PI0009677 (gene) Melon (PI 482460) v1

Overview
NamePI0009677
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionCCR4-NOT transcription complex subunit like
Locationchr01: 26480236 .. 26482662 (-)
RNA-Seq ExpressionPI0009677
SyntenyPI0009677
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTGCTAGATCCTGAGGTTTGTTTTTGGGGAATTGATGTTTTCAATTGGATTTCCTATGCTATAATAGAGGAGTTTGCTTGTTTTTTTATATAATATTTTCTTTAAAAAAAATCCCATGTGTACTAAAAAAGAAAATATTGGTACGATAAGAAAATGACACGTGGATTACGAATGGAAGAAGCACCAACCACTCGCTCTTTCTCTCCGGAAGCTCCGAAGTCTTTGTATTACGACTAATTCACTGACGGTGAAGAATGGCTTCCATCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTTGATTCCCAGAGCCGTTCTTCCATCTTCCATCGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCTTTCTTTCAGGTATCCGTCGTCTAATCACTCCTCTTCGATTCCTCGTATTCAACTTATAAATCTCAGAATATTTCGGGATTTTTATATGCTGTAATGAGACTAATGAGCATGTTTGTAATGAAGTTCATCTGATACTTAGTCCTGTAAAGTGGATCGACTGTTTCTTTTTGTTGAAAATGGAATCTAGCTGGTAGTTGCTAATTCCTAACTGGTTTTAGCTACTAATGCCAAGTGCTTCCACTAGTATTTGGTTTTATTTTTCTGAGTTTATCTTTGACGCACCTTTGATTTGATTCCTACTTAAGCAGTTTTCTTCAATCCCGGCATTCAACATCTGTAATCTCAGAGGATATCCGGATTTTATGTGTTGAATTGAGCAGTGTTAGCATTTAAGTGAATCCACCTTGATTTTTATGTTGAAAGTGGAATTGAACGATTGTTGCTGGCTTGCTGGTTCCTAGTTGGTTTCAGCTACTGACGCAAACAGCTTATTAACTTTCTGAATGTTTTGTAGTTTAAATGTTATGAACCTTTGATTTGATACCTATTTTAGCAGTCCTCTTCAACAAATTGCTTCTGGCTTCGGCATGTACAGTTTCAAAGGATATCTGGAGTTATTATTTGGCGTCGAACTGTTGTGAGCATTTTAGCATTCAAGTTCGTCTATAACTTTGTTATGTAAAGGCTATCCATTTTGATTCTTGTGCTGAAAATAGAATTTGAAGGTAGTTACTAAACCCTAATTCCCAATTAAACACAACCCTCGGCCCAAACAAGGAAGCCCACTCCACTCCACCTAAACCCTCAGCCCAAACAATCCCAAAGTGCTTAAAGTACTAGTATTAGGATTGTGACTTTCTGATCTTGTTCGACGTCTACATGGGATGGATCCTTGATTTGATACTTATTTGGTCATTACATGAGCATGAATAGAACTTTGTCTATTAATTTTTGGTTTCTGATGCAAATATGGAAAGTCTTATTGGTTCTTTCTGAAAGCTCTTCTCTGATAGTGAACAGTTCTACTTAAGATTTCCGGGAAATAATAATTCTGGAATGACCTATGTGGTTTCTTGAAAAAAGAATTAAAACATATTATCTTCTCAAGTTGTCAGTTGACTCATATATGAAGTAGAATGAATCGAACCCATCAGCACCTGTGCGTTCTATGCCAAGTTCCTCTTTAGAATCTTGTGGAGTATTGGGGTGGAAAATAAAGTTTCCCACCATTCTTGGTTCCATCTTTTAGGATCTTTATTGTCCTTTGTCTGTTTAGCTTTTCGCTTTTTGGTTTCTTTTCATATCATTTACTACTGGTAATTATTTACTCAGAAAGATATGGCATGCTTTTATAAGGGCCAAATCAGTAGCTGAAATTCTCTTTTCACTTGCTAAGCACATTTACCAGAAACTATAATACATTTAAGAATTAAGAGTATGAAATGACTGATTTTTGTATTCGCAATATTTACTTAGATGAGTGCTTGTGTGATTTCTTTTATACAGGTACAGGAAGAACATCATTGGATTGGAATTAAGGCAAAGATCTATAGCAGCCTCAAAATCCACAGATGGGAATCCCATCAAGGATGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCTCAAGGTCCTCCATTTCTTACCATTTTGGCTGGCATTTTTGTCTTTTCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTTGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAGTGTCGCATAATTGGAATAATTTCATGTTCCTAAGCTTAAATCTGTATGGTTATATTTGTAGCAAAACTTGCTTCTTAGCCAGTTTTAGCTTTATTTCTAGTGAATAGATTTTATTTTCATCTTATTTATGCCCTAGCTTCGGTCTTTGGGTGATTAAAGATGAAATCACTTTCAAAAGTACACTATTTAGTGTAGTAGTTTCGCTTTTCGTGTTTAGGGTCATTCATGTTTGGAGATTTTAATCATTCATTTTTTTTTTTGGAGTTTAATTGAATAAAATAAACACGTCTTTA

mRNA sequence

GTTTGCTAGATCCTGAGGTTTGTTTTTGGGGAATTGATGTTTTCAATTGGATTTCCTATGCTATAATAGAGGAGTTTGCTTGTTTTTTTATATAATATTTTCTTTAAAAAAAATCCCATGTGTACTAAAAAAGAAAATATTGGTACGATAAGAAAATGACACGTGGATTACGAATGGAAGAAGCACCAACCACTCGCTCTTTCTCTCCGGAAGCTCCGAAGTCTTTGTATTACGACTAATTCACTGACGGTGAAGAATGGCTTCCATCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTTGATTCCCAGAGCCGTTCTTCCATCTTCCATCGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCTTTCTTTCAGGTACAGGAAGAACATCATTGGATTGGAATTAAGGCAAAGATCTATAGCAGCCTCAAAATCCACAGATGGGAATCCCATCAAGGATGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCTCAAGGTCCTCCATTTCTTACCATTTTGGCTGGCATTTTTGTCTTTTCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTTGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAGTGTCGCATAATTGGAATAATTTCATGTTCCTAAGCTTAAATCTGTATGGTTATATTTGTAGCAAAACTTGCTTCTTAGCCAGTTTTAGCTTTATTTCTAGTGAATAGATTTTATTTTCATCTTATTTATGCCCTAGCTTCGGTCTTTGGGTGATTAAAGATGAAATCACTTTCAAAAGTACACTATTTAGTGTAGTAGTTTCGCTTTTCGTGTTTAGGGTCATTCATGTTTGGAGATTTTAATCATTCATTTTTTTTTTTGGAGTTTAATTGAATAAAATAAACACGTCTTTA

Coding sequence (CDS)

ATGGCTTCCATCTTCGCTGCGCCGCCGTCTCAACTGAATCTCACATCCCGCCGGAGTTTGATTCCCAGAGCCGTTCTTCCATCTTCCATCGCCAGCATTCAATTTCACTCGAACGCCTCTCCATTTCTTTCTTTCAGGTACAGGAAGAACATCATTGGATTGGAATTAAGGCAAAGATCTATAGCAGCCTCAAAATCCACAGATGGGAATCCCATCAAGGATGAAAATAGTTCGAGTAAAGCAAGTAGTGATGATGCTCAAGGTCCTCCATTTCTTACCATTTTGGCTGGCATTTTTGTCTTTTCCCTTATACTATGGATATTCAGTTCTGCTGTTACGTCACTTTTTGGTCTAGTCGTCAAGCTGATCTCAGCAAAATAG

Protein sequence

MASIFAAPPSQLNLTSRRSLIPRAVLPSSIASIQFHSNASPFLSFRYRKNIIGLELRQRSIAASKSTDGNPIKDENSSSKASSDDAQGPPFLTILAGIFVFSLILWIFSSAVTSLFGLVVKLISAK
Homology
BLAST of PI0009677 vs. ExPASy TrEMBL
Match: A0A0A0K9W1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.7e-50
Identity = 115/126 (91.27%), Postives = 117/126 (92.86%), Query Frame = 0

Query: 1   MASIFAAPPSQLNLTSRRSLIPRAVLPSSIASIQFHSNASPFLSFRYRKNIIGLELRQRS 60
           MAS+FAAPPSQLNLTSRRS I RA LPS IASIQFHSNASPF SFRYRKNIIGLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  IAASKSTDGNPIKDENSSSKASSDDAQGPPFLTILAGIFVFSLILWIFSSAVTSLFGLVV 120
           IAASKSTDGN IK+ENSSSKASSDDAQGPPFLTILAG FV SLILWIFSSAVTSL GLVV
Sbjct: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120

Query: 121 KLISAK 127
           KLISAK
Sbjct: 121 KLISAK 126

BLAST of PI0009677 vs. ExPASy TrEMBL
Match: A0A6J1GPL5 (uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC111455984 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.2e-37
Identity = 100/128 (78.12%), Postives = 107/128 (83.59%), Query Frame = 0

Query: 1   MASIFAAPPSQLNLTSRRSLIPRAVLPSSIASIQFHSNASPFLSFRYRKNIIGLELRQR- 60
           MASIF+APPS+LNLTSR SLI  AVLPSSIA IQ+HSNA P  SFRYR N  GLELRQR 
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRS 60

Query: 61  -SIAASKSTDGNPIKDENSSSKASSDDAQGPPFLTILAGIFVFSLILWIFSSAVTSLFGL 120
            SI AS S+DGN IK+EN SSKASS DAQGPPFLTILAGIFVFSL+LW+ SSA TSL GL
Sbjct: 61  FSITASNSSDGNSIKEENGSSKASS-DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120

Query: 121 VVKLISAK 127
           VVKLIS K
Sbjct: 121 VVKLISTK 126

BLAST of PI0009677 vs. ExPASy TrEMBL
Match: A0A6J1JUC2 (uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.7e-35
Identity = 97/126 (76.98%), Postives = 104/126 (82.54%), Query Frame = 0

Query: 1   MASIFAAPPSQLNLTSRRSLIPRAVLPSSIASIQFHSNASPFLSFRYRKNIIGLELRQR- 60
           MASIFAAPPS+LNLTSR SLI  AVLPSSIA IQ+HSNA P  SFRYR N  GLEL  R 
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELSPRS 60

Query: 61  -SIAASKSTDGNPIKDENSSSKASSDDAQGPPFLTILAGIFVFSLILWIFSSAVTSLFGL 120
            SI AS S+DGN I++EN SSKASS DAQGPPFLTILAGIFVFSL+LW+ SSA TSL GL
Sbjct: 61  FSITASNSSDGNSIEEENGSSKASS-DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120

Query: 121 VVKLIS 125
           VVKLIS
Sbjct: 121 VVKLIS 124

BLAST of PI0009677 vs. ExPASy TrEMBL
Match: A0A5A7UVF6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001230 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.4e-31
Identity = 80/88 (90.91%), Postives = 81/88 (92.05%), Query Frame = 0

Query: 1  MASIFAAPPSQLNLTSRRSLIPRAVLPSSIASIQFHSNASPFLSFRYRKNIIGLELRQRS 60
          MASIF APPSQLNLTSRRSL  RAVLPSSIASIQF SNASPFLSF  RKNIIGLELRQRS
Sbjct: 1  MASIFVAPPSQLNLTSRRSLTHRAVLPSSIASIQFQSNASPFLSFSNRKNIIGLELRQRS 60

Query: 61 IAASKSTDGNPIKDENSSSKASSDDAQG 89
          IAASKSTDGN IK+ENSSSKASSDDAQG
Sbjct: 61 IAASKSTDGNSIKEENSSSKASSDDAQG 88

BLAST of PI0009677 vs. ExPASy TrEMBL
Match: A0A6J1KVQ7 (uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.6e-27
Identity = 84/129 (65.12%), Postives = 96/129 (74.42%), Query Frame = 0

Query: 1   MASIFAAPPSQLNLTSRR-SLIPRAVLPSSIASIQFHSNASPFLSFRYRKNIIGLELRQR 60
           MAS+FAAPPSQL L+S R SL  +A LP SI  ++FH N  P  SFRY KN  GL+LRQR
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRY-KNTKGLKLRQR 60

Query: 61  --SIAASKSTDGNPIKDENSSSKASSDDAQGPPFLTILAGIFVFSLILWIFSSAVTSLFG 120
             SI AS S+DGN  K+EN  SK +  DAQGPPFLTILAG FVFSL+LWI SS+VT+L  
Sbjct: 61  SFSITASNSSDGNSTKEENDGSKVTG-DAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIA 120

Query: 121 LVVKLISAK 127
           LVVKLIS K
Sbjct: 121 LVVKLISTK 126

BLAST of PI0009677 vs. NCBI nr
Match: XP_011659472.1 (uncharacterized protein LOC101220885 [Cucumis sativus] >KGN45172.1 hypothetical protein Csa_016505 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-49
Identity = 115/126 (91.27%), Postives = 117/126 (92.86%), Query Frame = 0

Query: 1   MASIFAAPPSQLNLTSRRSLIPRAVLPSSIASIQFHSNASPFLSFRYRKNIIGLELRQRS 60
           MAS+FAAPPSQLNLTSRRS I RA LPS IASIQFHSNASPF SFRYRKNIIGLELRQRS
Sbjct: 1   MASVFAAPPSQLNLTSRRSSIHRAFLPSYIASIQFHSNASPFPSFRYRKNIIGLELRQRS 60

Query: 61  IAASKSTDGNPIKDENSSSKASSDDAQGPPFLTILAGIFVFSLILWIFSSAVTSLFGLVV 120
           IAASKSTDGN IK+ENSSSKASSDDAQGPPFLTILAG FV SLILWIFSSAVTSL GLVV
Sbjct: 61  IAASKSTDGNSIKEENSSSKASSDDAQGPPFLTILAGFFVLSLILWIFSSAVTSLLGLVV 120

Query: 121 KLISAK 127
           KLISAK
Sbjct: 121 KLISAK 126

BLAST of PI0009677 vs. NCBI nr
Match: XP_022953425.1 (uncharacterized protein LOC111455984 [Cucurbita moschata])

HSP 1 Score: 164.9 bits (416), Expect = 4.6e-37
Identity = 100/128 (78.12%), Postives = 107/128 (83.59%), Query Frame = 0

Query: 1   MASIFAAPPSQLNLTSRRSLIPRAVLPSSIASIQFHSNASPFLSFRYRKNIIGLELRQR- 60
           MASIF+APPS+LNLTSR SLI  AVLPSSIA IQ+HSNA P  SFRYR N  GLELRQR 
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRS 60

Query: 61  -SIAASKSTDGNPIKDENSSSKASSDDAQGPPFLTILAGIFVFSLILWIFSSAVTSLFGL 120
            SI AS S+DGN IK+EN SSKASS DAQGPPFLTILAGIFVFSL+LW+ SSA TSL GL
Sbjct: 61  FSITASNSSDGNSIKEENGSSKASS-DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120

Query: 121 VVKLISAK 127
           VVKLIS K
Sbjct: 121 VVKLISTK 126

BLAST of PI0009677 vs. NCBI nr
Match: XP_038899532.1 (uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida])

HSP 1 Score: 164.5 bits (415), Expect = 6.1e-37
Identity = 100/128 (78.12%), Postives = 106/128 (82.81%), Query Frame = 0

