PI0009517 (gene) Melon (PI 482460) v1

Overview
NamePI0009517
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionEKC/KEOPS complex, subunit Pcc1
Locationchr06: 8001541 .. 8003735 (+)
RNA-Seq ExpressionPI0009517
SyntenyPI0009517
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAGCCCTCATTTCTATAACATCTTTCAAATTTTCAATAATCTAATCCAACTTCTAAGCTGTCCTAAAATATTATAATCACCCTTGAAAAACAAAATAATTTAAACAATTTTATCATTTACCAATCGTTTTAAAAACAAAACAAATAAACCCTAAAATCATTCCCTCACATCCTAGTCAGTCATCTTCGTTTTCAACGAGTCACGGTCTCATCTTCTTCCCATTTCTTCCACTGCCACGCCTCAGCCTCGCCGCCGACCCTCCTCGCCACGACTCTGCCTTGCCGCTTCCGTCGCCGGTCAGTTTCAAAGTGCTCTTTCTATCACTCTCTTCTGAAATCTCCAGTAGTTAGGTAATATGGCATCTTCATGCTCGTCAAACCCTTCCATAAACTCAACCTTATCTGTATTCTTATCTTTGTTTCATAGGTTATTTGTGGGAAAAATCTGGCTGTTTTTCATTAGAATTGAAGCAATGACTCCGACAGCTTCCGTCGCTTCTGATGGAGAGGCCAAATGGGAATTCAGCTGGTTGTTCTCTCTCTCTAAGTCCATAAATGTATAATTATAAGTTTTCCTTTTATTATATGGCATATATGCTTTGAAATCGATTTGTTCGTAGATGTTGTCGTGTTAGCACTTGGTTTATAGCTTTGCCTCTTTAGCTTTATCTTAAATTAATTCTCCTGTGATTAATCATTTAAGTTATTTCTCTGGTTCATTGCAATTTCCACAAACAAAACAAGACGATGATAATGATTATCATCATGTTCTTGCTCCTGTCAACCCTTTGTTTGGTTTTCATTTCACCCTGAAAGTTCAATTTTTTGTTGCTGAATCATCTGGATTTTGTGGCCAGAGTAGTGTCATGAAAGCTTACTGTTTGAATGCCTTAAATCTGTTTTCTGGTGTTTCAAATAACCATACATGGGTCTCTATTTGTATTTATGTTATTAATTTTGACTCTAGGTTTAGATGAGCGTGCTATATATATACGAACTCTCTACTTCTAGAAGTTGTAATTTGTAATTTGATATTTGTCTCTCCTAATAAAAGTGCTCTCCTCCTTTGTCCGTTGATGTAACTAACACTATTAGCTAACCTTGTAAATCTCTGTGTCGATTTTTCTGTTGCTTTTGTTTTTTGTTTTCTTTTCTTCAGACAAAAAAGATACGAGATGGGTTTTGATGTGCTTGTTTTCTGTTTTCTTTGATTGTCAATTGCCACCAAATTCTCGGTTGTTGGAATTGATTGGACCTTTTTAACTAGCCAAATCTCTGTTCTTTTGCTGTCGTTTTTGGAAGCCAAAGTTGTTTTTTCAGCCTTGTCAGCGTTCAACAATTGCTACTTGTTTCTAAAATGTTCATCGCTTCTTTCTTTAAGTAAGCAACTGTTTGGATCATACATCGGAAACATGCAGTTCAACTCATTGTTAGCGATCTTTCATCTCTTCTAGATTGCCTTCGTAAAGACAGGACAAGTAATTTTCTTCTTTTTCCAACTGGTTTGCTCTCTGCAGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCTTCAATTGTCTATAAAGCTTTAATCGTCGATAAGGAGGTGCTTCTCGATGATATCAATCTTCACGTTGTTCTTCCAAAGTTAACTTGTTTCTGATTTGATTTCTGTGCTAAGAACAGTTACAGCCGGACAAGGTGAAAAGGGTGATGTCAATTTCTGATGGAAAACTTTCAACGTGAGCCTCTTTTTTGGTCCTTGCATTCATAGTTTTTAATGTACTTCTGCTTAGTAATGCCATTGCATTCTATCATATTTTGTAGACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTTAGTGCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTTGGACAAGAAGTGGATTTCTGATAGCCTTACTGACCTATTTACATGGCTCTCAAATATCAAGTGTCATTTTTTTTTGCTTAAAGTAGCTCTGATTTTAATTTACATCTGACCTGTAATTTTATCACAATGTTTTGTCATTGTTTGATCGAGTGTGAAGGTCTTTCTCCACCCATCATTCGAACATTGAGATCTAACAAGATAACATTTTCAATAAACATATTGTCCTTTATTACTCCTTACAGTCAACCATATAACTACTTGATATGTTATTTTATGCCCAATTTAGTTTT

mRNA sequence

CTAGCCCTCATTTCTATAACATCTTTCAAATTTTCAATAATCTAATCCAACTTCTAAGCTGTCCTAAAATATTATAATCACCCTTGAAAAACAAAATAATTTAAACAATTTTATCATTTACCAATCGTTTTAAAAACAAAACAAATAAACCCTAAAATCATTCCCTCACATCCTAGTCAGTCATCTTCGTTTTCAACGAGTCACGGTCTCATCTTCTTCCCATTTCTTCCACTGCCACGCCTCAGCCTCGCCGCCGACCCTCCTCGCCACGACTCTGCCTTGCCGCTTCCGTCGCCGGTCAGTTTCAAAGTGCTCTTTCTATCACTCTCTTCTGAAATCTCCAGTAGTTAGGTAATATGGCATCTTCATGCTCGTCAAACCCTTCCATAAACTCAACCTTATCTGTATTCTTATCTTTGTTTCATAGGTTATTTGTGGGAAAAATCTGGCTGTTTTTCATTAGAATTGAAGCAATGACTCCGACAGCTTCCGTCGCTTCTGATGGAGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCTTCAATTGTCTATAAAGCTTTAATCGTCGATAAGGAGTTACAGCCGGACAAGGTGAAAAGGGTGATGTCAATTTCTGATGGAAAACTTTCAACACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTTAGTGCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTTGGACAAGAAGTGGATTTCTGATAGCCTTACTGACCTATTTACATGGCTCTCAAATATCAAGTGTCATTTTTTTTTGCTTAAAGTAGCTCTGATTTTAATTTACATCTGACCTGTAATTTTATCACAATGTTTTGTCATTGTTTGATCGAGTGTGAAGGTCTTTCTCCACCCATCATTCGAACATTGAGATCTAACAAGATAACATTTTCAATAAACATATTGTCCTTTATTACTCCTTACAGTCAACCATATAACTACTTGATATGTTATTTTATGCCCAATTTAGTTTT

Coding sequence (CDS)

ATGGCATCTTCATGCTCGTCAAACCCTTCCATAAACTCAACCTTATCTGTATTCTTATCTTTGTTTCATAGGTTATTTGTGGGAAAAATCTGGCTGTTTTTCATTAGAATTGAAGCAATGACTCCGACAGCTTCCGTCGCTTCTGATGGAGAGGCCAAATGGGAATTCAGCTGTGACTTTGAAGTCGATTATGAGTCTGAGAAGAAAGCTTCAATTGTCTATAAAGCTTTAATCGTCGATAAGGAGTTACAGCCGGACAAGGTGAAAAGGGTGATGTCAATTTCTGATGGAAAACTTTCAACACACTTTGAGGCAGTGGAAGCAAGGTTTTTGCGTGCATCATTTAGTGCGTTTGTAGATGTGCTTACTCTTGCCACAAAAACAATCGAAGATTTTGGACAAGAAGTGGATTTCTGA

Protein sequence

MASSCSSNPSINSTLSVFLSLFHRLFVGKIWLFFIRIEAMTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDKVKRVMSISDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF
Homology
BLAST of PI0009517 vs. ExPASy TrEMBL
Match: A0A0A0L7A2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 8.2e-49
Identity = 103/111 (92.79%), Postives = 105/111 (94.59%), Query Frame = 0

Query: 28  GKIWLFFIRIEAMTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDK 87
           G+IWLFFIRIEAMTPTASVAS GE KWEFSCDFEVDYESEKKASIVYKAL+VDKELQPDK
Sbjct: 47  GEIWLFFIRIEAMTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDK 106

Query: 88  VKRVMSISDGKLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 139
           VKR MS SDGKLS HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE DF
Sbjct: 107 VKRAMSNSDGKLSIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 157

BLAST of PI0009517 vs. ExPASy TrEMBL
Match: A0A1S3CTG0 (uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.3e-42
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0

Query: 40  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDKVKRVMSISDGKL 99
           MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVY ALIVDKELQPDKVKR MSIS+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 100 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 139
           S HFEAVEARFLRASFS+FVDVLTLATKTIEDFG EV+F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

BLAST of PI0009517 vs. ExPASy TrEMBL
Match: A0A5D3CJ23 (EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001520 PE=3 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.3e-42
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0

Query: 40  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDKVKRVMSISDGKL 99
           MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVY ALIVDKELQPDKVKR MSIS+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 100 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 139
           S HFEAVEARFLRASFS+FVDVLTLATKTIEDFG EV+F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

BLAST of PI0009517 vs. ExPASy TrEMBL
Match: A0A6J1CHJ5 (uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011564 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 2.2e-41
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 0

Query: 38  EAMTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDKVKRVMSISDG 97
           EAM PTASVASDGEAKWEF CDFEVDYESEKKASIVY AL VDKELQPDKVKR M++SDG
Sbjct: 22  EAMAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDG 81

Query: 98  KLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVD 138
           KLS HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ +D
Sbjct: 82  KLSVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

BLAST of PI0009517 vs. ExPASy TrEMBL
Match: A0A6J1G2C3 (uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC111450028 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.0e-38
Identity = 84/99 (84.85%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 40  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDKVKRVMSISDGKL 99
           M PTASV SDG+AKWEFSCDFEVD ESEKKASIVY AL+VDKELQPDKVKR M++SDGKL
Sbjct: 1   MAPTASVVSDGDAKWEFSCDFEVDCESEKKASIVYNALVVDKELQPDKVKREMTVSDGKL 60

Query: 100 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 139
           S HFEAVEARFLRAS+SAF+DVLTLA KTIEDFGQ +DF
Sbjct: 61  SVHFEAVEARFLRASYSAFLDVLTLAIKTIEDFGQGLDF 99

BLAST of PI0009517 vs. NCBI nr
Match: XP_038895564.1 (uncharacterized protein LOC120083771 [Benincasa hispida])

HSP 1 Score: 187.2 bits (474), Expect = 9.6e-44
Identity = 94/99 (94.95%), Postives = 96/99 (96.97%), Query Frame = 0

Query: 40  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDKVKRVMSISDGKL 99
           M PTASVASDGEAKWEFSCDFEVDYESEKKASIVY ALIVDKELQPDKVKRVMS+SDGKL
Sbjct: 1   MAPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRVMSVSDGKL 60

Query: 100 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 139
           S HFEAVEARFLRASFSAFVDVLTLATKT+EDFGQEVDF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTVEDFGQEVDF 99

BLAST of PI0009517 vs. NCBI nr
Match: XP_008466840.1 (PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >KAA0050520.1 EKC/KEOPS complex, subunit Pcc1 [Cucumis melo var. makuwa] >TYK11292.1 EKC/KEOPS complex, subunit Pcc1 [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 6.9e-42
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 0

Query: 40  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDKVKRVMSISDGKL 99
           MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVY ALIVDKELQPDKVKR MSIS+GKL
Sbjct: 1   MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYNALIVDKELQPDKVKRAMSISNGKL 60

Query: 100 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 139
           S HFEAVEARFLRASFS+FVDVLTLATKTIEDFG EV+F
Sbjct: 61  SIHFEAVEARFLRASFSSFVDVLTLATKTIEDFGLEVEF 99

BLAST of PI0009517 vs. NCBI nr
Match: XP_004146228.1 (uncharacterized protein LOC101217139 [Cucumis sativus] >KAE8650547.1 hypothetical protein Csa_010241 [Cucumis sativus])

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-41
Identity = 92/99 (92.93%), Postives = 93/99 (93.94%), Query Frame = 0

Query: 40  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDKVKRVMSISDGKL 99
           MTPTASVAS GE KWEFSCDFEVDYESEKKASIVYKAL+VDKELQPDKVKR MS SDGKL
Sbjct: 1   MTPTASVASHGEPKWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKRAMSNSDGKL 60

Query: 100 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 139
           S HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE DF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEEDF 99

BLAST of PI0009517 vs. NCBI nr
Match: XP_022141079.1 (uncharacterized protein LOC111011564 [Momordica charantia])

HSP 1 Score: 178.3 bits (451), Expect = 4.4e-41
Identity = 90/100 (90.00%), Postives = 93/100 (93.00%), Query Frame = 0

Query: 38  EAMTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDKVKRVMSISDG 97
           EAM PTASVASDGEAKWEF CDFEVDYESEKKASIVY AL VDKELQPDKVKR M++SDG
Sbjct: 22  EAMAPTASVASDGEAKWEFRCDFEVDYESEKKASIVYNALAVDKELQPDKVKREMAVSDG 81

Query: 98  KLSTHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVD 138
           KLS HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ +D
Sbjct: 82  KLSVHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGLD 121

BLAST of PI0009517 vs. NCBI nr
Match: XP_023553191.1 (uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-40
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 0

Query: 40  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDKVKRVMSISDGKL 99
           M PT SVASDGE  WEFSCDFEVDYESEKKASIVYKAL+VDKELQPDKVKR M++SDGKL
Sbjct: 1   MPPTPSVASDGEPNWEFSCDFEVDYESEKKASIVYKALVVDKELQPDKVKREMTVSDGKL 60

Query: 100 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQEVDF 139
           S HFEAVEARFLRASFSAFVDVLTLATKTIEDFGQ VDF
Sbjct: 61  SIHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQGVDF 99

BLAST of PI0009517 vs. TAIR 10
Match: AT5G53045.1 (unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 46; Fungi - 30; Plants - 41; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 125.6 bits (314), Expect = 3.2e-29
Identity = 60/96 (62.50%), Postives = 76/96 (79.17%), Query Frame = 0

Query: 40  MTPTASVASDGEAKWEFSCDFEVDYESEKKASIVYKALIVDKELQPDKVKRVMSISDGKL 99
           M  T    +  +  W+FSC+ +V +ESE+ A I Y +L VDKELQPDKV+RVMS+S+ KL
Sbjct: 1   MAATVPATTRSDQTWDFSCNLDVSFESEEHALIAYTSLAVDKELQPDKVRRVMSVSNNKL 60

Query: 100 STHFEAVEARFLRASFSAFVDVLTLATKTIEDFGQE 136
           S HFEA+EAR LRASFSAFVDVLTLAT+TI++FGQ+
Sbjct: 61  SVHFEAIEARLLRASFSAFVDVLTLATRTIQEFGQK 96

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L7A28.2e-4992.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G238730 PE=3 SV=1[more]
A0A1S3CTG03.3e-4292.93uncharacterized protein LOC103504146 OS=Cucumis melo OX=3656 GN=LOC103504146 PE=... [more]
A0A5D3CJ233.3e-4292.93EKC/KEOPS complex, subunit Pcc1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A6J1CHJ52.2e-4190.00uncharacterized protein LOC111011564 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
A0A6J1G2C31.0e-3884.85uncharacterized protein LOC111450028 OS=Cucurbita moschata OX=3662 GN=LOC1114500... [more]
Match NameE-valueIdentityDescription
XP_038895564.19.6e-4494.95uncharacterized protein LOC120083771 [Benincasa hispida][more]
XP_008466840.16.9e-4292.93PREDICTED: uncharacterized protein LOC103504146 [Cucumis melo] >XP_008466841.1 P... [more]
XP_004146228.11.2e-4192.93uncharacterized protein LOC101217139 [Cucumis sativus] >KAE8650547.1 hypothetica... [more]
XP_022141079.14.4e-4190.00uncharacterized protein LOC111011564 [Momordica charantia][more]
XP_023553191.11.3e-4089.90uncharacterized protein LOC111810678 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
AT5G53045.13.2e-2962.50unknown protein; Has 122 Blast hits to 122 proteins in 57 species: Archae - 0; B... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015419CTAG/Pcc1 familyPFAMPF09341Pcc1coord: 57..130
e-value: 4.3E-18
score: 65.2
IPR015419CTAG/Pcc1 familyPANTHERPTHR31283EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBERcoord: 49..135
NoneNo IPR availableGENE3D3.30.310.50coord: 46..137
e-value: 7.4E-22
score: 79.1
NoneNo IPR availablePANTHERPTHR31283:SF5GEO08993P1coord: 49..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0009517.1PI0009517.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070525 tRNA threonylcarbamoyladenosine metabolic process
cellular_component GO:0000408 EKC/KEOPS complex