PI0009745 (gene) Melon (PI 482460) v1

Overview


Name	PI0009745
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr06: 19460130 .. 19461535 (+)
RNA-Seq Expression	PI0009745
Synteny	PI0009745

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCGTTGCCGGGGAGCGACGGTAAGTTTTCTTAAACTCTTTTTAGGTTTAATTTCATTTTAGCTTCTTGATTCTATATTCAATTTGTATAAAAAATTTTAAAACCAAAAAGAGAAAGTTATTTTGAATATTCTTTTTTCTCTCCCTTACTTTGCATGTCCCGCTCTTCCAATCCACACTTACATTTCTTCGAAGATCTCAATAGGGAAGTGCGTAGAATTAAGAGAGAAAGGAGAGAAGAAAATAACCAAGATATTCCTCAAGAGCCTTTAGAAAACCAAAAGCCTACTTTAGAAAACCAAAACCTTGATAGACAAGGCATGGGCCAAGTTAGAGAAAAAACCTTAAAAGAGCTTTCCGAGCCTAACGAAGACCAAAGGCCGCTCTGTATAGTTATTCCCCCAACAACTCAACCCTTTGAGCTAAAACCTGGACTAATCCACCTTTTACCTATATTCAAGGGTAGTTCAGGCGAAGACCCCCATAAACACCTCAAAGACTTTCATATGGTTTGTGACTCAATTAGACCCCACAGAGTTTCAGAGGAACAACTCAACTTGAGAGCCTTTCCATTTTCCTTAATCGACACAGCAAAAAGATGGTTTTACTACCTAGAGCCAGGGTCTATAACCACTTGGGGAAGCCTCAAAAAGAAATTCCTAGAAAAGTTTTTCCCTGCTTCTAGAGCAAATAATATTAGGAAGGAAATCTACGGAATTAGGCAAGCCTTTGGAGAGTCATTGTTAGAATACTGGTAGCGCTTTAAGGAACTCTGTTCTAGCTTTCCCCATCACCATATTTCTGATCCTTCATTAATACAATATTTTTATTCTGGACTGCTAACCATGGATAGAAATACAGTAGATGCAGCAGTAGGTGGTGCTTTAGCTGATAAGACCCCTACTGAAGCAAGAGAGCTCATTTCAAGGATGGTCGAGAATTCACAGAATTTTGGCAACAGAGCATCCGAGCTCGACAATTCATTGACAAAAGAGGTTAGTGAACTTAAATCACAAATGCTTAATATGACTACTTTACTCACTTCTTTTGTGCAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATAGGACATCCTAATGACAAATGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTCGATCCTCAGAGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAGCCAACGACCCGCACAAGCAACGTCATCTTCAAATAATCAAGGTACTAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAATACAATTTCTTTTCAAAATGAAATGAAGCAACAAATATCTCAACTGACAAATGCAATAAGTAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTTAG

mRNA sequence

ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATAGGACATCCTAATGACAAATGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTCGATCCTCAGAGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAGCCAACGACCCGCACAAGCAACGTCATCTTCAAATAATCAAGCAACAAATATCTCAACTGACAAATGCAATAAGTAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTTAG

Coding sequence (CDS)

ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATAGGACATCCTAATGACAAATGTCCTGACCTTGTGGAAGAGGCAAATGTCATTAGGAAGTCGATCCTCAGAGTAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGATAGCCAACGACCCGCACAAGCAACGTCATCTTCAAATAATCAAGCAACAAATATCTCAACTGACAAATGCAATAAGTAAGCTAGAAGGCAAAGGCAAGCTTCCAGCTTAG

Protein sequence

MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHKQRHLQIIKQQISQLTNAISKLEGKGKLPA

Homology

[Close]

BLAST of PI0009745 vs. ExPASy TrEMBL
Match: A0A5A7USL5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G004630 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIAND 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++R+         P G     +      N 
Sbjct: 246 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRR-------YDPHGTNLEDIIKALATNT 305

Query: 69  PHKQRHLQIIKQQISQLTNAISKLEGKGKLPA 101
              Q   Q +KQQ++QLT AISK++GKGKLPA
Sbjct: 306 LSFQ---QEMKQQMTQLTTAISKMDGKGKLPA 327

[Close]

BLAST of PI0009745 vs. ExPASy TrEMBL
Match: A0A5A7ULU1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G002130 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.2e-11
Identity = 47/122 (38.52%), Postives = 62/122 (50.82%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLT--LDGETIA 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ NV+R+         P G T  +   D     
Sbjct: 82  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNVVRR-------YDPHGNTCNSGWRDNPNFR 141

Query: 69  NDPHKQRHLQI----------------------------IKQQISQLTNAISKLEGKGKL 101
                Q+H Q+                            +KQQI+QLT AISK++GKGKL
Sbjct: 142 WGNDNQKHTQVPPTSSNQGTNLKDIIKALAINTLSFQQEMKQQITQLTTAISKMDGKGKL 196

[Close]

BLAST of PI0009745 vs. ExPASy TrEMBL
Match: A0A5A7TE06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G001460 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.7e-11
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 11  NVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPH 70
           N    +CGVCGL+GHPNDKCP ++E+ N++RK  L     M + +    L   T++    
Sbjct: 149 NSLTKECGVCGLVGHPNDKCPKVIEDVNIVRKYDLH---GMNLEDIIKALATNTLS---- 208

Query: 71  KQRHLQIIKQQISQLTNAISKLEGKGKLPA 101
                Q +KQQ++Q T AISK++GKGKLPA
Sbjct: 209 ---FQQEMKQQMTQFTTAISKMDGKGKLPA 228

[Close]

BLAST of PI0009745 vs. ExPASy TrEMBL
Match: A0A5D3DIP6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00340 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.3e-11
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 12  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHK 71
           +KV KCGVCGL+GHPNDKCP+++E+ N++                               
Sbjct: 290 LKVTKCGVCGLVGHPNDKCPEVIEDVNIV------------------------------- 347

Query: 72  QRHLQIIKQQISQLTNAISKLEGKGKLPA 101
           QR+   +KQQI+QLT AISK+EGKGKL A
Sbjct: 350 QRYDPTMKQQITQLTTAISKMEGKGKLLA 347

[Close]

BLAST of PI0009745 vs. ExPASy TrEMBL
Match: A0A5D3C4I5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold572G00210 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.1e-10
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIAND 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++++         P G     +      N 
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQR-------YDPHGTNLEDIIKALATNT 126

Query: 69  PHKQRHLQIIKQQISQLTNAISKLEGKGKL 99
              Q   Q +KQQ++QLT AISK++GKGKL
Sbjct: 127 LSFQ---QEMKQQMTQLTTAISKMDGKGKL 146

[Close]

BLAST of PI0009745 vs. NCBI nr
Match: KAA0058150.1 (uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.1e-12
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIAND 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++R+         P G     +      N 
Sbjct: 246 GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRR-------YDPHGTNLEDIIKALATNT 305

Query: 69  PHKQRHLQIIKQQISQLTNAISKLEGKGKLPA 101
              Q   Q +KQQ++QLT AISK++GKGKLPA
Sbjct: 306 LSFQ---QEMKQQMTQLTTAISKMDGKGKLPA 327

[Close]

BLAST of PI0009745 vs. NCBI nr
Match: KAA0056048.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 4.5e-11
Identity = 47/122 (38.52%), Postives = 62/122 (50.82%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLT--LDGETIA 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ NV+R+         P G T  +   D     
Sbjct: 82  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNVVRR-------YDPHGNTCNSGWRDNPNFR 141

Query: 69  NDPHKQRHLQI----------------------------IKQQISQLTNAISKLEGKGKL 101
                Q+H Q+                            +KQQI+QLT AISK++GKGKL
Sbjct: 142 WGNDNQKHTQVPPTSSNQGTNLKDIIKALAINTLSFQQEMKQQITQLTTAISKMDGKGKL 196

[Close]

BLAST of PI0009745 vs. NCBI nr
Match: KAA0041664.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 7.7e-11
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 11  NVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPH 70
           N    +CGVCGL+GHPNDKCP ++E+ N++RK  L     M + +    L   T++    
Sbjct: 149 NSLTKECGVCGLVGHPNDKCPKVIEDVNIVRKYDLH---GMNLEDIIKALATNTLS---- 208

Query: 71  KQRHLQIIKQQISQLTNAISKLEGKGKLPA 101
                Q +KQQ++Q T AISK++GKGKLPA
Sbjct: 209 ---FQQEMKQQMTQFTTAISKMDGKGKLPA 228

[Close]

BLAST of PI0009745 vs. NCBI nr
Match: KAA0025369.1 (uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK23432.1 uncharacterized protein E5676_scaffold605G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 12  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIANDPHK 71
           +KV KCGVCGL+GHPNDKCP+++E+ N++                               
Sbjct: 290 LKVTKCGVCGLVGHPNDKCPEVIEDVNIV------------------------------- 347

Query: 72  QRHLQIIKQQISQLTNAISKLEGKGKLPA 101
           QR+   +KQQI+QLT AISK+EGKGKL A
Sbjct: 350 QRYDPTMKQQITQLTTAISKMEGKGKLLA 347

[Close]

BLAST of PI0009745 vs. NCBI nr
Match: KAA0066512.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06128.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 2.3e-10
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 9   GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKSILRVTLTMPVGETTLTLDGETIAND 68
           G  +KV KCGVCGL+GHPNDKCP+++E+ N++++         P G     +      N 
Sbjct: 67  GTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVQR-------YDPHGTNLEDIIKALATNT 126

Query: 69  PHKQRHLQIIKQQISQLTNAISKLEGKGKL 99
              Q   Q +KQQ++QLT AISK++GKGKL
Sbjct: 127 LSFQ---QEMKQQMTQLTTAISKMDGKGKL 146

The following BLAST results are available for this feature:

BLAST of PI0009745 vs.


Match Name	E-value	Identity	Description

BLAST of PI0009745 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7USL5	2.0e-12	46.74	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7ULU1	2.2e-11	38.52	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7TE06	3.7e-11	44.44	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3DIP6	8.3e-11	43.82	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C4I5	1.1e-10	44.44	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0009745 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058150.1	4.1e-12	46.74	uncharacterized protein E6C27_scaffold274G004630 [Cucumis melo var. makuwa]	[more]
KAA0056048.1	4.5e-11	38.52	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0041664.1	7.7e-11	44.44	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0025369.1	1.7e-10	43.82	uncharacterized protein E6C27_scaffold1204G00530 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0066512.1	2.3e-10	44.44	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK06128.1 retrotranspos...	[more]

BLAST of PI0009745 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 75..95
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 5..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009745.1	PI0009745.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding