNA sequence
ATGGTGGGTCGAACCTGCCTGCAGGATACGATGGATTTCCCGCGTATGATGGGAACGATATGGAGTTCCCACATGTACAGTCAAGGACTGGACATGTCACCTGACGACATAATGGGTACACGATCCGGTCGATTGTCTGAGGGTAGGATTGGTTCGAGTGGTTCGAAGAGGAAACGGGGAGGGCAGGCGTTGGAGGTGGCAAAAATTATTCGCAGTGCCATGAAATATGCTAATGACCAGTTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGGCAAGATGCAAGCGTGACACATGCGGAAGTCGTTAAACAACTGCAGGGAATCCCAGAGCTGAGTAGACTGGACAGGGTTCGTTGTATGCGTATAATGATGTGCAACGTGGATGACATGAAAGCATTTCTAGATATCCCGGACGAGCTTAAGTTGGATTACTACACGGTCATTCTCCAAGATAACGCTTGA
Coding sequence (CDS)
ATGGTGGGTCGAACCTGCCTGCAGGATACGATGGATTTCCCGCGTATGATGGGAACGATATGGAGTTCCCACATGTACAGTCAAGGACTGGACATGTCACCTGACGACATAATGGGTACACGATCCGGTCGATTGTCTGAGGGTAGGATTGGTTCGAGTGGTTCGAAGAGGAAACGGGGAGGGCAGGCGTTGGAGGTGGCAAAAATTATTCGCAGTGCCATGAAATATGCTAATGACCAGTTGAAGGCCATTGCAGAATGGCCCAAAGAACAACGGCAAGATGCAAGCGTGACACATGCGGAAGTCGTTAAACAACTGCAGGGAATCCCAGAGCTGAGTAGACTGGACAGGGTTCGTTGTATGCGTATAATGATGTGCAACGTGGATGACATGAAAGCATTTCTAGATATCCCGGACGAGCTTAAGTTGGATTACTACACGGTCATTCTCCAAGATAACGCTTGA
Protein sequence
MVGRTCLQDTMDFPRMMGTIWSSHMYSQGLDMSPDDIMGTRSGRLSEGRIGSSGSKRKRGGQALEVAKIIRSAMKYANDQLKAIAEWPKEQRQDASVTHAEVVKQLQGIPELSRLDRVRCMRIMMCNVDDMKAFLDIPDELKLDYYTVILQDNA
Homology
BLAST of PI0009799 vs. ExPASy TrEMBL
Match:
A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)
HSP 1 Score: 180.3 bits (456), Expect = 6.3e-42
Identity = 93/130 (71.54%), Postives = 107/130 (82.31%), Query Frame = 0
Query: 25 MYSQGLDMSPDDIMGTRSGRLSEGRIGSSGSKRKRGGQALEVAKIIRSAMKYANDQLKAI 84
MYSQG+DM DDIMGTR R +EGR GSSGSKRK+GGQA+E +IIR+ M+++ND+LKAI
Sbjct: 35 MYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAI 94
Query: 85 AEWPKEQRQDASVTHAEVVKQLQGIPELSRLDRVRCMRIMMCNVDDMKAFLDIPDELKLD 144
EW QRQDAS EVV+QLQ IPELSR DRVR M+I+MCNVDDMKAFLDI DELKLD
Sbjct: 95 VEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILDELKLD 154
Query: 145 YYTVILQDNA 155
Y T+I QDNA
Sbjct: 155 YCTIIFQDNA 164
BLAST of PI0009799 vs. ExPASy TrEMBL
Match:
A0A5A7VBC5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1290G00070 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 2.1e-37
Identity = 82/129 (63.57%), Postives = 101/129 (78.29%), Query Frame = 0
Query: 25 MYSQGLDMSPDDIMGTRSGRLSEGRIGSSGSKRKRGGQALEVAKIIRSAMKYANDQLKAI 84
MYSQGL+MSPDD+MGTR+ R+SE R SSGSKRKR G A + I+R+A++Y N+QL I
Sbjct: 146 MYSQGLNMSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQLNRI 205
Query: 85 AEWPKEQRQDASVTHAEVVKQLQGIPELSRLDRVRCMRIMMCNVDDMKAFLDIPDELKLD 144
AEWP QRQ+AS T EVV+QL+ IPEL +DR R M I+MCNVDDMKAFLD+PD +K
Sbjct: 206 AEWPVLQRQNASQTRQEVVRQLEAIPELILMDRCRLMHILMCNVDDMKAFLDVPDNMKYS 265
Query: 145 YYTVILQDN 154
YY +ILQ+N
Sbjct: 266 YYNIILQEN 274
BLAST of PI0009799 vs. ExPASy TrEMBL
Match:
A0A5D3CIF5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00370 PE=4 SV=1)
HSP 1 Score: 163.7 bits (413), Expect = 6.1e-37
Identity = 81/129 (62.79%), Postives = 101/129 (78.29%), Query Frame = 0
Query: 25 MYSQGLDMSPDDIMGTRSGRLSEGRIGSSGSKRKRGGQALEVAKIIRSAMKYANDQLKAI 84
MYSQGL+MSPDD+MGTR+ R+SE R SSGSKRKR G A + I+R+A++Y N+QL I
Sbjct: 146 MYSQGLNMSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQLNRI 205
