PI0009098 (gene) Melon (PI 482460) v1

Overview
NamePI0009098
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr11: 27410137 .. 27412067 (-)
RNA-Seq ExpressionPI0009098
SyntenyPI0009098
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGATCAAGTCATACATACCATAGTAACGGTACGTGTATTTGTAATGATGTTTAGTTTGGCATGTCTGTAAATGAGACGAAAGAACTAGTAACAAACGGATGGAAGTTTAGTATAGCATGAAGAATTGGTTGGTGACGCTGGAGATTGTATTAGTTCTTCAATCTGTAAACAGCCAGGATGAAATATTTTTTTGGTATCAAGCATATCCCTGATGACCTGTTTGTTTTGTTTTGTAGCGATTGTTTCGGAATGGTGTTATTGCGATCACAAGGATTGGCTCGAATTCTTTGCCTACTTACTGCTTCATGTAAGTTTATAATGGTCCACAGCTATGAGTTCCCTTGCTATATTTGGTTATTTTTATGTGAATTAAAAGTGACATAATTTACTGGTCTCCAGCTAGAAGATATGGTTGAGCTTTGGCTGGCCCATTTTATATGACTCATACTTCAATTTTCAAAATATTGATAATCATATTCCAACTGATATAATGATATTCTTTTCAACTTAAATATGATATAGAATCTTTGTTGTCCTAGATGCAAAGAATTGAGATGGCCCAACTGGGTTTTTTTGTCTGCTCTTACTTTTCTTTTGTCATAAAAGATACTTGATCAGGGGACCTCATTTTTGTTTCTAATCGATATGATATAGCATCGACAAAGTTATTGTCTTGGGATCTTTACCAGCAGCAATCCTTTTTTTCCATTTCTCTTTGTGATACTGTCTAAATACTTCGAATGTAATAAGAGCAATCAATTTATCTTGCTTAAGTACTGATTGGTGAAGATCCTCACCATCTACTTACAATGTCTTGCATGTCAACATAATGAGAGTGATTATTTGGGCATTTAGGAATAGAGTTTGCTAACTGCTGCCTTTTAGGATCCATGTAGCGACTCATTGCAAACATGTTCTAAGAATGCATCTTGCAACACAATTAGATAGATTAAACTGTCCAGGTTTTGGGAATAAAATAACACACTCTAAGAAATCATCTATGACACCCCTGCTTTATGCCCCAACTTAGGTAGAGAAGCTAAATGATATGGTGTTGTCTATTTTCTACTTGCACTGTCCAAACAAGTAATTTCGTTACATTTGGTTGGTAAAAAGATATGAAGGCTGGCAAATGAAACTTCAGCTGTTGGGATTGATGATGGTGTTTTACAGTTGTTAAGCCAAATGGATAGATTAAGGTTGCAGTTTGAAAAAGTGGGAAGACAGATGAATTGGCATTCTTGGAACGGTCAATACACGTAAGAGGTCGGTTAAAATCAATAGTTCCCTCCAAAAGTAATCTTGTTTTCAATAATTGAGTGGTTTTGCTCAGATGCATGGTTTCTATGTCGATAGTTTCACAAATATCTCTTGTGATCTTAAACCTCCATTATATGTTACACCTTTTGTCTCTAGACCATTTTGACTTTGCTGAAAACAGCTAGCAAATGAAAATTAATGCAGTAGCCCCAACATCATCAAGTTGCACGAGTCTTAGTCAATGCAATACTGGTTCCAACCTGGTGACCATAGATGATAAAACTTGAAACTGATCACTGCTTGATTATTACTTCCCTCACGCAGAATGGAATCAATTTGAGAATGATATGTGCACTTAGATACACCCTCTGTTGACGTTAAGAATCCTTATCAAGTATCGTCCTACTCGTACCCTTTTTCACATGAAAGTAATACCGGTATCGATTCCTCCTCTCTTGTGGGACTGTTCTGCTACACAATGGTCCTTATGAGCCATAGAAAGATTCAATCGTGTTTGATTGTTCCATGAGTAAATGTGAATATGCATTTTTTGTGTAGTTCCTAAAGGCTGATGGAAAGGATGCCAATTCAATCGTTAAGAAGAAATTATGGCTTTCATATTCACTGAAGCCTTGCAGGTTGGAAGAAACCGACAAGAATCTTGA

mRNA sequence

ATGTCAAGATCAAGTCATACATACCATAGTAACGCGATTGTTTCGGAATGGTGTTATTGCGATCACAAGGATTGGCTCGAATTCTTTGCCTACTTACTGCTTCATGTAAAAATTATGGCTTTCATATTCACTGAAGCCTTGCAGGTTGGAAGAAACCGACAAGAATCTTGA

Coding sequence (CDS)

ATGTCAAGATCAAGTCATACATACCATAGTAACGCGATTGTTTCGGAATGGTGTTATTGCGATCACAAGGATTGGCTCGAATTCTTTGCCTACTTACTGCTTCATGTAAAAATTATGGCTTTCATATTCACTGAAGCCTTGCAGGTTGGAAGAAACCGACAAGAATCTTGA

Protein sequence

MSRSSHTYHSNAIVSEWCYCDHKDWLEFFAYLLLHVKIMAFIFTEALQVGRNRQES
Homology
[Close]
BLAST of PI0009098 vs. ExPASy TrEMBL
Match: A0A0A0LIZ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G247050 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-09
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 0 

Query: 1  MSRSSHTYHSNAIVSEWCYCDHKDWLEFFAYLLLHVKIMAFIFTEALQVGRNRQES 57
          MSRSSHTY SN  VSE CYC+HKDWLEFFAYLLLH+     +F+ + ++ R   ES
Sbjct: 1  MSRSSHTYCSNVTVSECCYCNHKDWLEFFAYLLLHL-----LFSSSQRMNRRSNES 51

[Close]
BLAST of PI0009098 vs. NCBI nr
Match: KGN61838.2 (hypothetical protein Csa_006127 [Cucumis sativus])

HSP 1 Score: 53.1 bits (126), Expect = 8.8e-04
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 0 

Query: 14 VSEWCYCDHKDWLEFFAYLLLHVKIMAFIFTEALQVGRNRQES 57
          VSE CYC+HKDWLEFFAYLLLH+     +F+ + ++ R   ES
Sbjct: 3  VSECCYCNHKDWLEFFAYLLLHL-----LFSSSQRMNRRSNES 40

The following BLAST results are available for this feature:
BLAST of PI0009098 vs.
Match NameE-valueIdentityDescription
BLAST of PI0009098 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LIZ21.5e-0960.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G247050 PE=4 SV=1[more]
BLAST of PI0009098 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61838.28.8e-0455.81hypothetical protein Csa_006127 [Cucumis sativus][more]
BLAST of PI0009098 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0009098.1PI0009098.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum
cellular_component GO:0030126 COPI vesicle coat