PI0009759 (gene) Melon (PI 482460) v1

Overview
NamePI0009759
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr05: 18523187 .. 18524003 (+)
RNA-Seq ExpressionPI0009759
SyntenyPI0009759
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGAAAATTTAAGGGACGGAAAAATAACGAACAGCGTAGATTTTTTACGTTTGAGGTATTCGTAGTGTAAATTTGAGATATGTCGTATGAAGATTCGTAGGGTTAGATTTATTGTTTTTTGAACAAGATTAGGACACTGTAAGCAAACAACAAAAGTACTTTCAAAACTGTTAATCTAGTTTCGAATATGTAGGCTTAGTTGCATTTTCGCGTACTTTTTCTAATTCACGTACCTTCTACTTATGATTGTTATTCAGTCATCCCAAAATGTGGAAGGCCGGTTTTTTTGGGTTCTGTCTAAGGGTCACAATACATGGACTAAGGCCACTGGCATACTTGCGCAGGTTCGTGGTCCACACACTGTAATGGATCGAAAAGCAATATCTGAGATTTTGACGGTGTTCACTGTGTCCCAACGTGAATTGCTAATGACGTTGGACATACTAATGAAGGACAGTAAGAGGTTACCACAAACTCTGTACGACATTAGACATAGGATTAGACAGCTAGCATATTTTCATTTGATCCATGAGTCGGATCTTGTCTGTCGGCGAAGTACCAGAATGGACAGACGAATGTTTGCCATTCTATGCCATTTTCTTAGGACAGTCGCTGGATTAGCCTCGACCGAAGTCGTGGACGTCGAGGAGATGGTGGTCAGGTTCATGCACATCTTAGCACACGATGTGAAGAACCGAGTGGTCCAGCGGGAATTTGTGTGGTCTGGTGAGACAATTTCAAGGCATTTCAACATGGTGTTGTTGGCCGCTGTACATCTGCATGACGAGCTGATAAAAAACCACAACCAATAA

mRNA sequence

ATGGGCGGAAAATTTAAGGGACGGAAAAATAACGAACAGCGTAGATTTTTTACGTTTGAGTCATCCCAAAATGTGGAAGGCCGGTTTTTTTGGGTTCTGTCTAAGGGTCACAATACATGGACTAAGGCCACTGGCATACTTGCGCAGGTTCGTGGTCCACACACTGTAATGGATCGAAAAGCAATATCTGAGATTTTGACGGTGTTCACTGTGTCCCAACGTGAATTGCTAATGACGTTGGACATACTAATGAAGGACAGTAAGAGGTTACCACAAACTCTGTACGACATTAGACATAGGATTAGACAGCTAGCATATTTTCATTTGATCCATGAGTCGGATCTTGTCTGTCGGCGAAGTACCAGAATGGACAGACGAATGTTTGCCATTCTATGCCATTTTCTTAGGACAGTCGCTGGATTAGCCTCGACCGAAGTCGTGGACGTCGAGGAGATGGTGGTCAGGTTCATGCACATCTTAGCACACGATGTGAAGAACCGAGTGGTCCAGCGGGAATTTGTGTGGTCTGGTGAGACAATTTCAAGGCATTTCAACATGGTGTTGTTGGCCGCTGTACATCTGCATGACGAGCTGATAAAAAACCACAACCAATAA

Coding sequence (CDS)

ATGGGCGGAAAATTTAAGGGACGGAAAAATAACGAACAGCGTAGATTTTTTACGTTTGAGTCATCCCAAAATGTGGAAGGCCGGTTTTTTTGGGTTCTGTCTAAGGGTCACAATACATGGACTAAGGCCACTGGCATACTTGCGCAGGTTCGTGGTCCACACACTGTAATGGATCGAAAAGCAATATCTGAGATTTTGACGGTGTTCACTGTGTCCCAACGTGAATTGCTAATGACGTTGGACATACTAATGAAGGACAGTAAGAGGTTACCACAAACTCTGTACGACATTAGACATAGGATTAGACAGCTAGCATATTTTCATTTGATCCATGAGTCGGATCTTGTCTGTCGGCGAAGTACCAGAATGGACAGACGAATGTTTGCCATTCTATGCCATTTTCTTAGGACAGTCGCTGGATTAGCCTCGACCGAAGTCGTGGACGTCGAGGAGATGGTGGTCAGGTTCATGCACATCTTAGCACACGATGTGAAGAACCGAGTGGTCCAGCGGGAATTTGTGTGGTCTGGTGAGACAATTTCAAGGCATTTCAACATGGTGTTGTTGGCCGCTGTACATCTGCATGACGAGCTGATAAAAAACCACAACCAATAA

Protein sequence

MGGKFKGRKNNEQRRFFTFESSQNVEGRFFWVLSKGHNTWTKATGILAQVRGPHTVMDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWSGETISRHFNMVLLAAVHLHDELIKNHNQ
Homology
[Close]
BLAST of PI0009759 vs. ExPASy TrEMBL
Match: A0A5A7TI78 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001100 PE=3 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.3e-50
Identity = 101/144 (70.14%), Postives = 123/144 (85.42%), Query Frame = 0 

Query: 57  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLV 116
           MD++ +   LT FT++QR++L+ L+ LM D+KRLPQT YD RHRIRQLAYF +IHESDLV
Sbjct: 1   MDQQTLLGALTAFTMAQRQMLLMLEALMNDNKRLPQTPYDTRHRIRQLAYFRMIHESDLV 60

Query: 117 CRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWS 176
           CR+STRMDRR F ILCH LRTV+GL+STE+VDVEEMV  F+H+LAHDVKNRV+QREFV S
Sbjct: 61  CRKSTRMDRRTFTILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120

Query: 177 GETISRHFNMVLLAAVHLHDELIK 201
           GET+SRHFN+VL   V L++ELIK
Sbjct: 121 GETVSRHFNIVLFDVVRLYEELIK 144

[Close]
BLAST of PI0009759 vs. ExPASy TrEMBL
Match: A0A5A7UUT3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold98G00380 PE=3 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 6.4e-50
Identity = 100/144 (69.44%), Postives = 124/144 (86.11%), Query Frame = 0 

Query: 57  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLV 116
           MD + +  +LT FT +QR++L+TL++LM ++KRLP T  D RHRIR+LAYF +IHESDLV
Sbjct: 1   MDEQTLIGVLTAFTSAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLV 60

Query: 117 CRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWS 176
           CR+STRMDRR FAILCH LR VAGL+STE+VDVEEMV  F+H+LAHDVKNRV+QREFV S
Sbjct: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120

Query: 177 GETISRHFNMVLLAAVHLHDELIK 201
           GET+SRHFN+VLLA + L++ELIK
Sbjct: 121 GETVSRHFNIVLLAVLRLYEELIK 144

[Close]
BLAST of PI0009759 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 5.4e-49
Identity = 100/144 (69.44%), Postives = 118/144 (81.94%), Query Frame = 0 

Query: 57  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLV 116
           MD   ++ I+  F  SQR+LL+ L++L  D+KR+    Y+ RHRIRQLAYF +IH SDLV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 117 CRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWS 176
           CR+STRMDRR FAILCH LRT+AGL STEVVDVEEMV  F+HILAHDVKNRV+QREF+ S
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 177 GETISRHFNMVLLAAVHLHDELIK 201
           GETISRHFNMVLLA + LHDEL+K
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLK 144

[Close]
BLAST of PI0009759 vs. ExPASy TrEMBL
Match: A0A5A7U3Q8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00580 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 5.4e-49
Identity = 99/144 (68.75%), Postives = 121/144 (84.03%), Query Frame = 0 

Query: 57  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLV 116
           MD++ +  +LT FT++QR++L+TL  LM D+KRLPQT YD RHRIRQLAYF +IHESDLV
Sbjct: 1   MDQETLLGVLTAFTMAQRQMLLTLKALMNDNKRLPQTPYDTRHRIRQLAYFWMIHESDLV 60

Query: 117 CRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWS 176
           CR STRMDRR   ILCH LRTV+GL+STE+VDVE+MV  F+H+ AHDVKNRV+QREFV  
Sbjct: 61  CRESTRMDRRTLTILCHLLRTVSGLSSTEIVDVEKMVAMFLHVFAHDVKNRVIQREFVRF 120

Query: 177 GETISRHFNMVLLAAVHLHDELIK 201
           GET+S+HFN+VLLA V L+ ELIK
Sbjct: 121 GETVSQHFNIVLLAVVRLYKELIK 144

[Close]
BLAST of PI0009759 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 5.4e-49
Identity = 100/144 (69.44%), Postives = 118/144 (81.94%), Query Frame = 0 

Query: 57  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLV 116
           MD   ++ I+  F  SQR+LL+ L++L  D+KR+    Y+ RHRIRQLAYF +IH SDLV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 117 CRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWS 176
           CR+STRMDRR FAILCH LRT+AGL STEVVDVEEMV  F+HILAHDVKNRV+QREF+ S
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 177 GETISRHFNMVLLAAVHLHDELIK 201
           GETISRHFNMVLLA + LHDEL+K
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLK 144

[Close]
BLAST of PI0009759 vs. NCBI nr
Match: KAA0043030.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 2.7e-50
Identity = 101/144 (70.14%), Postives = 123/144 (85.42%), Query Frame = 0 

Query: 57  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLV 116
           MD++ +   LT FT++QR++L+ L+ LM D+KRLPQT YD RHRIRQLAYF +IHESDLV
Sbjct: 1   MDQQTLLGALTAFTMAQRQMLLMLEALMNDNKRLPQTPYDTRHRIRQLAYFRMIHESDLV 60

Query: 117 CRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWS 176
           CR+STRMDRR F ILCH LRTV+GL+STE+VDVEEMV  F+H+LAHDVKNRV+QREFV S
Sbjct: 61  CRKSTRMDRRTFTILCHLLRTVSGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120

Query: 177 GETISRHFNMVLLAAVHLHDELIK 201
           GET+SRHFN+VL   V L++ELIK
Sbjct: 121 GETVSRHFNIVLFDVVRLYEELIK 144

[Close]
BLAST of PI0009759 vs. NCBI nr
Match: KAA0058874.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 207.2 bits (526), Expect = 1.3e-49
Identity = 100/144 (69.44%), Postives = 124/144 (86.11%), Query Frame = 0 

Query: 57  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLV 116
           MD + +  +LT FT +QR++L+TL++LM ++KRLP T  D RHRIR+LAYF +IHESDLV
Sbjct: 1   MDEQTLIGVLTAFTSAQRQILLTLELLMNNNKRLPHTPPDTRHRIRELAYFRMIHESDLV 60

Query: 117 CRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWS 176
           CR+STRMDRR FAILCH LR VAGL+STE+VDVEEMV  F+H+LAHDVKNRV+QREFV S
Sbjct: 61  CRQSTRMDRRTFAILCHLLRNVAGLSSTEIVDVEEMVAMFLHVLAHDVKNRVIQREFVRS 120

Query: 177 GETISRHFNMVLLAAVHLHDELIK 201
           GET+SRHFN+VLLA + L++ELIK
Sbjct: 121 GETVSRHFNIVLLAVLRLYEELIK 144

[Close]
BLAST of PI0009759 vs. NCBI nr
Match: KAA0049910.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK07651.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-48
Identity = 99/144 (68.75%), Postives = 121/144 (84.03%), Query Frame = 0 

Query: 57  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLV 116
           MD++ +  +LT FT++QR++L+TL  LM D+KRLPQT YD RHRIRQLAYF +IHESDLV
Sbjct: 1   MDQETLLGVLTAFTMAQRQMLLTLKALMNDNKRLPQTPYDTRHRIRQLAYFWMIHESDLV 60

Query: 117 CRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWS 176
           CR STRMDRR   ILCH LRTV+GL+STE+VDVE+MV  F+H+ AHDVKNRV+QREFV  
Sbjct: 61  CRESTRMDRRTLTILCHLLRTVSGLSSTEIVDVEKMVAMFLHVFAHDVKNRVIQREFVRF 120

Query: 177 GETISRHFNMVLLAAVHLHDELIK 201
           GET+S+HFN+VLLA V L+ ELIK
Sbjct: 121 GETVSQHFNIVLLAVVRLYKELIK 144

[Close]
BLAST of PI0009759 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-48
Identity = 100/144 (69.44%), Postives = 118/144 (81.94%), Query Frame = 0 

Query: 57  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLV 116
           MD   ++ I+  F  SQR+LL+ L++L  D+KR+    Y+ RHRIRQLAYF +IH SDLV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 117 CRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWS 176
           CR+STRMDRR FAILCH LRT+AGL STEVVDVEEMV  F+HILAHDVKNRV+QREF+ S
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 177 GETISRHFNMVLLAAVHLHDELIK 201
           GETISRHFNMVLLA + LHDEL+K
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLK 144

[Close]
BLAST of PI0009759 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 1.1e-48
Identity = 100/144 (69.44%), Postives = 118/144 (81.94%), Query Frame = 0 

Query: 57  MDRKAISEILTVFTVSQRELLMTLDILMKDSKRLPQTLYDIRHRIRQLAYFHLIHESDLV 116
           MD   ++ I+  F  SQR+LL+ L++L  D+KR+    Y+ RHRIRQLAYF +IH SDLV
Sbjct: 1   MDEHELASIVNAFIASQRQLLLMLELLKNDTKRITHIPYETRHRIRQLAYFRMIHGSDLV 60

Query: 117 CRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKNRVVQREFVWS 176
           CR+STRMDRR FAILCH LRT+AGL STEVVDVEEMV  F+HILAHDVKNRV+QREF+ S
Sbjct: 61  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFMRS 120

Query: 177 GETISRHFNMVLLAAVHLHDELIK 201
           GETISRHFNMVLLA + LHDEL+K
Sbjct: 121 GETISRHFNMVLLAVIRLHDELLK 144

[Close]
BLAST of PI0009759 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 63.9 bits (154), Expect = 1.7e-10
Identity = 32/94 (34.04%), Postives = 54/94 (57.45%), Query Frame = 0 

Query: 107 FHLIHESDLVCRRSTRMDRRMFAILCHFLRTVAGLASTEVVDVEEMVVRFMHILAHDVKN 166
           + +++  +  C  + RMD+ +F  LC  L+T   L  T  + +E  +  F+ I+ H+++ 
Sbjct: 32  YQILNGPNEQCFENFRMDKPVFYKLCDLLQTRGLLRHTNRIKIEAQLAIFLFIIGHNLRT 91

Query: 167 RVVQREFVWSGETISRHFNMVLLAAVHLHDELIK 201
           R VQ  F +SGETISRHFN VL A + +  +  +
Sbjct: 92  RAVQELFCYSGETISRHFNNVLNAVIAISKDFFQ 125

The following BLAST results are available for this feature:
BLAST of PI0009759 vs.
Match NameE-valueIdentityDescription
BLAST of PI0009759 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TI781.3e-5070.14Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UUT36.4e-5069.44Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TXW15.4e-4969.44Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U3Q85.4e-4968.75Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SWD85.4e-4969.44Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of PI0009759 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043030.12.7e-5070.14retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0058874.11.3e-4969.44retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049910.11.1e-4868.75retrotransposon protein [Cucumis melo var. makuwa] >TYK07651.1 retrotransposon p... [more]
KAA0046727.11.1e-4869.44retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon... [more]
KAA0034843.11.1e-4869.44retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of PI0009759 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G41980.11.7e-1034.04CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (Int... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR22930UNCHARACTERIZEDcoord: 82..202
NoneNo IPR availablePANTHERPTHR22930:SF216OS11G0577650 PROTEINcoord: 82..202

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0009759.1PI0009759.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding