Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATACATCACTCGACCGGAATCAGCTGGGGTCATCTGGTACATATTTAAATATTGTATAATTACTTTAAATTATTTAATTTAAATTATTTACTTAATTAAATATTTTCTAATTTTTTTTACAATTCACAGAGATTGAACAACAAAAGACTTCGTGATGTTGCAGATAATCCACAACAAGTCCTTGAGATATGTAATAATAATGAGAGGTACATAGAGGAGATACATTATATGTACAATGTATTGTACCTCCACCAGTTCACAGAGGACGTGTTCAAGTGGAAGAAACTAAACTCGATGAAATTTATCATAATGTAGAAGAAGTGCCTTCAGTGACACAGACACAGAGCCAAACTGGTTATGGTAGTCCGATGATGATAATGCCAGCATTTGAAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATAACTTAAGAGTCGGTCCATCATCTTCATACATGGATGTCGGTCCATCAACCTCTTACGTGCATGGACACGGACGCGGCCGTAAAGAACATAACGAATTTCTGTACTATAAAGCACCTGCAGACATATCAGATCTACAAGAGAACCAACAAGAACCAGAGAATCAAGAGGAGTCAAGGTAA
mRNA sequence
ATGGCTATACATCACTCGACCGGAATCAGCTGGGGTCATCTGAGATTGAACAACAAAAGACTTCGTGATGTTGCAGATAATCCACAACAAGTCCTTGAGATATGTAATAATAATGAGAGAGGACGTGTTCAAGTGGAAGAAACTAAACTCGATGAAATTTATCATAATGTAGAAGAAGTGCCTTCAGTGACACAGACACAGAGCCAAACTGGTTATGGTAGTCCGATGATGATAATGCCAGCATTTGAAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATAACTTAAGAGTCGGTCCATCATCTTCATACATGGATGTCGGTCCATCAACCTCTTACGTGCATGGACACGGACGCGGCCGTAAAGAACATAACGAATTTCTGTACTATAAAGCACCTGCAGACATATCAGATCTACAAGAGAACCAACAAGAACCAGAGAATCAAGAGGAGTCAAGGTAA
Coding sequence (CDS)
ATGGCTATACATCACTCGACCGGAATCAGCTGGGGTCATCTGAGATTGAACAACAAAAGACTTCGTGATGTTGCAGATAATCCACAACAAGTCCTTGAGATATGTAATAATAATGAGAGAGGACGTGTTCAAGTGGAAGAAACTAAACTCGATGAAATTTATCATAATGTAGAAGAAGTGCCTTCAGTGACACAGACACAGAGCCAAACTGGTTATGGTAGTCCGATGATGATAATGCCAGCATTTGAAGCAGGATATTGTGATTCTGAGGTCGGTACAGGATATTATAACTTAAGAGTCGGTCCATCATCTTCATACATGGATGTCGGTCCATCAACCTCTTACGTGCATGGACACGGACGCGGCCGTAAAGAACATAACGAATTTCTGTACTATAAAGCACCTGCAGACATATCAGATCTACAAGAGAACCAACAAGAACCAGAGAATCAAGAGGAGTCAAGGTAA
Protein sequence
MAIHHSTGISWGHLRLNNKRLRDVADNPQQVLEICNNNERGRVQVEETKLDEIYHNVEEVPSVTQTQSQTGYGSPMMIMPAFEAGYCDSEVGTGYYNLRVGPSSSYMDVGPSTSYVHGHGRGRKEHNEFLYYKAPADISDLQENQQEPENQEESR
Homology
BLAST of PI0009384 vs. ExPASy TrEMBL
Match:
A0A5D3DJV7 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold419G00060 PE=4 SV=1)
HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 105/162 (64.81%), Postives = 121/162 (74.69%), Query Frame = 0
Query: 12 GHLRLNNKRLRDVADNPQQVLEICNNNE--------------------RGRVQVEETKLD 71
GHLR NN RLRDV ++PQQVL+ICNNNE R R +VEE +LD
Sbjct: 314 GHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELD 373
Query: 72 EIYHNVEEVPSVTQTQSQTGYGSPMMIMPAFEAGYCDSEVGTGYYNLRVGPSSSYMDVGP 131
E+YHNVEEVP TQTQSQTGYGSPM +MP F AGYCDSEV GYY+ VGP SSYMDVGP
Sbjct: 374 EVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGP 433
Query: 132 STSYVHGHGRGRKEHNEFLYYKAPADISDLQENQQEPENQEE 154
STSY++GHGRG EHNE+LY++AP D+SD QE QQEP+NQE+
Sbjct: 434 STSYMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQEPKNQED 475
BLAST of PI0009384 vs. ExPASy TrEMBL
Match:
A0A5A7V342 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001560 PE=4 SV=1)
HSP 1 Score: 205.7 bits (522), Expect = 1.4e-49
Identity = 105/159 (66.04%), Postives = 120/159 (75.47%), Query Frame = 0
Query: 15 RLNNKRLRDVADNPQQVLEICNNNE--------------------RGRVQVEETKLDEIY 74
R NN RLRDVAD+ QQ L+ICNNNE RG V+VEE +LD++Y
Sbjct: 39 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98
Query: 75 HNVEEVPSVTQTQSQTGYGSPMMIMPAFEAGYCDSEVGTGYYNLRVGPSSSYMDVGPSTS 134
HNVEEVPS TQTQSQTGYGSPM +MP FEAGYCD EVG GYY+ VGPSSSY+DV PSTS
Sbjct: 99 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158
Query: 135 YVHGHGRGRKEHNEFLYYKAPADISDLQENQQEPENQEE 154
Y+HGH RG EHNE+LY++APAD+SD QE QQEPENQE+
Sbjct: 159 YMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQEPENQED 197
BLAST of PI0009384 vs. ExPASy TrEMBL
Match:
A0A5D3BSG8 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2044G00130 PE=4 SV=1)
HSP 1 Score: 204.9 bits (520), Expect = 2.4e-49
Identity = 105/159 (66.04%), Postives = 120/159 (75.47%), Query Frame = 0
Query: 15 RLNNKRLRDVADNPQQVLEICNNNE--------------------RGRVQVEETKLDEIY 74
R NN RLRDVAD+ QQ L+ICNNNE RG V+VEE +LD++Y
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86
Query: 75 HNVEEVPSVTQTQSQTGYGSPMMIMPAFEAGYCDSEVGTGYYNLRVGPSSSYMDVGPSTS 134
HNVEEVPS TQTQSQTGYGSPM +MP FEAGYCD EVG GYY+ VGPSSSY+DV PSTS
Sbjct: 87 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146
Query: 135 YVHGHGRGRKEHNEFLYYKAPADISDLQENQQEPENQEE 154
Y+HGH RG EHNE+LY++APAD+SD QE QQEPENQE+
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQED 185
BLAST of PI0009384 vs. ExPASy TrEMBL
Match:
A0A5A7SLF8 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002870 PE=4 SV=1)
HSP 1 Score: 194.1 bits (492), Expect = 4.3e-46
Identity = 100/162 (61.73%), Postives = 116/162 (71.60%), Query Frame = 0
Query: 12 GHLRLNNKRLRDVADNPQQVLEICNNNE--------------------RGRVQVEETKLD 71
G R NN RLRDVAD+ QQVL+ICNNN+ RGRVQVEE +LD
Sbjct: 33 GATRSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHRGRVQVEEAELD 92
Query: 72 EIYHNVEEVPSVTQTQSQTGYGSPMMIMPAFEAGYCDSEVGTGYYNLRVGPSSSYMDVGP 131
E+YHNVEE+ TQ Q+QTGYGSPM++MP F GYCD EV T YY+ VGPSSSYMDVGP
Sbjct: 93 EVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGVGPSSSYMDVGP 152
Query: 132 STSYVHGHGRGRKEHNEFLYYKAPADISDLQENQQEPENQEE 154
STSY+HGH EHNE+LY++AP ++SD QE QQEPENQEE
Sbjct: 153 STSYMHGHRHDYGEHNEYLYHEAPTEVSDRQEYQQEPENQEE 194
BLAST of PI0009384 vs. ExPASy TrEMBL
Match:
A0A5D3BMS3 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00070 PE=4 SV=1)
HSP 1 Score: 191.0 bits (484), Expect = 3.6e-45
Identity = 94/142 (66.20%), Postives = 111/142 (78.17%), Query Frame = 0
Query: 12 GHLRLNNKRLRDVADNPQQVLEICNNNERGRVQVEETKLDEIYHNVEEVPSVTQTQSQTG 71
G R NN RLRDV D+PQQVL++ +LD++YHNVEEVP TQTQSQTG
Sbjct: 4 GATRSNNARLRDVVDDPQQVLDM-------------FELDKVYHNVEEVPPTTQTQSQTG 63
Query: 72 YGSPMMIMPAFEAGYCDSEVGTGYYNLRVGPSSSYMDVGPSTSYVHGHGRGRKEHNEFLY 131
YGSPM +MP F AGYCDS++GTGYY+ VGPSSSYMDV PSTSY+HGHGRG +HNE+LY
Sbjct: 64 YGSPMTMMPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLY 123
Query: 132 YKAPADISDLQENQQEPENQEE 154
++APAD+SD QE QQEPENQE+
Sbjct: 124 HEAPADVSDRQEYQQEPENQED 132
BLAST of PI0009384 vs. NCBI nr
Match:
TYK23842.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 208.0 bits (528), Expect = 5.9e-50
Identity = 105/162 (64.81%), Postives = 121/162 (74.69%), Query Frame = 0
Query: 12 GHLRLNNKRLRDVADNPQQVLEICNNNE--------------------RGRVQVEETKLD 71
GHLR NN RLRDV ++PQQVL+ICNNNE R R +VEE +LD
Sbjct: 314 GHLRSNNARLRDVVNDPQQVLDICNNNERYMEKIHNIYDLPIVPPPVHRERFRVEEAELD 373
Query: 72 EIYHNVEEVPSVTQTQSQTGYGSPMMIMPAFEAGYCDSEVGTGYYNLRVGPSSSYMDVGP 131
E+YHNVEEVP TQTQSQTGYGSPM +MP F AGYCDSEV GYY+ VGP SSYMDVGP
Sbjct: 374 EVYHNVEEVPPTTQTQSQTGYGSPMTMMPTFGAGYCDSEVSIGYYDAVVGPLSSYMDVGP 433
Query: 132 STSYVHGHGRGRKEHNEFLYYKAPADISDLQENQQEPENQEE 154
STSY++GHGRG EHNE+LY++AP D+SD QE QQEP+NQE+
Sbjct: 434 STSYMYGHGRGYGEHNEYLYHEAPTDVSDRQEYQQEPKNQED 475
BLAST of PI0009384 vs. NCBI nr
Match:
KAA0062642.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 205.7 bits (522), Expect = 2.9e-49
Identity = 105/159 (66.04%), Postives = 120/159 (75.47%), Query Frame = 0
Query: 15 RLNNKRLRDVADNPQQVLEICNNNE--------------------RGRVQVEETKLDEIY 74
R NN RLRDVAD+ QQ L+ICNNNE RG V+VEE +LD++Y
Sbjct: 39 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 98
Query: 75 HNVEEVPSVTQTQSQTGYGSPMMIMPAFEAGYCDSEVGTGYYNLRVGPSSSYMDVGPSTS 134
HNVEEVPS TQTQSQTGYGSPM +MP FEAGYCD EVG GYY+ VGPSSSY+DV PSTS
Sbjct: 99 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 158
Query: 135 YVHGHGRGRKEHNEFLYYKAPADISDLQENQQEPENQEE 154
Y+HGH RG EHNE+LY++APAD+SD QE QQEPENQE+
Sbjct: 159 YMHGHSRGYGEHNEYLYHEAPADVSDRQEYQQEPENQED 197
BLAST of PI0009384 vs. NCBI nr
Match:
TYK01176.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 204.9 bits (520), Expect = 5.0e-49
Identity = 105/159 (66.04%), Postives = 120/159 (75.47%), Query Frame = 0
Query: 15 RLNNKRLRDVADNPQQVLEICNNNE--------------------RGRVQVEETKLDEIY 74
R NN RLRDVAD+ QQ L+ICNNNE RG V+VEE +LD++Y
Sbjct: 27 RSNNARLRDVADDLQQFLDICNNNERYMEEIHNMYDLPIVPPPVHRGCVRVEEAELDKVY 86
Query: 75 HNVEEVPSVTQTQSQTGYGSPMMIMPAFEAGYCDSEVGTGYYNLRVGPSSSYMDVGPSTS 134
HNVEEVPS TQTQSQTGYGSPM +MP FEAGYCD EVG GYY+ VGPSSSY+DV PSTS
Sbjct: 87 HNVEEVPSTTQTQSQTGYGSPMTMMPTFEAGYCDFEVGIGYYDAGVGPSSSYVDVSPSTS 146
Query: 135 YVHGHGRGRKEHNEFLYYKAPADISDLQENQQEPENQEE 154
Y+HGH RG EHNE+LY++APAD+SD QE QQEPENQE+
Sbjct: 147 YMHGHRRGYGEHNEYLYHEAPADVSDRQEYQQEPENQED 185
BLAST of PI0009384 vs. NCBI nr
Match:
KAA0025972.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 194.1 bits (492), Expect = 8.8e-46
Identity = 100/162 (61.73%), Postives = 116/162 (71.60%), Query Frame = 0
Query: 12 GHLRLNNKRLRDVADNPQQVLEICNNNE--------------------RGRVQVEETKLD 71
G R NN RLRDVAD+ QQVL+ICNNN+ RGRVQVEE +LD
Sbjct: 33 GATRSNNARLRDVADDSQQVLDICNNNKRHMEEIHNMYHLPIVPPQIHRGRVQVEEAELD 92
Query: 72 EIYHNVEEVPSVTQTQSQTGYGSPMMIMPAFEAGYCDSEVGTGYYNLRVGPSSSYMDVGP 131
E+YHNVEE+ TQ Q+QTGYGSPM++MP F GYCD EV T YY+ VGPSSSYMDVGP
Sbjct: 93 EVYHNVEEMTPTTQKQNQTGYGSPMIMMPTFGVGYCDFEVNTEYYDSGVGPSSSYMDVGP 152
Query: 132 STSYVHGHGRGRKEHNEFLYYKAPADISDLQENQQEPENQEE 154
STSY+HGH EHNE+LY++AP ++SD QE QQEPENQEE
Sbjct: 153 STSYMHGHRHDYGEHNEYLYHEAPTEVSDRQEYQQEPENQEE 194
BLAST of PI0009384 vs. NCBI nr
Match:
TYK01111.1 (GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var. makuwa])
HSP 1 Score: 191.0 bits (484), Expect = 7.4e-45
Identity = 94/142 (66.20%), Postives = 111/142 (78.17%), Query Frame = 0
Query: 12 GHLRLNNKRLRDVADNPQQVLEICNNNERGRVQVEETKLDEIYHNVEEVPSVTQTQSQTG 71
G R NN RLRDV D+PQQVL++ +LD++YHNVEEVP TQTQSQTG
Sbjct: 4 GATRSNNARLRDVVDDPQQVLDM-------------FELDKVYHNVEEVPPTTQTQSQTG 63
Query: 72 YGSPMMIMPAFEAGYCDSEVGTGYYNLRVGPSSSYMDVGPSTSYVHGHGRGRKEHNEFLY 131
YGSPM +MP F AGYCDS++GTGYY+ VGPSSSYMDV PSTSY+HGHGRG +HNE+LY
Sbjct: 64 YGSPMTMMPTFGAGYCDSKIGTGYYDAGVGPSSSYMDVDPSTSYMHGHGRGYGKHNEYLY 123
Query: 132 YKAPADISDLQENQQEPENQEE 154
++APAD+SD QE QQEPENQE+
Sbjct: 124 HEAPADVSDRQEYQQEPENQED 132
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3DJV7 | 2.8e-50 | 64.81 | Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... | [more] |
| A0A5A7V342 | 1.4e-49 | 66.04 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BSG8 | 2.4e-49 | 66.04 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| A0A5A7SLF8 | 4.3e-46 | 61.73 | Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... | [more] |
| A0A5D3BMS3 | 3.6e-45 | 66.20 | GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK23842.1 | 5.9e-50 | 64.81 | serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... | [more] |
| KAA0062642.1 | 2.9e-49 | 66.04 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK01176.1 | 5.0e-49 | 66.04 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| KAA0025972.1 | 8.8e-46 | 61.73 | mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... | [more] |
| TYK01111.1 | 7.4e-45 | 66.20 | GATA zinc finger domain-containing protein 10-like isoform X2 [Cucumis melo var.... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