Query: 85 AEWPKEQRQDASVTHAEVVKQLQGIPELSRLDRVRCMRIMMCNVDDMKAFLDIPDELKLD 144
AEWP QRQ+AS T EVV++L+ IPEL +DR R M I+MCNVDDMKAFLD+PD +K
Sbjct: 206 AEWPVLQRQNASQTRQEVVRKLEAIPELILMDRCRLMHILMCNVDDMKAFLDVPDNMKYS 265
Query: 145 YYTVILQDN 154
YY +ILQ+N
Sbjct: 266 YYNIILQEN 274
BLAST of PI0009799 vs. ExPASy TrEMBL
Match:
A0A5A7U7R0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00810 PE=4 SV=1)
HSP 1 Score: 157.9 bits (398), Expect = 3.4e-35
Identity = 78/129 (60.47%), Postives = 100/129 (77.52%), Query Frame = 0
Query: 25 MYSQGLDMSPDDIMGTRSGRLSEGRIGSSGSKRKRGGQALEVAKIIRSAMKYANDQLKAI 84
MYSQGL+MSPDD+MGTR+ R+SE R SGSKRKR G A + I+R+A++Y N+Q+ I
Sbjct: 81 MYSQGLNMSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIEYGNEQVNRI 140
Query: 85 AEWPKEQRQDASVTHAEVVKQLQGIPELSRLDRVRCMRIMMCNVDDMKAFLDIPDELKLD 144
AEWP QRQDAS T E+V+QL+ IPEL+ +DR R M I+M NVDDMKAFL++PD +K
Sbjct: 141 AEWPVLQRQDASQTRQEIVRQLEAIPELTLIDRCRLMHILMRNVDDMKAFLEVPDNMKYS 200
Query: 145 YYTVILQDN 154
YY +ILQ+N
Sbjct: 201 YYNIILQEN 209
BLAST of PI0009799 vs. ExPASy TrEMBL
Match:
A0A5A7T4M9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G001900 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 78/129 (60.47%), Postives = 101/129 (78.29%), Query Frame = 0
Query: 25 MYSQGLDMSPDDIMGTRSGRLSEGRIGSSGSKRKRGGQALEVAKIIRSAMKYANDQLKAI 84
MYSQGL+MSPD+++GTR+ R++EGR SSGSK KRGGQA + + R+A++Y N+QL I
Sbjct: 71 MYSQGLNMSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRI 130
Query: 85 AEWPKEQRQDASVTHAEVVKQLQGIPELSRLDRVRCMRIMMCNVDDMKAFLDIPDELKLD 144
AEWP QRQDAS TH EVV+QL+ IP+L+ +DR M I+M NVDDMKAFLD+PD +K
Sbjct: 131 AEWPVLQRQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYS 190
Query: 145 YYTVILQDN 154
Y +ILQ+N
Sbjct: 191 YCNIILQEN 199
BLAST of PI0009799 vs. NCBI nr
Match:
KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 180.3 bits (456), Expect = 1.3e-41
Identity = 93/130 (71.54%), Postives = 107/130 (82.31%), Query Frame = 0
Query: 25 MYSQGLDMSPDDIMGTRSGRLSEGRIGSSGSKRKRGGQALEVAKIIRSAMKYANDQLKAI 84
MYSQG+DM DDIMGTR R +EGR GSSGSKRK+GGQA+E +IIR+ M+++ND+LKAI
Sbjct: 35 MYSQGIDMLSDDIMGTRPDRSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAI 94
Query: 85 AEWPKEQRQDASVTHAEVVKQLQGIPELSRLDRVRCMRIMMCNVDDMKAFLDIPDELKLD 144
EW QRQDAS EVV+QLQ IPELSR DRVR M+I+MCNVDDMKAFLDI DELKLD
Sbjct: 95 VEWLNVQRQDASARLVEVVRQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILDELKLD 154
Query: 145 YYTVILQDNA 155
Y T+I QDNA
Sbjct: 155 YCTIIFQDNA 164
BLAST of PI0009799 vs. NCBI nr
Match:
KAA0063726.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 165.2 bits (417), Expect = 4.3e-37
Identity = 82/129 (63.57%), Postives = 101/129 (78.29%), Query Frame = 0
Query: 25 MYSQGLDMSPDDIMGTRSGRLSEGRIGSSGSKRKRGGQALEVAKIIRSAMKYANDQLKAI 84
MYSQGL+MSPDD+MGTR+ R+SE R SSGSKRKR G A + I+R+A++Y N+QL I
Sbjct: 146 MYSQGLNMSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQLNRI 205
Query: 85 AEWPKEQRQDASVTHAEVVKQLQGIPELSRLDRVRCMRIMMCNVDDMKAFLDIPDELKLD 144
AEWP QRQ+AS T EVV+QL+ IPEL +DR R M I+MCNVDDMKAFLD+PD +K
Sbjct: 206 AEWPVLQRQNASQTRQEVVRQLEAIPELILMDRCRLMHILMCNVDDMKAFLDVPDNMKYS 265
Query: 145 YYTVILQDN 154
YY +ILQ+N
Sbjct: 266 YYNIILQEN 274
BLAST of PI0009799 vs. NCBI nr
Match:
TYK10954.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 163.7 bits (413), Expect = 1.3e-36
Identity = 81/129 (62.79%), Postives = 101/129 (78.29%), Query Frame = 0
Query: 25 MYSQGLDMSPDDIMGTRSGRLSEGRIGSSGSKRKRGGQALEVAKIIRSAMKYANDQLKAI 84
MYSQGL+MSPDD+MGTR+ R+SE R SSGSKRKR G A + I+R+A++Y N+QL I
Sbjct: 146 MYSQGLNMSPDDLMGTRTARVSERRNVSSGSKRKRAGHATDSGDIVRTAIEYRNEQLNRI 205
Query: 85 AEWPKEQRQDASVTHAEVVKQLQGIPELSRLDRVRCMRIMMCNVDDMKAFLDIPDELKLD 144
AEWP QRQ+AS T EVV++L+ IPEL +DR R M I+MCNVDDMKAFLD+PD +K
Sbjct: 206 AEWPVLQRQNASQTRQEVVRKLEAIPELILMDRCRLMHILMCNVDDMKAFLDVPDNMKYS 265
Query: 145 YYTVILQDN 154
YY +ILQ+N
Sbjct: 266 YYNIILQEN 274
BLAST of PI0009799 vs. NCBI nr
Match:
KAA0050216.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 157.9 bits (398), Expect = 6.9e-35
Identity = 78/129 (60.47%), Postives = 100/129 (77.52%), Query Frame = 0
Query: 25 MYSQGLDMSPDDIMGTRSGRLSEGRIGSSGSKRKRGGQALEVAKIIRSAMKYANDQLKAI 84
MYSQGL+MSPDD+MGTR+ R+SE R SGSKRKR G A + I+R+A++Y N+Q+ I
Sbjct: 81 MYSQGLNMSPDDLMGTRTARVSERRNVLSGSKRKRPGHATDSGDIVRTAIEYGNEQVNRI 140
Query: 85 AEWPKEQRQDASVTHAEVVKQLQGIPELSRLDRVRCMRIMMCNVDDMKAFLDIPDELKLD 144
AEWP QRQDAS T E+V+QL+ IPEL+ +DR R M I+M NVDDMKAFL++PD +K
Sbjct: 141 AEWPVLQRQDASQTRQEIVRQLEAIPELTLIDRCRLMHILMRNVDDMKAFLEVPDNMKYS 200
Query: 145 YYTVILQDN 154
YY +ILQ+N
Sbjct: 201 YYNIILQEN 209
BLAST of PI0009799 vs. NCBI nr
Match:
KAA0038320.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 155.6 bits (392), Expect = 3.4e-34
Identity = 78/129 (60.47%), Postives = 101/129 (78.29%), Query Frame = 0
Query: 25 MYSQGLDMSPDDIMGTRSGRLSEGRIGSSGSKRKRGGQALEVAKIIRSAMKYANDQLKAI 84
MYSQGL+MSPD+++GTR+ R++EGR SSGSK KRGGQA + + R+A++Y N+QL I
Sbjct: 71 MYSQGLNMSPDELIGTRTTRVNEGRYISSGSKWKRGGQAADSGDVFRTAIEYRNEQLNRI 130
Query: 85 AEWPKEQRQDASVTHAEVVKQLQGIPELSRLDRVRCMRIMMCNVDDMKAFLDIPDELKLD 144
AEWP QRQDAS TH EVV+QL+ IP+L+ +DR M I+M NVDDMKAFLD+PD +K
Sbjct: 131 AEWPVLQRQDASQTHQEVVRQLEVIPKLTLMDRCCLMHILMRNVDDMKAFLDVPDNMKYS 190
Query: 145 YYTVILQDN 154
Y +ILQ+N
Sbjct: 191 YCNIILQEN 199
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V469 | 6.3e-42 | 71.54 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7VBC5 | 2.1e-37 | 63.57 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3CIF5 | 6.1e-37 | 62.79 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U7R0 | 3.4e-35 | 60.47 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7T4M9 | 1.7e-34 | 60.47 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
KAA0060529.1 | 1.3e-41 | 71.54 | retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... | [more] |
KAA0063726.1 | 4.3e-37 | 63.57 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
TYK10954.1 | 1.3e-36 | 62.79 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0050216.1 | 6.9e-35 | 60.47 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ98192.1 retrotransposon p... | [more] |
KAA0038320.1 | 3.4e-34 | 60.47 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |