PI0009678 (gene) Melon (PI 482460) v1

Overview


Name	PI0009678
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Glycerophosphocholine acyltransferase 1
Location	chr03: 15447089 .. 15448038 (-)
RNA-Seq Expression	PI0009678
Synteny	PI0009678

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACAAACGAAAGAGATGTTATCAAAACAAGCAGTTCAAACGAAAGAGATTCTATCTAAACAGGCGGTAAAGATCGCTAAGCAGGCCGAAGAACACGAACAATTCATTAATAAGGTTTGTCTCTCACTGTAGTGTTGAATCGAGTCGATTAGACTGGTTTAATGTTGTTGAATTTCAATTTACCGCCATCGCGAGAATGATTTATGTCTTATCGTTTTCGATTCTGTTGCATTTAGAATCTGAGTTTGTGAGGCATTTTCTATCAACTTATGTAGGTTACGCACCTGCTTGGAGTTCTTGGTTTCAGATTCTGCTTCATCTTAGGAGCGAGTGAGTTAAATCATCTAAATCAATGGATTGCAATGCTTTTACCTTTTGCAATATTGGATTGATTTTCCTTTTTTTGGCCTTTTTTTCTGTTCAGGACCTCAAGATATTCCATATGTATATTGTTTCTTTTATGTTACCTTTGTTCCTCTTCGTTGGATATATTATCGGTTCAAGAAATGGCATTACTACCTCTTGCTAAGCTTTGCATCTTTTCTTGTTTTTTCATTTCCCTTCAATTTGCTACCATCTATATCACCGTTGGAGAAGAAGAAAATCCATTATTCTTGGAAAAAAACGAGTGTTAATCATCAGTGATCAGGTTTATGGTCTTAAAAATTTGATAAAAAATGTTTGTGTGATTTTTGTCTTTAAGCAAGTTGTACTGTTGAAGTTGGAGTTAAGATCTACTCACTGTAGATTGTACTCTTAAAAATTTGATAAAAATTCTTCCTACTTCTGTAGATTGCATCGAGGGGATGGCATTGAATATGCGTGTGAAGGATGAAATATCTCCAACTCTGAGGAATATAGTCGATCTATTTGATGAAGATAACATACGACCATCAGATTATTGTAGTTCAGGTCCGAAAGCAGCCGAGCAAGTGCATATGGATTAA

mRNA sequence

ATGGCACAAACGAAAGAGATGTTATCAAAACAAGCAGTTCAAACGAAAGAGATTCTATCTAAACAGGCGGTAAAGATCGCTAAGCAGGCCGAAGAACACGAACAATTCATTAATAAGGTTACGCACCTGCTTGGAGTTCTTGGTTTCAGATTCTGCTTCATCTTAGGAGCGAATTGCATCGAGGGGATGGCATTGAATATGCGTGTGAAGGATGAAATATCTCCAACTCTGAGGAATATAGTCGATCTATTTGATGAAGATAACATACGACCATCAGATTATTGTAGTTCAGGTCCGAAAGCAGCCGAGCAAGTGCATATGGATTAA

Coding sequence (CDS)

ATGGCACAAACGAAAGAGATGTTATCAAAACAAGCAGTTCAAACGAAAGAGATTCTATCTAAACAGGCGGTAAAGATCGCTAAGCAGGCCGAAGAACACGAACAATTCATTAATAAGGTTACGCACCTGCTTGGAGTTCTTGGTTTCAGATTCTGCTTCATCTTAGGAGCGAATTGCATCGAGGGGATGGCATTGAATATGCGTGTGAAGGATGAAATATCTCCAACTCTGAGGAATATAGTCGATCTATTTGATGAAGATAACATACGACCATCAGATTATTGTAGTTCAGGTCCGAAAGCAGCCGAGCAAGTGCATATGGATTAA

Protein sequence

MAQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHEQFINKVTHLLGVLGFRFCFILGANCIEGMALNMRVKDEISPTLRNIVDLFDEDNIRPSDYCSSGPKAAEQVHMD

Homology

[Close]

BLAST of PI0009678 vs. ExPASy Swiss-Prot
Match: B9RK42 (Glycerophosphocholine acyltransferase 1 OS=Ricinus communis OX=3988 GN=GPC1 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.3e-18
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 0


Query: 1  MAQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHEQFINKVTHLLGVLGF-RFCFILGA 58
          +AQTKE+LSKQA QTKEILSKQAVKIAKQAEEHE FINKVTHLLGVLGF  FCF+LGA
Sbjct: 32 VAQTKEILSKQANQTKEILSKQAVKIAKQAEEHESFINKVTHLLGVLGFGGFCFLLGA 89

[Close]

BLAST of PI0009678 vs. ExPASy Swiss-Prot
Match: Q9FJB4 (Glycerophosphocholine acyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=GPC1 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.3e-17
Identity = 48/58 (82.76%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MAQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHEQFINKVTHLLGVLGF-RFCFILGA 58
          + QT+E+LSKQAVQT+EILSKQAVKIAKQAEEHE+FINKVTHL+GVLGF  FCF+LGA
Sbjct: 29 VVQTRELLSKQAVQTREILSKQAVKIAKQAEEHERFINKVTHLVGVLGFGGFCFLLGA 86

[Close]

BLAST of PI0009678 vs. ExPASy Swiss-Prot
Match: A0A078H868 (Glycerophosphocholine acyltransferase 1 OS=Brassica napus OX=3708 GN=GPC1 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.8e-17
Identity = 47/58 (81.03%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MAQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHEQFINKVTHLLGVLGF-RFCFILGA 58
          + QT+++LSKQAVQT+EILSKQAVKIAKQAEEHE+FINKVTHL+GVLGF  FCF+LGA
Sbjct: 33 VVQTRDLLSKQAVQTREILSKQAVKIAKQAEEHERFINKVTHLVGVLGFGGFCFLLGA 90

[Close]

BLAST of PI0009678 vs. ExPASy Swiss-Prot
Match: Q564K3 (Condensin complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CAPH PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 2.6e-07
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 59  CIEGMALNMRVKDEISPTLRNIVDLFDEDNIRPSDYCSSGPKAAE 104
           C+E M LNMR KDEI P+LR I++ FDE+N RPSD  S G +  E
Sbjct: 273 CVEQMVLNMRKKDEIVPSLRAIINQFDEENQRPSDTFSCGQQTTE 317

[Close]

BLAST of PI0009678 vs. ExPASy TrEMBL
Match: A0A0A0LN33 (Condensin complex subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_2G416140 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.5e-18
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 58  NCIEGMALNMRVKDEISPTLRNIVDLFDEDNIRPSDYCSSGPKAAEQVHMD 109
           +CIE M LNMRVKDEISPTLRNIV+LFDEDNIRPSDYCSSGPKAAEQVHMD
Sbjct: 275 DCIEEMVLNMRVKDEISPTLRNIVNLFDEDNIRPSDYCSSGPKAAEQVHMD 325

[Close]

BLAST of PI0009678 vs. ExPASy TrEMBL
Match: A0A5D3CCN8 (Condensin complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold458G00190 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-18
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 58  NCIEGMALNMRVKDEISPTLRNIVDLFDEDNIRPSDYCSSGPKAAEQVHMD 109
           +CI+ M LNMRVKDEISPTLRNIV+LFDEDNIRPSDYCSSGPKAAEQVHMD
Sbjct: 275 DCIQEMVLNMRVKDEISPTLRNIVNLFDEDNIRPSDYCSSGPKAAEQVHMD 325

[Close]

BLAST of PI0009678 vs. ExPASy TrEMBL
Match: A0A5A7SUZ7 (Condensin complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00150 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-18
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 58  NCIEGMALNMRVKDEISPTLRNIVDLFDEDNIRPSDYCSSGPKAAEQVHMD 109
           +CI+ M LNMRVKDEISPTLRNIV+LFDEDNIRPSDYCSSGPKAAEQVHMD
Sbjct: 275 DCIQEMVLNMRVKDEISPTLRNIVNLFDEDNIRPSDYCSSGPKAAEQVHMD 325

[Close]

BLAST of PI0009678 vs. ExPASy TrEMBL
Match: A0A1S3C398 (Condensin complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103495989 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-18
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 58  NCIEGMALNMRVKDEISPTLRNIVDLFDEDNIRPSDYCSSGPKAAEQVHMD 109
           +CI+ M LNMRVKDEISPTLRNIV+LFDEDNIRPSDYCSSGPKAAEQVHMD
Sbjct: 275 DCIQEMVLNMRVKDEISPTLRNIVNLFDEDNIRPSDYCSSGPKAAEQVHMD 325

[Close]

BLAST of PI0009678 vs. ExPASy TrEMBL
Match: A0A4D9C4S6 (Glycerophosphocholine acyltransferase 1 OS=Salvia splendens OX=180675 GN=Saspl_016480 PE=3 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.4e-18
Identity = 56/66 (84.85%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 1  MAQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHEQFINKVTHLLGVLGF-RFCFILGANC 60
          +AQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHE FINKVTHLLGVLGF  FCFILGAN 
Sbjct: 32 VAQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHESFINKVTHLLGVLGFGGFCFILGANT 91

Query: 61 IEGMAL 66
            G+ +
Sbjct: 92 RNGIII 97

[Close]

BLAST of PI0009678 vs. NCBI nr
Match: XP_011649987.1 (condensin complex subunit 2 [Cucumis sativus] >KGN63223.1 hypothetical protein Csa_022294 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 3.2e-18
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 58  NCIEGMALNMRVKDEISPTLRNIVDLFDEDNIRPSDYCSSGPKAAEQVHMD 109
           +CIE M LNMRVKDEISPTLRNIV+LFDEDNIRPSDYCSSGPKAAEQVHMD
Sbjct: 275 DCIEEMVLNMRVKDEISPTLRNIVNLFDEDNIRPSDYCSSGPKAAEQVHMD 325

[Close]

BLAST of PI0009678 vs. NCBI nr
Match: XP_008455919.1 (PREDICTED: LOW QUALITY PROTEIN: condensin complex subunit 2 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 7.1e-18
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 58  NCIEGMALNMRVKDEISPTLRNIVDLFDEDNIRPSDYCSSGPKAAEQVHMD 109
           +CI+ M LNMRVKDEISPTLRNIV+LFDEDNIRPSDYCSSGPKAAEQVHMD
Sbjct: 275 DCIQEMVLNMRVKDEISPTLRNIVNLFDEDNIRPSDYCSSGPKAAEQVHMD 325

[Close]

BLAST of PI0009678 vs. NCBI nr
Match: TYK09591.1 (condensin complex subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 7.1e-18
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 58  NCIEGMALNMRVKDEISPTLRNIVDLFDEDNIRPSDYCSSGPKAAEQVHMD 109
           +CI+ M LNMRVKDEISPTLRNIV+LFDEDNIRPSDYCSSGPKAAEQVHMD
Sbjct: 275 DCIQEMVLNMRVKDEISPTLRNIVNLFDEDNIRPSDYCSSGPKAAEQVHMD 325

[Close]

BLAST of PI0009678 vs. NCBI nr
Match: KAA0034790.1 (condensin complex subunit 2 [Cucumis melo var. makuwa])

HSP 1 Score: 100.9 bits (250), Expect = 7.1e-18
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 0


Query: 58  NCIEGMALNMRVKDEISPTLRNIVDLFDEDNIRPSDYCSSGPKAAEQVHMD 109
           +CI+ M LNMRVKDEISPTLRNIV+LFDEDNIRPSDYCSSGPKAAEQVHMD
Sbjct: 275 DCIQEMVLNMRVKDEISPTLRNIVNLFDEDNIRPSDYCSSGPKAAEQVHMD 325

[Close]

BLAST of PI0009678 vs. NCBI nr
Match: XP_004144017.1 (uncharacterized membrane protein C776.05 isoform X1 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17
Identity = 55/58 (94.83%), Postives = 56/58 (96.55%), Query Frame = 0


Query: 1  MAQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHEQFINKVTHLLGVLGF-RFCFILGA 58
          MAQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHE+FINKVTHLLGVLGF  FCFILGA
Sbjct: 34 MAQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHERFINKVTHLLGVLGFGGFCFILGA 91

[Close]

BLAST of PI0009678 vs. TAIR 10
Match: AT5G35460.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838 (InterPro:IPR021261); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 90.5 bits (223), Expect = 8.9e-19
Identity = 48/58 (82.76%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 1  MAQTKEMLSKQAVQTKEILSKQAVKIAKQAEEHEQFINKVTHLLGVLGF-RFCFILGA 58
          + QT+E+LSKQAVQT+EILSKQAVKIAKQAEEHE+FINKVTHL+GVLGF  FCF+LGA
Sbjct: 29 VVQTRELLSKQAVQTREILSKQAVKIAKQAEEHERFINKVTHLVGVLGFGGFCFLLGA 86

[Close]

BLAST of PI0009678 vs. TAIR 10
Match: AT2G32590.1 (LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has 467 Blast hits to 447 proteins in 202 species: Archae - 0; Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses - 1; Other Eukaryotes - 108 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.9e-08
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 59  CIEGMALNMRVKDEISPTLRNIVDLFDEDNIRPSDYCSSGPKAAE 104
           C+E M LNMR KDEI P+LR I++ FDE+N RPSD  S G +  E
Sbjct: 273 CVEQMVLNMRKKDEIVPSLRAIINQFDEENQRPSDTFSCGQQTTE 317

The following BLAST results are available for this feature:

BLAST of PI0009678 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9RK42	4.3e-18	87.93	Glycerophosphocholine acyltransferase 1 OS=Ricinus communis OX=3988 GN=GPC1 PE=1...	[more]
Q9FJB4	1.3e-17	82.76	Glycerophosphocholine acyltransferase 1 OS=Arabidopsis thaliana OX=3702 GN=GPC1 ...	[more]
A0A078H868	2.8e-17	81.03	Glycerophosphocholine acyltransferase 1 OS=Brassica napus OX=3708 GN=GPC1 PE=1 S...	[more]
Q564K3	2.6e-07	57.78	Condensin complex subunit 2 OS=Arabidopsis thaliana OX=3702 GN=CAPH PE=1 SV=1	[more]

BLAST of PI0009678 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LN33	1.5e-18	92.16	Condensin complex subunit 2 OS=Cucumis sativus OX=3659 GN=Csa_2G416140 PE=3 SV=1	[more]
A0A5D3CCN8	3.4e-18	90.20	Condensin complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SUZ7	3.4e-18	90.20	Condensin complex subunit 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A1S3C398	3.4e-18	90.20	Condensin complex subunit 2 OS=Cucumis melo OX=3656 GN=LOC103495989 PE=3 SV=1	[more]
A0A4D9C4S6	3.4e-18	84.85	Glycerophosphocholine acyltransferase 1 OS=Salvia splendens OX=180675 GN=Saspl_0...	[more]

BLAST of PI0009678 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649987.1	3.2e-18	92.16	condensin complex subunit 2 [Cucumis sativus] >KGN63223.1 hypothetical protein C...	[more]
XP_008455919.1	7.1e-18	90.20	PREDICTED: LOW QUALITY PROTEIN: condensin complex subunit 2 [Cucumis melo]	[more]
TYK09591.1	7.1e-18	90.20	condensin complex subunit 2 [Cucumis melo var. makuwa]	[more]
KAA0034790.1	7.1e-18	90.20	condensin complex subunit 2 [Cucumis melo var. makuwa]	[more]
XP_004144017.1	2.7e-17	94.83	uncharacterized membrane protein C776.05 isoform X1 [Cucumis sativus]	[more]

BLAST of PI0009678 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35460.1	8.9e-19	82.76	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2838...	[more]
AT2G32590.1	1.9e-08	57.78	LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 9 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31201:SF8	SUBFAMILY NOT NAMED	coord: 10..59
IPR021261	Glycerophosphocholine acyltransferase 1	PANTHER	PTHR31201	OS01G0585100 PROTEIN	coord: 10..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009678.1	PI0009678.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division
biological_process	GO:0007076	mitotic chromosome condensation
biological_process	GO:0006656	phosphatidylcholine biosynthetic process
cellular_component	GO:0000793	condensed chromosome
cellular_component	GO:0000796	condensin complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016746	acyltransferase activity
molecular_function	GO:0003682	chromatin binding