PI0009407 (gene) Melon (PI 482460) v1

Overview


Name	PI0009407
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein
Location	chr02: 21668248 .. 21668952 (-)
RNA-Seq Expression	PI0009407
Synteny	PI0009407

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGACCGCGAACGAGATAGAGATAGAGGCCGCGACAGAGATAAAGATCGGGACCGTGATAGATACAAAGACCGGGAGCGAGACCGTGACCATCGGGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGACCACCGTGAACGTGATCGGGACCGGGAACGGCGTAGAGATCAAGACGACCGTGACCGTGAAAGGGAGCGTGGCCGGAGTAAAAGGTCACACACTCCCGACCGGTCAAGATCCCGCCACACGCGCTCTCGCACCCGGTCACCGGAACGGCACCGGTCGCGGTCTCTTTCTCGTACTCCTGAGGACCGGCCATCTCGCCGCCGCCATCGTTCTCCCTCCCCGGATCACGCTCGGAAGCGTCATCGCCGGGATTTGACTGCGGACGACGAAAAGGAGCGGCAGAAAGCAGTTTCTGACTTTGTTGATGGCATTGCGAAAGAGCAGCACAAGCAGAAGAATAATAAAGATAACGTTGGTAGCGGAGAAGTAGTGGAGGAGGCCATGGCTGATGAAGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGCAAACCTGTTCCAGGTGCTGATGTGAGTGGCGTTAGGGTAGTTACCAAGAGGCAGCCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGCTGCCGGCCGAGCGCACTCGGTAG

mRNA sequence

ATGGTCGACCGCGAACGAGATAGAGATAGAGGCCGCGACAGAGATAAAGATCGGGACCGTGATAGATACAAAGACCGGGAGCGAGACCGTGACCATCGGGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGACCACCGTGAACGTGATCGGGACCGGGAACGGCGTAGAGATCAAGACGACCGTGACCGTGAAAGGGAGCGTGGCCGGAGTAAAAGGTCACACACTCCCGACCGGTCAAGATCCCGCCACACGCGCTCTCGCACCCGGTCACCGGAACGGCACCGGTCGCGGTCTCTTTCTCGTACTCCTGAGGACCGGCCATCTCGCCGCCGCCATCGTTCTCCCTCCCCGGATCACGCTCGGAAGCGTCATCGCCGGGATTTGACTGCGGACGACGAAAAGGAGCGGCAGAAAGCAGTTTCTGACTTTGTTGATGGCATTGCGAAAGAGCAGCACAAGCAGAAGAATAATAAAGATAACGTTGGTAGCGGAGAAGTAGTGGAGGAGGCCATGGCTGATGAAGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGCAAACCTGTTCCAGGTGCTGATGTGAGTGGCGTTAGGGTAGTTACCAAGAGGCAGCCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGCTGCCGGCCGAGCGCACTCGGTAG

Coding sequence (CDS)

ATGGTCGACCGCGAACGAGATAGAGATAGAGGCCGCGACAGAGATAAAGATCGGGACCGTGATAGATACAAAGACCGGGAGCGAGACCGTGACCATCGGGAACGTGACCGGCGTAGGGATCGAGAAGATCGTGACCACCGTGAACGTGATCGGGACCGGGAACGGCGTAGAGATCAAGACGACCGTGACCGTGAAAGGGAGCGTGGCCGGAGTAAAAGGTCACACACTCCCGACCGGTCAAGATCCCGCCACACGCGCTCTCGCACCCGGTCACCGGAACGGCACCGGTCGCGGTCTCTTTCTCGTACTCCTGAGGACCGGCCATCTCGCCGCCGCCATCGTTCTCCCTCCCCGGATCACGCTCGGAAGCGTCATCGCCGGGATTTGACTGCGGACGACGAAAAGGAGCGGCAGAAAGCAGTTTCTGACTTTGTTGATGGCATTGCGAAAGAGCAGCACAAGCAGAAGAATAATAAAGATAACGTTGGTAGCGGAGAAGTAGTGGAGGAGGCCATGGCTGATGAAGATGAAATTGAGATGATGAAGAAATTAGGTATTCCCGTGGGTTTCGATTCGACCAAGGGCAAACCTGTTCCAGGTGCTGATGTGAGTGGCGTTAGGGTAGTTACCAAGAGGCAGCCTAGGCAGTACATGAATCGTCGTGGCGGGTTCAACCGGCCGCTGCCGGCCGAGCGCACTCGGTAG

Protein sequence

MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQDDRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHRSRSLSRTPEDRPSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGSGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR

Homology

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BLAST of PI0009407 vs. ExPASy Swiss-Prot
Match: Q8K194 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090 GN=Snrnp27 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-08
Identity = 81/197 (41.12%), Postives = 99/197 (50.25%), Query Frame = 0


Query: 33  RERDRRRDREDRDHRERDRDRERRRDQDDRDRERERGRSKRSHTPDRSRSRHTRSRTRSP 92
           R R R   RE R  R   RDRERRR +  R RER+R                 RSR+RSP
Sbjct: 3   RSRSRSPRRERRRSRSTSRDRERRRRERSRSRERDR----------------RRSRSRSP 62

Query: 93  ERHRSRSLSRTPEDRPSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQ 152
            R RSR          S RRHRS SP  +R + RR    D+EK+  K +        K +
Sbjct: 63  HRRRSR----------SPRRHRSTSPSPSRLKERR----DEEKKETKEI--------KNK 122

Query: 153 HKQKNNKDNVGSGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTK 212
            +Q   +D  G           E+EIEMMK +G    FDSTKGK V G+ +   + V  K
Sbjct: 123 ERQITEEDLEGK---------TEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQK 151

Query: 213 RQPRQYMNRRGGFNRPL 229
           R+ RQYMNR+GGFNRPL
Sbjct: 183 RKYRQYMNRKGGFNRPL 151

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BLAST of PI0009407 vs. ExPASy Swiss-Prot
Match: Q8WVK2 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 GN=SNRNP27 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-07
Identity = 80/197 (40.61%), Postives = 98/197 (49.75%), Query Frame = 0


Query: 33  RERDRRRDREDRDHRERDRDRERRRDQDDRDRERERGRSKRSHTPDRSRSRHTRSRTRSP 92
           R R R   RE R  R   R+RERRR +  R RER+R                 RSR+RSP
Sbjct: 3   RSRSRSPRRERRRSRSTSRERERRRRERSRSRERDR----------------RRSRSRSP 62

Query: 93  ERHRSRSLSRTPEDRPSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQ 152
            R RSR          S RRHRS SP  +R + RR    D+EK+  K          K +
Sbjct: 63  HRRRSR----------SPRRHRSTSPSPSRLKERR----DEEKKETKE--------TKSK 122

Query: 153 HKQKNNKDNVGSGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTK 212
            +Q   +D  G           E+EIEMMK +G    FDSTKGK V G+ +   + V  K
Sbjct: 123 ERQITEEDLEGK---------TEEEIEMMKLMGF-ASFDSTKGKKVDGSVNAYAINVSQK 151

Query: 213 RQPRQYMNRRGGFNRPL 229
           R+ RQYMNR+GGFNRPL
Sbjct: 183 RKYRQYMNRKGGFNRPL 151

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BLAST of PI0009407 vs. ExPASy Swiss-Prot
Match: Q6GLZ8 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=8355 GN=snrnp27 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 1.1e-05
Identity = 76/193 (39.38%), Postives = 98/193 (50.78%), Query Frame = 0


Query: 37  RRRDREDRDHRERDRDRERRRDQDDRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHR 96
           R R R     RER R R   R+++ R RER R R +R            RSR+RSP R R
Sbjct: 3   RSRSRSPERRRERRRSRSASRERERRRRERSRSRERR------------RSRSRSPHRRR 62

Query: 97  SRSLSRTPEDRPSRRRHRSPSPDHARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQK 156
           SR          S RRHRS S   +R + RRD   DD+KE              ++ K  
Sbjct: 63  SR----------SPRRHRSSSISPSRLKDRRD---DDKKE-------------PKESKGG 122

Query: 157 NNKDNVGSGEVVEEAMADEDEIEMMKKLGIPVGFDSTKGKPVPGA-DVSGVRVVTKRQPR 216
            +K+   + E +E     E+EIEMMK +G    FDS+KGK   G+ +   + V  KR+ R
Sbjct: 123 GSKERQLAAEDLEG--KTEEEIEMMKLMGF-ASFDSSKGKKTDGSVNAYAINVSQKRKYR 154

Query: 217 QYMNRRGGFNRPL 229
           QYMNR+GGFNRPL
Sbjct: 183 QYMNRKGGFNRPL 154

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BLAST of PI0009407 vs. ExPASy Swiss-Prot
Match: Q9ZR40 (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 1.0e-03
Identity = 61/109 (55.96%), Postives = 73/109 (66.97%), Query Frame = 0


Query: 3   DRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQDDR 62
           DR+RDRDRGRDRD+ RDRD+ ++RE+DRD    DR RDR DR  +ER RD    RD DDR
Sbjct: 72  DRDRDRDRGRDRDRGRDRDKDREREKDRDRHHGDRHRDRSDRREKERTRD----RDDDDR 131

Query: 63  DRERERGRSKRSHTPDR-SRSRH-TRSRTRSPERHRSRSLSRTPEDRPS 110
            R R+  + +R H  DR SR RH +RSR RS  R RSRS SR+   R S
Sbjct: 132 HRTRDYDQ-QREHAKDRESRHRHRSRSRGRSEHRSRSRSRSRSKSKRIS 175

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BLAST of PI0009407 vs. ExPASy TrEMBL
Match: A0A5D3CK71 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00330 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.7e-103
Identity = 228/234 (97.44%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRD D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHRSRSLSRTPEDRPSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDRSRSR  RSRTRSP+RHRSRSLSRTPEDR SRRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGSGEVVEEAMADEDEIEM 180
           ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDN GSGEVVEEAMADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

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BLAST of PI0009407 vs. ExPASy TrEMBL
Match: A0A1S3BW27 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 GN=LOC103494258 PE=3 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 5.7e-103
Identity = 228/234 (97.44%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRD D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHRSRSLSRTPEDRPSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDRSRSR  RSRTRSP+RHRSRSLSRTPEDR SRRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGSGEVVEEAMADEDEIEM 180
           ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDN GSGEVVEEAMADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

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BLAST of PI0009407 vs. ExPASy TrEMBL
Match: A0A0A0LU61 (SNRNP27 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423230 PE=3 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.3e-102
Identity = 227/234 (97.01%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60

Query: 61  DRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHRSRSLSRTPEDRPSRRRHRSPSPDH 120
           DRDRERERGRSKRS TPDRSRSR  RSRTRSP+RHRSRSLSRTPEDRPSRRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSLTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGSGEVVEEAMADEDEIEM 180
           ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVG GEVVEEAMADEDE+EM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232

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BLAST of PI0009407 vs. ExPASy TrEMBL
Match: A0A6J1L1Y6 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita maxima OX=3661 GN=LOC111499666 PE=3 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 2.3e-91
Identity = 204/234 (87.18%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD          R+RDR+RERRRD+D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD----------RDRDRERERRRDRD 60

Query: 61  DRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHRSRSLSRTPEDRPSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDR RSRHTRSRTRSP++HR+RSLSR+PEDR  RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSHTPDRLRSRHTRSRTRSPDQHRTRSLSRSPEDRSLRRRHRSPSPEH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGSGEVVEEAMADEDEIEM 180
           ARKRHRRDLT DD+KERQK VSDFVDGIAKEQHKQK NKD VG  EVVEEA+ADEDEIEM
Sbjct: 121 ARKRHRRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDRVGGEEVVEEAVADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

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BLAST of PI0009407 vs. ExPASy TrEMBL
Match: A0A6J1C0K3 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Momordica charantia OX=3673 GN=LOC111007178 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 3.3e-90
Identity = 205/238 (86.13%), Postives = 211/238 (88.66%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRE                RDRERRRD+D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRE----------------RDRERRRDRD 60

Query: 61  DRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHRSRSLSRTPEDRPSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDR+RSRHTRSRTRSP+RHRSRSLSRTPEDR  RRRHR+PSP+H
Sbjct: 61  DRDRERERGRSKRSHTPDRTRSRHTRSRTRSPDRHRSRSLSRTPEDRSGRRRHRTPSPEH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNV----GSGEVVEEAMADED 180
           ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQK NKD      G GEVVEEAMADED
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKKNKDGSGGGGGGGEVVEEAMADED 180

Query: 181 EIEMMKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           EIEMMKKLGIPVGFDSTKGKPV GADVSGVRVVTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 EIEMMKKLGIPVGFDSTKGKPVAGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 222

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BLAST of PI0009407 vs. NCBI nr
Match: XP_008453595.1 (PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo] >KAA0058267.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo var. makuwa] >TYK11820.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 383.6 bits (984), Expect = 1.2e-102
Identity = 228/234 (97.44%), Postives = 229/234 (97.86%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRD D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDLD 60

Query: 61  DRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHRSRSLSRTPEDRPSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDRSRSR  RSRTRSP+RHRSRSLSRTPEDR SRRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSHTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRSSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGSGEVVEEAMADEDEIEM 180
           ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDN GSGEVVEEAMADEDEIEM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNAGSGEVVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 232

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BLAST of PI0009407 vs. NCBI nr
Match: XP_004146322.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus] >KGN65465.1 hypothetical protein Csa_019811 [Cucumis sativus])

HSP 1 Score: 382.5 bits (981), Expect = 2.6e-102
Identity = 227/234 (97.01%), Postives = 230/234 (98.29%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60

Query: 61  DRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHRSRSLSRTPEDRPSRRRHRSPSPDH 120
           DRDRERERGRSKRS TPDRSRSR  RSRTRSP+RHRSRSLSRTPEDRPSRRRHRSPSPDH
Sbjct: 61  DRDRERERGRSKRSLTPDRSRSR--RSRTRSPDRHRSRSLSRTPEDRPSRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGSGEVVEEAMADEDEIEM 180
           ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVG GEVVEEAMADEDE+EM
Sbjct: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGGGEVVEEAMADEDEMEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAER+R
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERSR 232

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BLAST of PI0009407 vs. NCBI nr
Match: KAG6589703.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023383.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 353.6 bits (906), Expect = 1.3e-93
Identity = 211/234 (90.17%), Postives = 218/234 (93.16%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60
           MVDRERDRDRGRDRDKDRDRDRY DRERDRD+RERDRRRDRED     RDRDRERRR++D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYIDRERDRDYRERDRRRDRED-----RDRDRERRREKD 60

Query: 61  DRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHRSRSLSRTPEDRPSRRRHRSPSPDH 120
           DRD ERERGR KRSHTP+R RSRHTRSRTRSP+RHRSRSLSRTPEDR  RRRHRSPSPDH
Sbjct: 61  DRDHERERGRGKRSHTPERPRSRHTRSRTRSPDRHRSRSLSRTPEDRSLRRRHRSPSPDH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGSGEVVEEAMADEDEIEM 180
            RKRHRRDLTADDEK+RQKAVSDFVDGIAKEQHKQKNNKD+VG GE VEEAMADEDEIEM
Sbjct: 121 VRKRHRRDLTADDEKDRQKAVSDFVDGIAKEQHKQKNNKDSVGGGESVEEAMADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPV GADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVAGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 229

[Close]

BLAST of PI0009407 vs. NCBI nr
Match: XP_023530476.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530477.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530478.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo] >XP_023530479.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 345.1 bits (884), Expect = 4.7e-91
Identity = 204/234 (87.18%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD          R+RDR+RERRRD++
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD----------RDRDRERERRRDRE 60

Query: 61  DRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHRSRSLSRTPEDRPSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDR RSRHTRSRTRSP+RHR+RSLSR+PEDR  RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSHTPDRLRSRHTRSRTRSPDRHRTRSLSRSPEDRSLRRRHRSPSPEH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGSGEVVEEAMADEDEIEM 180
           ARKRHRRDLT DD+KERQK VSDFVDGIAKEQHKQK NKD VG  EVVEEA+ADEDEIEM
Sbjct: 121 ARKRHRRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDGVGGEEVVEEAVADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of PI0009407 vs. NCBI nr
Match: XP_023007065.1 (U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima] >XP_023007073.1 U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima])

HSP 1 Score: 345.1 bits (884), Expect = 4.7e-91
Identity = 204/234 (87.18%), Postives = 214/234 (91.45%), Query Frame = 0


Query: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERDRRRDREDRDHRERDRDRERRRDQD 60
           MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD          R+RDR+RERRRD+D
Sbjct: 1   MVDRERDRDRGRDRDKDRDRDRYKDRERDRDHRERD----------RDRDRERERRRDRD 60

Query: 61  DRDRERERGRSKRSHTPDRSRSRHTRSRTRSPERHRSRSLSRTPEDRPSRRRHRSPSPDH 120
           DRDRERERGRSKRSHTPDR RSRHTRSRTRSP++HR+RSLSR+PEDR  RRRHRSPSP+H
Sbjct: 61  DRDRERERGRSKRSHTPDRLRSRHTRSRTRSPDQHRTRSLSRSPEDRSLRRRHRSPSPEH 120

Query: 121 ARKRHRRDLTADDEKERQKAVSDFVDGIAKEQHKQKNNKDNVGSGEVVEEAMADEDEIEM 180
           ARKRHRRDLT DD+KERQK VSDFVDGIAKEQHKQK NKD VG  EVVEEA+ADEDEIEM
Sbjct: 121 ARKRHRRDLTVDDDKERQKVVSDFVDGIAKEQHKQKKNKDRVGGEEVVEEAVADEDEIEM 180

Query: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           MKKLGIPVGFDSTKGKPVPGADVSGVR VTKRQPRQYMNRRGGFNRPLPAERTR
Sbjct: 181 MKKLGIPVGFDSTKGKPVPGADVSGVRAVTKRQPRQYMNRRGGFNRPLPAERTR 224

[Close]

BLAST of PI0009407 vs. TAIR 10
Match: AT5G57370.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777 (InterPro:IPR013957); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-36
Identity = 130/230 (56.52%), Postives = 158/230 (68.70%), Query Frame = 0


Query: 19  DRDRYKDRERDRDHR-ERDRRRDREDRDHRERDRDRERRRDQDDRDRERERG---RSKRS 78
           +RDR ++RERD+D   +RDRRR R+DRD R+RDRDRER     DR+R+R+RG   +  RS
Sbjct: 3   ERDR-RERERDKDREPDRDRRRGRDDRD-RDRDRDRER-----DRERDRDRGLRNKKSRS 62

Query: 79  HTPD-RSRSRHTRSRTRSPERHRSRSLS---RTPEDRPSRRRHRSPSPDHARKRHRRDLT 138
            TPD  +R+RH     RSPER+RSRS S       DR    R RSPSPD   ++  R  +
Sbjct: 63  RTPDHHARARH----VRSPERYRSRSRSIDRDRDRDRQRHHRRRSPSPDAPSRKRPRQGS 122

Query: 139 ADDEKE--RQKAVSDFVD----GIAKEQHKQKNNKDNVGSGEVVEEAMADEDEIEMMKKL 198
            DDEKE  R++ V+D VD     I K++ KQ ++  + G GE  +E   D +EIEMMK L
Sbjct: 123 VDDEKERNRKRVVTDSVDENASTITKKKDKQPSDAADNGGGE--DEEGMDVNEIEMMKML 182

Query: 199 GIPVGFDSTKGKPVPGADVSGVRVVTKRQPRQYMNRRGGFNRPLPAERTR 235
           GIP GFDSTKGKPV GADVSG+R VTKRQPRQYMNRRGGFNRPLPAER R
Sbjct: 183 GIPTGFDSTKGKPVAGADVSGIRAVTKRQPRQYMNRRGGFNRPLPAERNR 219

The following BLAST results are available for this feature:

BLAST of PI0009407 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8K194	1.8e-08	41.12	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Mus musculus OX=10090...	[more]
Q8WVK2	1.5e-07	40.61	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Homo sapiens OX=9606 ...	[more]
Q6GLZ8	1.1e-05	39.38	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Xenopus laevis OX=835...	[more]
Q9ZR40	1.0e-03	55.96	Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia OX=4092 GN=U2A...	[more]

BLAST of PI0009407 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CK71	5.7e-103	97.44	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo var. mak...	[more]
A0A1S3BW27	5.7e-103	97.44	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Cucumis melo OX=3656 ...	[more]
A0A0A0LU61	1.3e-102	97.01	SNRNP27 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423230 PE=...	[more]
A0A6J1L1Y6	2.3e-91	87.18	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like OS=Cucurbita maxima...	[more]
A0A6J1C0K3	3.3e-90	86.13	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein OS=Momordica charantia O...	[more]

BLAST of PI0009407 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008453595.1	1.2e-102	97.44	PREDICTED: U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis melo...	[more]
XP_004146322.1	2.6e-102	97.01	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein [Cucumis sativus] >KGN65...	[more]
KAG6589703.1	1.3e-93	90.17	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein, partial [Cucurbita argy...	[more]
XP_023530476.1	4.7e-91	87.18	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita pepo sub...	[more]
XP_023007065.1	4.7e-91	87.18	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein-like [Cucurbita maxima] ...	[more]

BLAST of PI0009407 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57370.1	2.7e-36	56.52	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1777...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013957	U4/U6.U5 small nuclear ribonucleoprotein 27kDa protein	PFAM	PF08648	SNRNP27	coord: 175..230 e-value: 1.0E-24 score: 86.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 122..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..93
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..234
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	PANTHER	PTHR31077	U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN	coord: 34..234
None	No IPR available	PANTHER	PTHR31077:SF4	BNAA10G11430D PROTEIN	coord: 34..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0009407.1	PI0009407.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0005634	nucleus