Query: 1   MASIFAAPPSQLNLTSRRSLIPRAVLPSSIASIQFHSNASPFLSFRYRKNIIGLELRQR- 60
           MASIFAAP  +LNLTSR SLI RA LPSSI +IQFHSNASPF SFRYR N  GLELRQR 
Sbjct: 1   MASIFAAPSFRLNLTSRPSLIHRAALPSSIDAIQFHSNASPFPSFRYR-NTRGLELRQRS 60

Query: 61  -SIAASKSTDGNPIKDENSSSKASSDDAQGPPFLTILAGIFVFSLILWIFSSAVTSLFGL 120
            SI AS S+DGN IK+EN SSKAS+ DAQGPPFLTILAGIFVFSL+LWIFSS VTS   L
Sbjct: 61  FSITASNSSDGNSIKEENGSSKAST-DAQGPPFLTILAGIFVFSLVLWIFSSVVTSFLSL 120

Query: 121 VVKLISAK 127
           VVKLIS K
Sbjct: 121 VVKLISTK 126

BLAST of PI0009677 vs. NCBI nr
Match: KAG6575660.1 (hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014210.1 hypothetical protein SDJN02_24385 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-36
Identity = 100/128 (78.12%), Postives = 106/128 (82.81%), Query Frame = 0

Query: 1   MASIFAAPPSQLNLTSRRSLIPRAVLPSSIASIQFHSNASPFLSFRYRKNIIGLELRQR- 60
           MASIFAAPPS+LNLTSR SLI  AVLPSSIA IQ+HSNA P  SFRYR N  GLELRQR 
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRS 60

Query: 61  -SIAASKSTDGNPIKDENSSSKASSDDAQGPPFLTILAGIFVFSLILWIFSSAVTSLFGL 120
            SI AS S+D N IK+EN SSKASS DAQGPPFLTILAGIFVFSL+LW+ SSA TSL GL
Sbjct: 61  FSITASNSSDRNSIKEENGSSKASS-DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120

Query: 121 VVKLISAK 127
           VVKLIS K
Sbjct: 121 VVKLISTK 126

BLAST of PI0009677 vs. NCBI nr
Match: XP_022991945.1 (uncharacterized protein LOC111488436 [Cucurbita maxima])

HSP 1 Score: 157.9 bits (398), Expect = 5.7e-35
Identity = 97/126 (76.98%), Postives = 104/126 (82.54%), Query Frame = 0

Query: 1   MASIFAAPPSQLNLTSRRSLIPRAVLPSSIASIQFHSNASPFLSFRYRKNIIGLELRQR- 60
           MASIFAAPPS+LNLTSR SLI  AVLPSSIA IQ+HSNA P  SFRYR N  GLEL  R 
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELSPRS 60

Query: 61  -SIAASKSTDGNPIKDENSSSKASSDDAQGPPFLTILAGIFVFSLILWIFSSAVTSLFGL 120
            SI AS S+DGN I++EN SSKASS DAQGPPFLTILAGIFVFSL+LW+ SSA TSL GL
Sbjct: 61  FSITASNSSDGNSIEEENGSSKASS-DAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGL 120

Query: 121 VVKLIS 125
           VVKLIS
Sbjct: 121 VVKLIS 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K9W16.7e-5091.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G429580 PE=4 SV=1[more]
A0A6J1GPL52.2e-3778.13uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC1114559... [more]
A0A6J1JUC22.7e-3576.98uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436... [more]
A0A5A7UVF62.4e-3190.91Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1KVQ73.6e-2765.12uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025... [more]
Match NameE-valueIdentityDescription
XP_011659472.11.4e-4991.27uncharacterized protein LOC101220885 [Cucumis sativus] >KGN45172.1 hypothetical ... [more]
XP_022953425.14.6e-3778.13uncharacterized protein LOC111455984 [Cucurbita moschata][more]
XP_038899532.16.1e-3778.13uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida][more]
KAG6575660.11.8e-3678.13hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022991945.15.7e-3576.98uncharacterized protein LOC111488436 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0009677.1PI0009677.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane